View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_96 (Length: 344)
Name: NF10140A_low_96
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_96 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 49 - 344
Target Start/End: Original strand, 20885996 - 20886291
Alignment:
| Q |
49 |
gcatgcctgcgcagctgcgcctaatatacatgatagatagcctatataagttataatcaatcagtctactaatacgaatggcccagcatgcttgttgata |
148 |
Q |
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| T |
20885996 |
gcatgcctgcgcggctgcgcctaatatacatgatagatagcctatataagttataatcaatcagtctactagtacgaatggcccagcatgcttgttgata |
20886095 |
T |
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| Q |
149 |
ttctttcacaaagacaaaccagcaaaaagcaactccaactcctgctcctgagatatagttctctgaaataaaatggtaacagtttaatacaattaatcat |
248 |
Q |
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| T |
20886096 |
ttctttcacaaagacaaaccagcaaaaagcaactccaactcctgctcctgagatatagttctctgaaataaaacggtaacagtttaatacaattaatcat |
20886195 |
T |
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| Q |
249 |
tcaaggtttaccgaaaaatatcacttttaggctgaaagacattatcttgaaactcttataatagaaagatatatgacagaaacaacccatagatga |
344 |
Q |
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| T |
20886196 |
tcaaggtttaccgaaaaatatcacttttaggctgaaagacattatcttgaaactcttataatagaaagatatatgacagaaacaacccatagatga |
20886291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20885881 - 20885931
Alignment:
| Q |
1 |
aatatcattaggaacatttgatttttatacaaaccactttaaagtcatgca |
51 |
Q |
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| T |
20885881 |
aatatcattaggaacatttgacttttacacaaaccactttaaagtcatgca |
20885931 |
T |
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