View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_88 (Length: 351)
Name: NF10140A_low_88
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_88 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 4 - 351
Target Start/End: Original strand, 21218871 - 21219218
Alignment:
| Q |
4 |
atatatcttcattggggtaacctgccttgcttcgcaacagtcaggaattatgagctctattcccttaggatccgctgagcacagaagacaaaaaacaaat |
103 |
Q |
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| T |
21218871 |
atatatcttcattggggtaacctgccttgcttcgcaacagtcaggaattatgagctctattcccttaggatccgctgagcacagaagacaaaaaacaaat |
21218970 |
T |
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| Q |
104 |
aattacattagggatgtatattacaatgacacaaaatcttatagaatcgatgcatacatacacacaaaacaataaataaaatgatccattaaccaggata |
203 |
Q |
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| T |
21218971 |
aattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacagaacaataaataaaatgatccattaaccaggata |
21219070 |
T |
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| Q |
204 |
tatcagcacagctgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatcagtgaatcaagtactatagttgcac |
303 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219071 |
tatcagcacagttgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatcagtgaatcaagtactatagttgcac |
21219170 |
T |
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| Q |
304 |
aaaacaactatttagtaaaatataatcaagattccaggagtatgatga |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219171 |
aaaacaactatttagtaaaatataatcaagattccaggagtatgatga |
21219218 |
T |
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