View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_97 (Length: 344)
Name: NF10140A_low_97
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_97 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 8669342 - 8669674
Alignment:
| Q |
1 |
atggtatggatctaactattttatgttaattacttactaaaa-attgaaattatatagactttttgtatacgtaggaaaataaaagaatgaccaaagtag |
99 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8669342 |
atggtatggatctaactatattatgttaattacttactaaaaaattgaaattatatagactttttgtatacataggaaaataaaagaatgaccaaagtag |
8669441 |
T |
|
| Q |
100 |
aaagcaacgaacggttatttatggtaagcaataaataaataaatgcaattatcgttgattgatgtgagatctgaggagaacaaaagcaaaattggtggtt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8669442 |
aaagcaacgaacggttatttatggtaagcaataaataaataaatgcaattatcgttgattgatgtgagatctgaggagaacaaaagcaaaattggtggtt |
8669541 |
T |
|
| Q |
200 |
atgtagtaactagggaggtcagatctaagaataataaataatgcagaaagtataattacgaaattaaagcgaaaaatgagtgagatcgagatggatatgg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8669542 |
atgtagtaactagggaggtcagatctaagaataataaataatgcagaaagtataattacgaaattaaagcgaaaaatgagagagatcgagatggatatgg |
8669641 |
T |
|
| Q |
300 |
atatagttaccctttcattctgtggaaatcgat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8669642 |
atatagttaccctttcattctgtggaaatcgat |
8669674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University