View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_89 (Length: 348)

Name: NF10140A_low_89
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_89
NF10140A_low_89
[»] chr3 (1 HSPs)
chr3 (197-348)||(1109022-1109169)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 197 - 348
Target Start/End: Complemental strand, 1109169 - 1109022
Alignment:
Q  197 aatatatgctttcttcttcacatccttatacgtatttctctgcacatgatctgtagcatctgcaggaaggggttccatgccattattgatctcaatctgt 296  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1109169 aatatatgctttcttcttcacatcgttatacatatttctctg-ac---atctgtagcatctgcaggaaggggttccatgccattattgatctcaatctgt 1109074  T
Q  297 tcagacacattgtgaactgcaaagatcacattcatatgtctgaaccatcgtt 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1109073 tcagacacattgtgaactgcaaagatcacattcatatgtctgaaccatcgtt 1109022  T

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