View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_86 (Length: 353)

Name: NF10140A_low_86
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_86
NF10140A_low_86
[»] chr7 (4 HSPs)
chr7 (55-347)||(3929921-3930213)
chr7 (64-326)||(21317471-21317733)
chr7 (59-348)||(3928573-3928862)
chr7 (6-54)||(3929784-3929832)
[»] chr2 (5 HSPs)
chr2 (65-326)||(13576245-13576506)
chr2 (94-317)||(34571445-34571668)
chr2 (94-203)||(34562651-34562760)
chr2 (94-317)||(34578913-34579136)
chr2 (94-317)||(34584662-34584885)
[»] chr8 (8 HSPs)
chr8 (66-323)||(43479645-43479902)
chr8 (66-323)||(38799395-38799652)
chr8 (66-323)||(38821865-38822122)
chr8 (94-323)||(25865600-25865829)
chr8 (94-347)||(26592044-26592297)
chr8 (93-281)||(41943886-41944074)
chr8 (66-173)||(38807046-38807153)
chr8 (100-201)||(44343977-44344078)
[»] scaffold0197 (1 HSPs)
scaffold0197 (64-326)||(30909-31170)
[»] chr5 (8 HSPs)
chr5 (65-323)||(12531392-12531650)
chr5 (65-323)||(12546969-12547227)
chr5 (65-247)||(9866627-9866809)
chr5 (65-257)||(9894610-9894800)
chr5 (102-200)||(9870004-9870102)
chr5 (115-212)||(38735528-38735625)
chr5 (65-144)||(9903568-9903647)
chr5 (97-146)||(12538675-12538724)
[»] chr4 (6 HSPs)
chr4 (67-329)||(24860440-24860702)
chr4 (103-348)||(34748630-34748875)
chr4 (127-210)||(53290749-53290832)
chr4 (223-263)||(44771097-44771137)
chr4 (238-317)||(40035830-40035909)
chr4 (106-197)||(40036062-40036153)
[»] chr1 (3 HSPs)
chr1 (94-204)||(7594130-7594240)
chr1 (166-275)||(17769233-17769342)
chr1 (166-275)||(1539185-1539294)
[»] chr3 (1 HSPs)
chr3 (166-274)||(27440846-27440954)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 55 - 347
Target Start/End: Original strand, 3929921 - 3930213
Alignment:
Q  55 aatcaaatcttctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcg 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||    
T  3929921 aatcaaatcttctaagccctttcgcctctgattcttcttgcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaagattcg 3930020  T
Q  155 tatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgat 254  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  3930021 tatcttcaaacaaaccaacaagatacgcttcagcagcttcttgaagagcagaaacagcactactctgaaatcgaagatcagttttgaaatcctgagcgat 3930120  T
Q  255 ttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctgg 347  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || || | |||||||||||||||    
T  3930121 ttcacgaaccaatctttggaatggaagtttcctaatgagaagttcagtgctcttctgatacttgcggatctcacgaagtgcgactgttcctgg 3930213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 64 - 326
Target Start/End: Complemental strand, 21317733 - 21317471
Alignment:
Q  64 ttctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaa 163  Q
    |||||||||||||| || |  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||    
T  21317733 ttctaagccctttcaccacgaattcttcttgcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaa 21317634  T
Q  164 acaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaac 263  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  21317633 acaaaccaacaagataagcttcagccgcttcttgaagagcagaaacagcactgctctggaatctgagatcggttttgaaatcctgagcgatttcacgaac 21317534  T
Q  264 caatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttc 326  Q
     |  | ||||||||||||||| || || |||||||||||||||||||| ||||| ||||||||    
T  21317533 aagacgttggaatggaagttttcttatcagaagctcagtgctcttctggtacttgcggatttc 21317471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 59 - 348
Target Start/End: Original strand, 3928573 - 3928862
Alignment:
Q  59 aaatcttctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatc 158  Q
    ||||||||||||| || ||||  |||||||| | |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  3928573 aaatcttctaagctctctcgcacctgattctgcatgcaagtttaatatccttaggcacaatagtaactctcttagcatgaatagcacaaagattcatatc 3928672  T
Q  159 ctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttca 258  Q
     |||||||||||||||| | ||||||||||   ||||||||| ||||||||||| ||  |||| |||| |||||||||||||||||||||||||||||||    
T  3928673 ttcaaacaaaccaacaatacacgcttcagcgatttcttgaagagcagaaacagcgctgatctggaatcggagatcagttttgaaatcctgagcgatttca 3928772  T
Q  259 cgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctggt 348  Q
     |||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||| | |||||| |||||||||||||||||||||    
T  3928773 tgaaccaatcttttgaaaggaagtttcctaatgagaagctcagtgatcttttgatacttcctgatttcacgcaatgcgactgttcctggt 3928862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 3929784 - 3929832
Alignment:
Q  6 agtatcatagatttaacagatcaattcaacattcaagattcactttttc 54  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  3929784 agtatcatagattcaacagatcaattcaaaattcaagattcactttttc 3929832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 65 - 326
Target Start/End: Complemental strand, 13576506 - 13576245
Alignment:
Q  65 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaa 164  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  13576506 tctaagccctttcgcctctgattcttctcgcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaa 13576407  T
Q  165 caaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacc 264  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| || ||||| | |||||| ||||||||||||||||| ||||| ||||||    
T  13576406 caaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgaaaacggagatccgttttgaaatcctgagcaatttctcgaacc 13576307  T
Q  265 aatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttc 326  Q
    ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||    
T  13576306 aatctttggaatggaagcttccttatgagaagctcggtgctcttctgatacttgcggatttc 13576245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 94 - 317
Target Start/End: Original strand, 34571445 - 34571668
Alignment:
Q  94 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 193  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||    
T  34571445 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 34571544  T
Q  194 cttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgag 293  Q
    | ||||||||   ||| |||   ||||| ||||  | ||| || |||||||||||||| ||||||||||| |  |  |||||||||||||| |  || |     
T  34571545 cctgaagtgcgagaaccgcatggctctggaatcgtaaatccgtcttgaaatcctgagcaatttcacgaacaagacgctggaatggaagtttacggatcaa 34571644  T
Q  294 aagctcagtgctcttctgatactt 317  Q
    ||| || || ||||||||||||||    
T  34571645 aagttcggtactcttctgatactt 34571668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 34562651 - 34562760
Alignment:
Q  94 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 193  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||    
T  34562651 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 34562750  T
Q  194 cttgaagtgc 203  Q
    | ||||||||    
T  34562751 cctgaagtgc 34562760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 317
Target Start/End: Original strand, 34578913 - 34579136
Alignment:
Q  94 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 193  Q
    |||||||||||||||||   ||||| ||| |  |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| |||||  | ||||    
T  34578913 gcaagttgaatatccttcaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgctt 34579012  T
Q  194 cttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgag 293  Q
    | ||||||||   ||| |||   ||||| ||||| | ||| || ||||||| |||||| ||||||||||| |  |  |||||||||||||| | ||| |     
T  34579013 cctgaagtgcgagaactgcatggctctggaatctcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaa 34579112  T
Q  294 aagctcagtgctcttctgatactt 317  Q
    ||| || || | ||||||||||||    
T  34579113 aagttcggtacccttctgatactt 34579136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 317
Target Start/End: Original strand, 34584662 - 34584885
Alignment:
Q  94 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 193  Q
    |||||||||||||||||   ||||| ||| |  |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| |||||  | ||||    
T  34584662 gcaagttgaatatccttcaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgctt 34584761  T
Q  194 cttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgag 293  Q
    | ||||||||   ||| |||   ||||| ||||| | ||| || ||||||| |||||| ||||||||||| |  |  |||||||||||||| | ||| |     
T  34584762 cctgaagtgcgagaactgcatggctctggaatctcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaa 34584861  T
Q  294 aagctcagtgctcttctgatactt 317  Q
    ||| || || | ||||||||||||    
T  34584862 aagttcggtacccttctgatactt 34584885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 66 - 323
Target Start/End: Original strand, 43479645 - 43479902
Alignment:
Q  66 ctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaac 165  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| ||||||    
T  43479645 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaac 43479744  T
Q  166 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 265  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||| | |||||    
T  43479745 aaaccaacaagataagcttcagcggcttcttgaagagcagaaacagcgctactctggaacctgagatcagttttgaaatcctgagcgatttccctaacca 43479844  T
Q  266 atctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat 323  Q
    |||||||||||||||| ||||| ||||||||||| || |||||||||||||| |||||    
T  43479845 atctttggaatggaagcttcctgatgagaagctcggtactcttctgatacttgcggat 43479902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 66 - 323
Target Start/End: Complemental strand, 38799652 - 38799395
Alignment:
Q  66 ctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaac 165  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||| || || || |||||     
T  38799652 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 38799553  T
Q  166 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 265  Q
    | |||||| |  || |||||||||||||||||||| || ||||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| |    
T  38799552 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaa 38799453  T
Q  266 atctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat 323  Q
      | ||||||||||||||| |  ||||||||||||||||||||||||||||| |||||    
T  38799452 gacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggat 38799395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 66 - 323
Target Start/End: Original strand, 38821865 - 38822122
Alignment:
Q  66 ctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaac 165  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||| || || || |||||     
T  38821865 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 38821964  T
Q  166 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 265  Q
    | |||||| |  || |||||||||||||||||||| || ||||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| |    
T  38821965 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaa 38822064  T
Q  266 atctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat 323  Q
      | ||||||||||||||| |  ||||||||||||||||||||||||||||| |||||    
T  38822065 gacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggat 38822122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 94 - 323
Target Start/End: Complemental strand, 25865829 - 25865600
Alignment:
Q  94 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 193  Q
    ||||| ||||||||||| |||||||| || || |||||||||||||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||    
T  25865829 gcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcacacaaattagtatcctcaaacaatcccacaagataagcctcagcagctt 25865730  T
Q  194 cttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgag 293  Q
    | |||||||||  |||||||  |||||||||||| ||||| ||||||||||||||||| ||||||||||| |  |  ||||||||||| || |  || |     
T  25865729 cctgaagtgcaagaacagcatgactctgaaatctcagatccgttttgaaatcctgagcaatttcacgaacaagacgctggaatggaagcttacggatcaa 25865630  T
Q  294 aagctcagtgctcttctgatactttcggat 323  Q
    ||||||||| |||||||||||||| |||||    
T  25865629 aagctcagtactcttctgatacttacggat 25865600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 94 - 347
Target Start/End: Complemental strand, 26592297 - 26592044
Alignment:
Q  94 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 193  Q
    ||||| ||||||||||||||||| || ||||| | ||||||||||||||| || || || |||||||||||||| ||||||||||| || || || ||||    
T  26592297 gcaagctgaatatccttaggcatgatagtaacacgcttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 26592198  T
Q  194 cttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgag 293  Q
    |||| || || || ||||||   |||||||| | |||||| || |||||||||||||| || |||||||| |  |  ||||| |||||||| | ||||||    
T  26592197 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcctgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgag 26592098  T
Q  294 aagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctgg 347  Q
    ||| || ||||||||||| ||||| ||||| || || | |||||| ||||||||    
T  26592097 aagttcggtgctcttctggtacttgcggatctcacggagtgcgacggttcctgg 26592044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 281
Target Start/End: Complemental strand, 41944074 - 41943886
Alignment:
Q  93 tgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagct 192  Q
    |||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||| | ||| |||||||||||||| ||||| ||||| ||||| || |||    
T  41944074 tgcaagttgaatgtcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgct 41943975  T
Q  193 tcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaag 281  Q
    || |||||||||  |||||||   ||||| ||||||||||| || |||||||| ||||| ||||||||||| |  | ||||||||||||    
T  41943974 tcctgaagtgcaagaacagcatggctctggaatctgagatccgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaag 41943886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 38807153 - 38807046
Alignment:
Q  66 ctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaac 165  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| || ||  |||| || ||||||||     
T  38807153 ctaagccctctcgcctctgattcttcttgcaagttgaatgtccttaggcatgatagtaactctcttagcatgaattgcgcacggatttgtgtcctcaaag 38807054  T
Q  166 aaaccaac 173  Q
    | ||||||    
T  38807053 agaccaac 38807046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 44344078 - 44343977
Alignment:
Q  100 tgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaa 199  Q
    ||||||||||| |||||||| || || |||||||||||||||||||| | ||| |||||||||||||| || || ||||| || ||||| ||||| ||||    
T  44344078 tgaatatccttgggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagctgcttcctgaa 44343979  T
Q  200 gt 201  Q
    ||    
T  44343978 gt 44343977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 64 - 326
Target Start/End: Complemental strand, 31170 - 30909
Alignment:
Q  64 ttctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaa 163  Q
    |||||||||||||| || |  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||    
T  31170 ttctaagccctttcaccacgaattcttcttgcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaa 31071  T
Q  164 acaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaac 263  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||||||    
T  31070 acaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctctggaatctgagataggttttgaaatcctgagcgatttcacgaac 30971  T
Q  264 caatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttc 326  Q
     |  | ||||||| ||||||| || || |||||||||||||||||||| ||||| ||||||||    
T  30970 aagacgttggaat-gaagttttcttatcagaagctcagtgctcttctggtacttgcggatttc 30909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 65 - 323
Target Start/End: Complemental strand, 12531650 - 12531392
Alignment:
Q  65 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaa 164  Q
    |||||||||| |||||||||||||| |  || |||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||| ||||| |||||    
T  12531650 tctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaa 12531551  T
Q  165 caaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacc 264  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| || || |||| |||||| ||||||||||| |||||||||||||||||     
T  12531550 caaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaaca 12531451  T
Q  265 aatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat 323  Q
    |  || ||||||||||| ||||| || |||||||| ||||||||||| ||||| |||||    
T  12531450 agcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggat 12531392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 65 - 323
Target Start/End: Original strand, 12546969 - 12547227
Alignment:
Q  65 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaa 164  Q
    ||||||| || |||||||| ||||| |  ||||||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||| ||||| |||||    
T  12546969 tctaagctctctcgcctctaattctgcgagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaa 12547068  T
Q  165 caaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacc 264  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| || || |||| |||||| ||||||||||| |||||||||||||||||     
T  12547069 caaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaaca 12547168  T
Q  265 aatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat 323  Q
    |  || ||||||||||| ||||| || |||||||| ||||||||||| ||||| |||||    
T  12547169 agcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggat 12547227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 65 - 247
Target Start/End: Original strand, 9866627 - 9866809
Alignment:
Q  65 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaa 164  Q
    |||||||||| | |||||||||||||   || ||||| || |||| ||||||||| ||||||||||||||||||||||||||||| || ||||| |||||    
T  9866627 tctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaa 9866726  T
Q  165 caaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcct 247  Q
    |||||||||||||||  ||| ||||||||||||||| ||||||||| |||||||||  || || |||||||| ||||||||||    
T  9866727 caaaccaacaagatagtctttagcagcttcttgaagagcagaaacatcactactctagaacctcagatcagtcttgaaatcct 9866809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 65 - 257
Target Start/End: Complemental strand, 9894800 - 9894610
Alignment:
Q  65 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaa 164  Q
    |||||||||| |||||||||||||| |  ||||||| ||||||||| | |||||| ||||||| ||||||||||||||| |||| ||| ||||| |||||    
T  9894800 tctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactcacttagcatgaatagcgcaaatattagtatcttcaaa 9894702  T
Q  165 caaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttc 257  Q
    ||||| ||||| | | |||||| || |||||||||  |||||||||||||||||||| || || ||| |||| ||| |||||||||| |||||    
T  9894701 caaactaacaaaacaagcttcaacaacttcttgaacagcagaaacagcactactctggaacctcagaccagtcttg-aatcctgagcaatttc 9894610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 9870102 - 9870004
Alignment:
Q  102 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaag 200  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||| | |||||||||||||| ||| |||||| |||||||||||||    
T  9870102 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttcaacagcttcttgaag 9870004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 212
Target Start/End: Complemental strand, 38735625 - 38735528
Alignment:
Q  115 ataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagc 212  Q
    ||||| ||||| |||||||||||||||| |||||| || ||||| ||||||||||||||||||||  |||||    ||| |||||| |||||||||||    
T  38735625 ataattgtaaccctcttagcatgaatagtacaaaggttagtatcttcaaacaaaccaacaagataaacttcaatgactttttgaagagcagaaacagc 38735528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 9903647 - 9903568
Alignment:
Q  65 tctaagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagca 144  Q
    ||||| |||| ||||||  ||||||| | |||||||||||||||||||| ||||| ||||| || ||||||| |||||||    
T  9903647 tctaaaccctctcgcctgcgattcttttggcaagttgaatatccttaggtataatagtaacgcttttagcataaatagca 9903568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 12538724 - 12538675
Alignment:
Q  97 agttgaatatccttaggcataatggtaactctcttagcatgaatagcaca 146  Q
    ||||||||| | |||||||| || ||||||||||||||||||||||||||    
T  12538724 agttgaatacctttaggcatgatagtaactctcttagcatgaatagcaca 12538675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 67 - 329
Target Start/End: Complemental strand, 24860702 - 24860440
Alignment:
Q  67 taagccctttcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaaca 166  Q
    |||||||| |||||||||||||| |  || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |    
T  24860702 taagccctctcgcctctgattctgcgagcgagttgaatatccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaaga 24860603  T
Q  167 aaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaa 266  Q
      ||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| || | |||||| ||||||||||| ||||||||||||||||| |     
T  24860602 gtccaacgagataagcttcagcagcttcttgaagagcagaaacagcgctactctggaaacggagatcggttttgaaatcttgagcgatttcacgaacgag 24860503  T
Q  267 tctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcg 329  Q
     | ||||||||||||||| |  ||||||||||| ||||| || || ||||| |||||||||||    
T  24860502 acgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggatttcgcg 24860440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 348
Target Start/End: Complemental strand, 34748875 - 34748630
Alignment:
Q  103 atatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtg 202  Q
    |||||||||||||| || || || | ||| |||||||| ||||| || || ||||||||||| | |||||| ||||| || ||||| |||||||| || |    
T  34748875 atatccttaggcatgatagtgacacgcttggcatgaatggcacagaggttagtatcctcaaagagaccaacgagataagcctcagccgcttcttgcagcg 34748776  T
Q  203 cagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagt 302  Q
    | || || ||    ||||| || | ||||||||| ||||||||||||||||| ||||||||||  |  ||||| || ||||| |  ||||| || || ||    
T  34748775 ccgacacggcggagctctggaaacggagatcagtcttgaaatcctgagcgatctcacgaaccagacgctggaaggggagtttgcggatgaggagttcggt 34748676  T
Q  303 gctcttctgatactttcggatttcgcgcaatgcgactgttcctggt 348  Q
    ||||||||| ||||| ||||| || || |  ||||| |||||||||    
T  34748675 gctcttctggtacttacggatctcacgtagagcgacggttcctggt 34748630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 53290832 - 53290749
Alignment:
Q  127 ctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaaca 210  Q
    |||||||||||||| | |||||| || ||||| |||||||||||||||||||| |||||| |  ||| |||||| |||||||||    
T  53290832 ctcttagcatgaatggtacaaaggttagtatcttcaaacaaaccaacaagataagcttcaacgactttttgaagagcagaaaca 53290749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 44771097 - 44771137
Alignment:
Q  223 aatctgagatcagttttgaaatcctgagcgatttcacgaac 263  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  44771097 aatctgagatcggttttgaaatcctgagcgatttcacgaac 44771137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 40035909 - 40035830
Alignment:
Q  238 ttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactt 317  Q
    ||||| |||||||| |||||||||||||| || |||||||| || ||||| || |  |||||||| ||||||||||||||    
T  40035909 ttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatactt 40035830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 40036153 - 40036062
Alignment:
Q  106 tccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttg 197  Q
    ||||| |||||||| ||||||| ||| ||||| |||||||| |  || || |||||||| | |||||||||||| ||||||||||| |||||    
T  40036153 tccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 40036062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 7594130 - 7594240
Alignment:
Q  94 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagctt 193  Q
    ||||| ||||||||||| |||||||| || || |||||||||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||| ||||    
T  7594130 gcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaacaatccaaccaggtaagcctcagctgctt 7594229  T
Q  194 cttgaagtgca 204  Q
    | |||||||||    
T  7594230 cctgaagtgca 7594240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 275
Target Start/End: Original strand, 17769233 - 17769342
Alignment:
Q  166 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 265  Q
    |||||||||||||| ||| ||   ||||||||||| |||||||||| |||||||| ||||| |||||| |||||||||||||  | |||||| | ||| |    
T  17769233 aaaccaacaagataagctacactggcttcttgaagagcagaaacagtactactctaaaatcggagatctgttttgaaatccttcgtgatttctctaacaa 17769332  T
Q  266 atctttggaa 275  Q
    ||||||||||    
T  17769333 atctttggaa 17769342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 275
Target Start/End: Original strand, 1539185 - 1539294
Alignment:
Q  166 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 265  Q
    |||||||||||||| ||| ||   ||||||||||| | |||||||| |||||||| ||||| |||||| |||||||||| ||  | |||||| | ||| |    
T  1539185 aaaccaacaagataagctacactggcttcttgaagagaagaaacagtactactctaaaatcggagatctgttttgaaatacttcgtgatttctctaacaa 1539284  T
Q  266 atctttggaa 275  Q
    ||||||||||    
T  1539285 atctttggaa 1539294  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 274
Target Start/End: Complemental strand, 27440954 - 27440846
Alignment:
Q  166 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 265  Q
    |||||||||||||| ||| ||   ||||||||||| |||||||||   ||||||| ||||| |||||| |||||||||||||  | |||||| | ||| |    
T  27440954 aaaccaacaagataagctacactggcttcttgaagagcagaaacaatgctactctaaaatcggagatctgttttgaaatccttcgtgatttctctaacaa 27440855  T
Q  266 atctttgga 274  Q
    |||||||||    
T  27440854 atctttgga 27440846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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