View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_94 (Length: 345)

Name: NF10140A_low_94
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_94
NF10140A_low_94
[»] chr4 (2 HSPs)
chr4 (7-330)||(36170376-36170699)
chr4 (279-330)||(1286343-1286394)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 36170376 - 36170699
Alignment:
Q  7 gttggtgttgaggaagttaagagatttatggttgaggaggatgcggtgtcgacttttatcaggctagtgaaatcaaaggaggaagcaattcaggtgaatt 106  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36170376 gttggtgttgaggaagttaagagattcatggttgaggaggatgcggtgtcgacttttatcaggctagtgaaatcaaaggaggaagcaattcaggtgaatt 36170475  T
Q  107 caatagggttcattcagaatattgcctttggagatgagttggttaggcaaacggtgattagagaaggcggaatccgtgctttgttacgtgttttagatcc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36170476 caatagggttcattcagaatattgcctttggagatgagttggttaggcaaatggtgattagagaaggcggaatccgtgctttgttacgtgttttagatcc 36170575  T
Q  207 gaaatggtcatattcttcaaaaacaaaggaaataacaatgagggctattgaaagtttgtgttttacttcatctagctctgtaagtattttaatgagttat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36170576 gaaatggtcatattcttcaaaaacaaaggaaataacaatgagggctattgaaagtttgtgttttacttcatctagctctgtaagtattttaatgagttat 36170675  T
Q  307 ggttttgtggatcagttgctatat 330  Q
    ||||||||||||||||||||||||    
T  36170676 ggttttgtggatcagttgctatat 36170699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 1286394 - 1286343
Alignment:
Q  279 tagctctgtaagtattttaatgagttatggttttgtggatcagttgctatat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1286394 tagctctgtaagtattttaatgagttatggttttgtggatcagttgctatat 1286343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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