View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_98 (Length: 342)

Name: NF10140A_low_98
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_98
NF10140A_low_98
[»] chr6 (27 HSPs)
chr6 (10-342)||(4564413-4564745)
chr6 (10-274)||(4592933-4593199)
chr6 (14-249)||(4617728-4617963)
chr6 (23-249)||(4602504-4602730)
chr6 (172-249)||(4506718-4506795)
chr6 (167-249)||(3172597-3172679)
chr6 (161-249)||(4481543-4481631)
chr6 (161-249)||(4517171-4517259)
chr6 (172-249)||(4514315-4514392)
chr6 (177-249)||(4489555-4489627)
chr6 (176-249)||(4461988-4462061)
chr6 (160-249)||(4470652-4470741)
chr6 (160-251)||(4557974-4558065)
chr6 (160-247)||(4586485-4586572)
chr6 (169-251)||(4571830-4571912)
chr6 (160-245)||(4561353-4561438)
chr6 (160-245)||(4575157-4575242)
chr6 (212-248)||(4266358-4266394)
chr6 (18-69)||(4299195-4299246)
chr6 (160-251)||(4612910-4613001)
chr6 (172-249)||(4484033-4484111)
chr6 (185-251)||(4580915-4580981)
chr6 (20-69)||(4517030-4517079)
chr6 (20-69)||(4568753-4568802)
chr6 (171-243)||(4259354-4259426)
chr6 (10-50)||(4266559-4266599)
chr6 (169-225)||(4599028-4599084)
[»] scaffold0199 (1 HSPs)
scaffold0199 (27-249)||(183-405)
[»] chr8 (4 HSPs)
chr8 (27-249)||(1674946-1675168)
chr8 (181-249)||(20863037-20863105)
chr8 (18-69)||(20863217-20863268)
chr8 (185-247)||(16685482-16685544)
[»] chr3 (1 HSPs)
chr3 (11-244)||(1281817-1282050)
[»] chr5 (2 HSPs)
chr5 (212-247)||(24103903-24103938)
chr5 (10-50)||(24103698-24103738)
[»] scaffold0288 (1 HSPs)
scaffold0288 (161-243)||(2918-3000)


Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 4564413 - 4564745
Alignment:
Q  10 catagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcaccaattaca 109  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  4564413 catagaggagagagcatttattacatcactctaaagttcatggaaagtattcaaaacaattgtagagtctccaagaactttatcagccgcatcaattaca 4564512  T
Q  110 aagtctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagttt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4564513 aagtctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaaccgaaagtttttcaaacctggaatccaatctacattagttt 4564612  T
Q  210 ccaaatatccatttgttagatagctctcatctgcatatcaaaagtatcagttaatatcttgaaggttatacatacatccgtcaatacatgagtattttgt 309  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  4564613 ccaaatatccatttgttagatagctctgatctgcatatcaaatgtatcagttaatatcttgaaggttatacatacatccgtacatacatgagtattttgt 4564712  T
Q  310 tttcgacaaaaacatacatatataataaggtat 342  Q
    |||||||||||||||||||||||||||||||||    
T  4564713 tttcgacaaaaacatacatatataataaggtat 4564745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 4592933 - 4593199
Alignment:
Q  10 catagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcaccaattaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |  | || ||||||||||| || ||||||||    
T  4592933 catagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaataatagtagagtttttatgatctttatcagccacatcaattaca 4593032  T
Q  110 aagtctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagttt 209  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||   || ||||| || |||||||||||||||||||||||||||||||| |||||||    
T  4593033 aagtttaacataatatcatttggatctgttgtcctgatatagtcagcaatgtccttcaaccgaaagtttttcaaacctggaatccaatctactttagttt 4593132  T
Q  210 ccaaatatccatttgttagatagctctcatctgcatatcaaaagtatc--agttaatatcttgaagg 274  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |  |||||||| ||||||||    
T  4593133 ccaaatatccatttgttagataactctcatctgcatatcaaaagtagcaaagttaatagcttgaagg 4593199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 4617728 - 4617963
Alignment:
Q  14 gaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcaccaattacaaagt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||     ||||  ||| ||  |  | || |  || |    
T  4617728 gaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagtgtctttgttaactcgatctgcaacttctataaagaatt 4617827  T
Q  114 ctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaa 213  Q
    ||||||||||||||||||||| |||||||||||||  ||||| ||| ||||| || ||||||||||||||||| |||||||||||||| |||||||||||    
T  4617828 ctaacataatatcatttggatttgttgtcctgataaagtcaacgatgtccttcaaccgaaagtttttcaaaccgggaatccaatctactttagtttccaa 4617927  T
Q  214 atatccatttgttagatagctctcatctgcatatca 249  Q
    | |||||||||||||||| |||||||||||||||||    
T  4617928 acatccatttgttagataactctcatctgcatatca 4617963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 249
Target Start/End: Original strand, 4602504 - 4602730
Alignment:
Q  23 gcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcaccaattacaaagtctaacataa 122  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||| |||||||||| |  || | |||| ||     |||  |  || |||| |||||    
T  4602504 gcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataa 4602603  T
Q  123 tatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatt 222  Q
    ||||||||||||||||||||||||||  |||||  || ||||| || |||||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  4602604 tatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatt 4602703  T
Q  223 tgttagatagctctcatctgcatatca 249  Q
    ||||||||| || ||||||||||||||    
T  4602704 tgttagataactatcatctgcatatca 4602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 4506718 - 4506795
Alignment:
Q  172 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 249  Q
    ||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  4506718 aaagtttctcaaacctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcatatca 4506795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 3172597 - 3172679
Alignment:
Q  167 aatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 249  Q
    |||| |||||||||||||||||||||||| || ||  |||| ||||||||||||||||||  ||| |||||||||||||||||    
T  3172597 aatctaaagtttttcaaacctggaatccagtcaactatagtgtccaaatatccatttgtttcataactctcatctgcatatca 3172679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 4481543 - 4481631
Alignment:
Q  161 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 249  Q
    ||||| |||| |||||||||||||||||||||||| |||||  | |  ||||||||||||| ||||| ||| |||||||||||||||||    
T  4481543 tccttcaatctaaagtttttcaaacctggaatccagtctactgttgcgtccaaatatccatctgttaaataactctcatctgcatatca 4481631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 4517171 - 4517259
Alignment:
Q  161 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 249  Q
    ||||||| || |||||||  ||||||||||||||| || || ||||| ||||||||||||||||| | ||| |||||||||||||||||    
T  4517171 tcctttagtctaaagtttcccaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatca 4517259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 4514392 - 4514315
Alignment:
Q  172 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 249  Q
    |||||||  ||||||||||||||| || || ||||| ||||||||||||||||| | ||| |||||||||||||||||    
T  4514392 aaagtttcgcaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatca 4514315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 4489627 - 4489555
Alignment:
Q  177 ttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 249  Q
    ||||||||||||||||||| || || ||||| ||||||| ||||| ||||||||  |||||||||||||||||    
T  4489627 ttttcaaacctggaatccattcaactttagtgtccaaatttccatctgttagattactctcatctgcatatca 4489555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 4461988 - 4462061
Alignment:
Q  176 tttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 249  Q
    |||||||||||||||||||| || || | ||| || |||||||||| |||||||||  ||||||||||||||||    
T  4461988 tttttcaaacctggaatccagtcaacttcagtgtctaaatatccatctgttagataaatctcatctgcatatca 4462061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 4470652 - 4470741
Alignment:
Q  160 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 249  Q
    |||||| ||||  ||||||||||||||||||||||| || || | | | || |||||||||| | ||||||| |||||||||||||||||    
T  4470652 atccttcaatctgaagtttttcaaacctggaatccagtcaacttcaatgtcgaaatatccatctattagataactctcatctgcatatca 4470741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 4557974 - 4558065
Alignment:
Q  160 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 251  Q
    |||||| | ||||||||| | ||| |||||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||| ||| |||||    
T  4557974 atccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcagataactctcatctacatgtcaaa 4558065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 4586485 - 4586572
Alignment:
Q  160 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatat 247  Q
    |||||||| ||||||||| | ||| |||||||| || || || ||||| ||||||||||| ||||| ||||| |||| ||||||||||    
T  4586485 atcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactcttatctgcatat 4586572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 4571830 - 4571912
Alignment:
Q  169 tcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 251  Q
    ||||||||| ||||  ||||| || || || || ||||| ||||||||||| ||||| ||||| |||||||||||||||||||    
T  4571830 tcgaaagttcttcagtcctggcatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatatcaaa 4571912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 4561353 - 4561438
Alignment:
Q  160 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcat 245  Q
    |||||| ||||  ||||||||||||||||| ||||| || || || || |||| |||| ||||||||||||  |||||||||||||    
T  4561353 atccttcaatctgaagtttttcaaacctgggatccagtcaactttcgtgtccagatattcatttgttagatcactctcatctgcat 4561438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 4575157 - 4575242
Alignment:
Q  160 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcat 245  Q
    |||||| ||||  ||||||||||||||||| ||||| || |  || || ||||||||| ||||||||||||  |||||||||||||    
T  4575157 atccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcat 4575242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 4266394 - 4266358
Alignment:
Q  212 aaatatccatttgttagatagctctcatctgcatatc 248  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4266394 aaatatccatttgttagataactctcatctgcatatc 4266358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 4299246 - 4299195
Alignment:
Q  18 agagagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 69  Q
    |||||||||| ||||||||||||||||||||||   ||||||| ||||||||    
T  4299246 agagagcattcattacatcactctcaagttcatcataagtattaaaaacaat 4299195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 4613001 - 4612910
Alignment:
Q  160 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 251  Q
    |||||| | ||||||||| | ||| ||| |||| || || || ||||| ||||||||||| ||||| ||||| ||||||||||||| |||||    
T  4613001 atccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcatgtcaaa 4612910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 4484111 - 4484033
Alignment:
Q  172 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttg-ttagatagctctcatctgcatatca 249  Q
    ||||||||||||| |||||| ||| ||||| | ||| ||||||||| |||||| ||||||| |||| || |||||||||    
T  4484111 aaagtttttcaaatctggaacccagtctacttcagtgtccaaatatacatttgcttagataactcttatttgcatatca 4484033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 4580915 - 4580981
Alignment:
Q  185 cctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 251  Q
    |||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||| | ||||||    
T  4580915 cctggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctgtacatcaaa 4580981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 4517030 - 4517079
Alignment:
Q  20 agagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 69  Q
    |||||||||||||||||| ||||||||||||   ||||||| ||||||||    
T  4517030 agagcatttattacatcattctcaagttcatcagaagtattgaaaacaat 4517079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 4568753 - 4568802
Alignment:
Q  20 agagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 69  Q
    ||||| |||| |||||||||||||||||||||  ||||||| ||||||||    
T  4568753 agagcctttactacatcactctcaagttcattataagtattgaaaacaat 4568802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 4259426 - 4259354
Alignment:
Q  171 gaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgc 243  Q
    ||||||| ||||| || ||||  || ||||| || || |||| ||||||||||||||||||||||| ||||||    
T  4259426 gaaagttcttcaatccaggaacacagtctactttggtatccagatatccatttgttagatagctcttatctgc 4259354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 4266599 - 4266559
Alignment:
Q  10 catagaggagagagcatttattacatcactctcaagttcat 50  Q
    ||||||| |||||||||| || |||||||||||||||||||    
T  4266599 catagagtagagagcattcataacatcactctcaagttcat 4266559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 4599028 - 4599084
Alignment:
Q  169 tcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgt 225  Q
    ||||||||||| ||  || ||||| |||||||| ||||||||||||||||| |||||    
T  4599028 tcgaaagttttgcagtccaggaatacaatctactttagtttccaaatatccgtttgt 4599084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 183 - 405
Alignment:
Q  27 ttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcaccaattacaaagtctaacataatatc 126  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||  || |||||| ||||||||||||||||||    
T  183 ttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatc 282  T
Q  127 atttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgtt 226  Q
    ||||||||| ||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||| || || || |||||||||||||||||||||    
T  283 atttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgtt 382  T
Q  227 agatagctctcatctgcatatca 249  Q
    ||||  |||||||||||||||||    
T  383 agatgtctctcatctgcatatca 405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 1674946 - 1675168
Alignment:
Q  27 ttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcaccaattacaaagtctaacataatatc 126  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||  || |||||| ||||||||||||||||||    
T  1674946 ttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatc 1675045  T
Q  127 atttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgtt 226  Q
    ||||||||| ||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||| || || || |||||||||||||||||||||    
T  1675046 atttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgtt 1675145  T
Q  227 agatagctctcatctgcatatca 249  Q
    ||||  |||||||||||||||||    
T  1675146 agatgtctctcatctgcatatca 1675168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 20863105 - 20863037
Alignment:
Q  181 caaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 249  Q
    |||||||||||||| ||| || ||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  20863105 caaacctggaatccgatcaactttagtctccaaatatccatttgttagataactctcatctgtatatca 20863037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 20863268 - 20863217
Alignment:
Q  18 agagagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 69  Q
    ||||| |||| || |||||||||||||| |||||||||||||| ||||||||    
T  20863268 agagaacattcataacatcactctcaagctcattgaaagtattgaaaacaat 20863217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 16685544 - 16685482
Alignment:
Q  185 cctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatat 247  Q
    |||||||| || || || ||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  16685544 cctggaatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatat 16685482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 1281817 - 1282050
Alignment:
Q  11 atagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcaccaattacaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |  |||| |||| |||    |||| |  |    
T  1281817 atagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagagtctctattaactctatctgccatttcaataaaga 1281916  T
Q  111 agtctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttc 210  Q
    | |||||||||||||| ||| ||||| |||||||||||  |||||  |||||||| || || || |||||||||||||||||||||||||| || |||||    
T  1281917 attctaacataatatcgtttcgatctcttgtcctgataaagtcaacaatatccttcaaccggaaatttttcaaacctggaatccaatctacttttgtttc 1282016  T
Q  211 caaatatccatttgttagatagctctcatctgca 244  Q
    ||||||||||||||||||||| ||||||||||||    
T  1282017 caaatatccatttgttagataactctcatctgca 1282050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 24103903 - 24103938
Alignment:
Q  212 aaatatccatttgttagatagctctcatctgcatat 247  Q
    |||||||||||||||||||| |||||||||||||||    
T  24103903 aaatatccatttgttagataactctcatctgcatat 24103938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 24103698 - 24103738
Alignment:
Q  10 catagaggagagagcatttattacatcactctcaagttcat 50  Q
    ||||||| |||||||||| || |||||||||||||||||||    
T  24103698 catagagtagagagcattcataacatcactctcaagttcat 24103738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 3000 - 2918
Alignment:
Q  161 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgc 243  Q
    ||||||| |||||||||||||| ||| ||||| |||||||| ||  | |||||||||||| |||| | ||| || ||||||||    
T  3000 tcctttagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaataactatcatctgc 2918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University