View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_92 (Length: 346)
Name: NF10140A_low_92
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_92 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 3202815 - 3203154
Alignment:
| Q |
1 |
acgccgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccattggcattaccaaagacattagcaccttttacgggccttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3202815 |
acgccgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccattggcattaccaaagacattagcacctttcacgggccttc |
3202914 |
T |
|
| Q |
101 |
cagcggccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggaggaatttacgatgttccttgctccaatgatcttcttgttacaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202915 |
cagcggccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaat |
3203014 |
T |
|
| Q |
201 |
cctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgtcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203015 |
cctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgtcc |
3203114 |
T |
|
| Q |
301 |
agcattccaattatgatccctttaccttgattggaatttc |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3203115 |
agcattccaattatgatccctttaccttgattggaatttc |
3203154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 6 - 340
Target Start/End: Original strand, 3208794 - 3209128
Alignment:
| Q |
6 |
gcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccattggcattaccaaagacattagcaccttttacgggccttccagcg |
105 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3208794 |
gcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcg |
3208893 |
T |
|
| Q |
106 |
gccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggaggaatttacgatgttccttgctccaatgatcttcttgttacaaatcctct |
205 |
Q |
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|
||||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||| | | |||||||||||||||||||||||||||||||||||| |
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| T |
3208894 |
gccgtgctggctgtgtgagttccatggccaacatcatcgtatggaagggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctct |
3208993 |
T |
|
| Q |
206 |
cccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgtccagcat |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| | || |
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| T |
3208994 |
cccctgtgaattcacaatggccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgat |
3209093 |
T |
|
| Q |
306 |
tccaattatgatccctttaccttgattggaatttc |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
3209094 |
tccaattatgatccctttaccttgattggaatttc |
3209128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 6 - 339
Target Start/End: Original strand, 3216733 - 3217075
Alignment:
| Q |
6 |
gcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccattggcattaccaaagacattagcaccttttacgggccttccagcg |
105 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||| |||| ||||| || || || || |||||||| || || | ||| |||||||||| |
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| T |
3216733 |
gcatactttgtagattgccaagtgtgcatctggtgccatgcctgttgccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagca |
3216832 |
T |
|
| Q |
106 |
gccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggaggaattt---------acgatgttccttgctccaatgatcttcttgttac |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||| || ||||| |||| ||||||||||||||||| ||||||||||| |
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| T |
3216833 |
gccgtgctggccgtgtgagttccgtggccaacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttac |
3216932 |
T |
|
| Q |
197 |
aaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgt |
296 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||| ||||||||| |
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| T |
3216933 |
aaatcctttcccctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgt |
3217032 |
T |
|
| Q |
297 |
gtccagcattccaattatgatccctttaccttgattggaattt |
339 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
3217033 |
gtccaggattccaattatgatccctttaccgagattggaattt |
3217075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 3232106 - 3232140
Alignment:
| Q |
211 |
gtgaattcacaatggccattccattttgcaggtgg |
245 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
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| T |
3232106 |
gtgaattcacaatggcctttccattttgcaggtgg |
3232140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 3177934 - 3177901
Alignment:
| Q |
212 |
tgaattcacaatggccattccattttgcaggtgg |
245 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
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|
| T |
3177934 |
tgaattcacaatggcctttccattttgcaggtgg |
3177901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 3221873 - 3221926
Alignment:
| Q |
211 |
gtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcg |
264 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| | |||||||| |||||| |
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| T |
3221873 |
gtgaattcgcaatggcctttccattttgcaggtggtggcggcattccttcatcg |
3221926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 3240906 - 3240939
Alignment:
| Q |
212 |
tgaattcacaatggccattccattttgcaggtgg |
245 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |
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|
| T |
3240906 |
tgaattcacaatggcctttccattttgcaggtgg |
3240939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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