View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140_2D_high_1 (Length: 525)

Name: NF10140_2D_high_1
Description: NF10140_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140_2D_high_1
NF10140_2D_high_1
[»] chr1 (22 HSPs)
chr1 (385-508)||(51048029-51048152)
chr1 (230-281)||(51048183-51048234)
chr1 (273-320)||(51048129-51048176)
chr1 (386-450)||(32454542-32454606)
chr1 (386-449)||(29232531-29232594)
chr1 (386-480)||(36184636-36184730)
chr1 (425-481)||(8261503-8261559)
chr1 (273-320)||(19727832-19727879)
chr1 (422-473)||(38674292-38674343)
chr1 (230-320)||(52860594-52860684)
chr1 (273-320)||(16660015-16660062)
chr1 (273-320)||(26940368-26940415)
chr1 (229-280)||(38674171-38674222)
chr1 (261-320)||(45707978-45708037)
chr1 (273-319)||(30196250-30196296)
chr1 (273-318)||(2167738-2167783)
chr1 (273-318)||(10616242-10616287)
chr1 (273-318)||(11240668-11240713)
chr1 (386-454)||(14591460-14591526)
chr1 (425-466)||(30196190-30196231)
chr1 (258-318)||(4851386-4851446)
chr1 (273-317)||(30724648-30724692)
[»] chr2 (20 HSPs)
chr2 (385-508)||(1775650-1775764)
chr2 (246-313)||(1775599-1775666)
chr2 (386-473)||(42578451-42578538)
chr2 (386-482)||(725038-725134)
chr2 (389-473)||(38587155-38587239)
chr2 (386-480)||(41321926-41322020)
chr2 (387-480)||(3462680-3462773)
chr2 (386-466)||(11738624-11738704)
chr2 (389-473)||(13863213-13863297)
chr2 (386-466)||(28634506-28634586)
chr2 (418-481)||(6364608-6364671)
chr2 (273-320)||(38376466-38376513)
chr2 (273-319)||(13070514-13070560)
chr2 (401-445)||(6762667-6762711)
chr2 (273-320)||(27337245-27337292)
chr2 (273-320)||(33618124-33618171)
chr2 (276-318)||(37472271-37472313)
chr2 (273-318)||(362992-363037)
chr2 (273-318)||(31570398-31570443)
chr2 (244-280)||(20298237-20298273)
[»] chr6 (11 HSPs)
chr6 (386-488)||(10365025-10365127)
chr6 (386-473)||(32818808-32818895)
chr6 (387-453)||(17772857-17772923)
chr6 (273-320)||(10365000-10365047)
chr6 (273-320)||(17772902-17772949)
chr6 (258-320)||(9244793-9244855)
chr6 (386-444)||(13887155-13887213)
chr6 (276-318)||(13887193-13887235)
chr6 (233-270)||(10364947-10364984)
chr6 (386-466)||(5045498-5045578)
chr6 (228-280)||(5492382-5492434)
[»] chr8 (31 HSPs)
chr8 (386-473)||(38783622-38783709)
chr8 (401-473)||(6295397-6295469)
chr8 (386-480)||(37513235-37513329)
chr8 (389-466)||(9636181-9636258)
chr8 (245-320)||(43323568-43323643)
chr8 (386-451)||(27756992-27757057)
chr8 (386-466)||(28860443-28860523)
chr8 (386-454)||(31666246-31666314)
chr8 (386-453)||(19439050-19439117)
chr8 (386-453)||(19575199-19575266)
chr8 (273-320)||(38783687-38783734)
chr8 (273-318)||(2116541-2116586)
chr8 (425-466)||(9579281-9579322)
chr8 (386-479)||(25980714-25980807)
chr8 (425-466)||(43325566-43325607)
chr8 (424-472)||(10405773-10405821)
chr8 (386-453)||(3955297-3955364)
chr8 (229-280)||(9636294-9636345)
chr8 (390-453)||(15358641-15358704)
chr8 (420-479)||(16047256-16047315)
chr8 (273-320)||(34649641-34649688)
chr8 (273-320)||(43325511-43325558)
chr8 (390-480)||(30265958-30266048)
chr8 (230-280)||(43325453-43325503)
chr8 (273-318)||(3955272-3955317)
chr8 (273-318)||(19439025-19439070)
chr8 (273-318)||(19575174-19575219)
chr8 (433-466)||(31289160-31289193)
chr8 (386-482)||(43638367-43638463)
chr8 (386-466)||(2116481-2116561)
chr8 (235-279)||(38783741-38783785)
[»] scaffold0031 (3 HSPs)
scaffold0031 (386-480)||(105598-105692)
scaffold0031 (386-480)||(1570-1664)
scaffold0031 (242-316)||(105542-105616)
[»] chr5 (21 HSPs)
chr5 (386-473)||(233503-233590)
chr5 (386-473)||(33656745-33656832)
chr5 (386-473)||(1156947-1157034)
chr5 (418-481)||(7440948-7441011)
chr5 (386-476)||(8223898-8223988)
chr5 (386-480)||(13760978-13761072)
chr5 (387-473)||(12464196-12464282)
chr5 (387-481)||(16363859-16363953)
chr5 (259-320)||(1157012-1157073)
chr5 (431-480)||(26077972-26078021)
chr5 (386-445)||(18515717-18515776)
chr5 (399-454)||(19962572-19962627)
chr5 (273-319)||(3326568-3326614)
chr5 (386-449)||(2683768-2683831)
chr5 (273-320)||(26647773-26647820)
chr5 (273-320)||(26919358-26919405)
chr5 (273-320)||(28905568-28905615)
chr5 (273-320)||(28941963-28942010)
chr5 (273-318)||(8205856-8205901)
chr5 (386-466)||(24905382-24905460)
chr5 (389-473)||(17888247-17888331)
[»] chr7 (20 HSPs)
chr7 (386-482)||(11202443-11202539)
chr7 (386-479)||(11749227-11749320)
chr7 (386-478)||(20383798-20383890)
chr7 (386-474)||(40091091-40091179)
chr7 (420-482)||(37545509-37545570)
chr7 (259-320)||(34996777-34996838)
chr7 (386-473)||(22643943-22644030)
chr7 (273-320)||(46290482-46290529)
chr7 (420-482)||(33989674-33989736)
chr7 (386-448)||(34996737-34996799)
chr7 (246-318)||(38369824-38369896)
chr7 (386-453)||(18534271-18534338)
chr7 (273-320)||(40786350-40786397)
chr7 (230-280)||(37031206-37031256)
chr7 (386-432)||(38478800-38478846)
chr7 (416-473)||(19933605-19933662)
chr7 (416-473)||(19964744-19964801)
chr7 (231-320)||(22643876-22643965)
chr7 (273-318)||(49024208-49024253)
chr7 (244-284)||(40785793-40785833)
[»] chr3 (25 HSPs)
chr3 (386-480)||(44247589-44247683)
chr3 (386-478)||(20497295-20497387)
chr3 (390-466)||(18370971-18371047)
chr3 (416-480)||(31880788-31880852)
chr3 (425-480)||(39692510-39692565)
chr3 (273-320)||(40687017-40687064)
chr3 (391-473)||(45059234-45059316)
chr3 (230-280)||(18371084-18371134)
chr3 (386-447)||(13848872-13848933)
chr3 (273-320)||(24346197-24346244)
chr3 (273-320)||(41044809-41044856)
chr3 (273-320)||(43884958-43885005)
chr3 (273-320)||(50001894-50001941)
chr3 (422-472)||(37324900-37324950)
chr3 (386-452)||(41044834-41044900)
chr3 (273-319)||(45339427-45339473)
chr3 (386-474)||(46204233-46204325)
chr3 (386-443)||(29109321-29109378)
chr3 (273-318)||(52099779-52099824)
chr3 (400-448)||(15200008-15200056)
chr3 (288-320)||(24088053-24088085)
chr3 (410-481)||(31814725-31814796)
chr3 (273-317)||(37516041-37516085)
chr3 (386-466)||(39128146-39128226)
chr3 (386-454)||(45339380-45339448)
[»] chr4 (27 HSPs)
chr4 (386-473)||(39121215-39121301)
chr4 (386-480)||(53062155-53062249)
chr4 (387-480)||(52399232-52399325)
chr4 (386-453)||(50135782-50135849)
chr4 (386-473)||(53921105-53921192)
chr4 (386-466)||(11671792-11671872)
chr4 (233-281)||(39121135-39121183)
chr4 (386-453)||(40547615-40547682)
chr4 (273-320)||(56051219-56051266)
chr4 (246-320)||(39121163-39121237)
chr4 (386-488)||(44109927-44110029)
chr4 (273-319)||(44502761-44502807)
chr4 (273-318)||(22422799-22422844)
chr4 (273-318)||(39843577-39843622)
chr4 (272-320)||(55291457-55291505)
chr4 (386-454)||(56052621-56052689)
chr4 (273-320)||(28440518-28440565)
chr4 (387-478)||(35106132-35106223)
chr4 (273-320)||(42857581-42857628)
chr4 (277-320)||(50135827-50135870)
chr4 (386-473)||(51075042-51075129)
chr4 (258-320)||(50381905-50381967)
chr4 (273-319)||(56052668-56052714)
chr4 (386-447)||(33633151-33633212)
chr4 (273-318)||(40547662-40547707)
chr4 (422-454)||(52457488-52457520)
chr4 (418-481)||(55590802-55590868)
[»] scaffold0091 (1 HSPs)
scaffold0091 (386-466)||(15459-15539)
[»] scaffold0072 (2 HSPs)
scaffold0072 (273-318)||(46573-46618)
scaffold0072 (386-466)||(46598-46678)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 385 - 508
Target Start/End: Complemental strand, 51048152 - 51048029
Alignment:
Q  385 ggtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaatac 484  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  51048152 ggtatatttgatggattgtttggtataaaataaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgagtac 51048053  T
Q  485 aaaaatgattaattctagatttga 508  Q
    ||||||||||||||||||||||||    
T  51048052 aaaaatgattaattctagatttga 51048029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 51048234 - 51048183
Alignment:
Q  230 gtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagagaa 281  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51048234 gtgtgtttggtatagaagagaaattgtaaagagagaagttggtaagagagaa 51048183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 51048176 - 51048129
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  51048176 aagagagaaatatgtgagaaatatggtatatttgatggattgtttggt 51048129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 450
Target Start/End: Complemental strand, 32454606 - 32454542
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttga 450  Q
    ||||||||| ||| ||||||| ||||||| | ||| |||||||||||||||||||||||||||||    
T  32454606 gtagatttggtgggttgtttgttataaaagagagataaaagaaatagagaagagagaagtgttga 32454542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 449
Target Start/End: Complemental strand, 29232594 - 29232531
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttg 449  Q
    |||||||||||| |||||||| ||||| | ||||||| ||||||||||||||||||| ||||||    
T  29232594 gtagatttgatgaattgtttggtataagagaaagagagaagaaatagagaagagagaggtgttg 29232531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 36184730 - 36184636
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||||| |||||||||| || | ||| |  ||| ||||||||||||||||||||| ||| ||| | |||| |||||||||| ||||||    
T  36184730 gtagatttgatgggttgtttgatacaagagaaaaatgaaaaaaatagagaagagagaagtgtcgataataacaaaaaatacaaaaatacccttga 36184636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 481
Target Start/End: Complemental strand, 8261559 - 8261503
Alignment:
Q  425 agaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaa 481  Q
    |||||||||||||||||||||||||||||| | | ||||||||| ||| ||||||||    
T  8261559 agaaatagagaagagagaagtgttgattatttttgaaagtacaagaatgtccttgaa 8261503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 19727832 - 19727879
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||||    
T  19727832 aagagagaaatatgtgagaaatatggtagattttaagtattgtttggt 19727879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 473
Target Start/End: Original strand, 38674292 - 38674343
Alignment:
Q  422 aaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||| ||||||    
T  38674292 aaaagaaatagagaagaaagaagtgttgattatttttaaaagtaccaaaata 38674343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 320
Target Start/End: Complemental strand, 52860684 - 52860594
Alignment:
Q  230 gtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||| |  ||||||||| |||  ||||||||  |||  |||||||||| | ||||||||||| ||||||||||||| |||||||||    
T  52860684 gtgtgtttggttaagaagagaagttggtaagagagagtttgagaagagagaaaaaagtgagaaatatagtagatttgatgggttgtttggt 52860594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 16660062 - 16660015
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| | ||||||||||| |||||||||||| ||||||||||    
T  16660062 aagagagaaaaaggtgagaaatatagtagatttgatgtattgtttggt 16660015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 26940415 - 26940368
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||  |||||||||||| ||||||||||    
T  26940415 aagagagaaagatgtgagaaatagagtagatttgatgtattgtttggt 26940368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 38674171 - 38674222
Alignment:
Q  229 agtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    |||||||||||| |||||||||| |||| ||||||||| | |||||||||||    
T  38674171 agtgtgtttgatgtagaagagaagttgtgaagagagaaataggtaagagaga 38674222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 45707978 - 45708037
Alignment:
Q  261 agagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||||  |||||||||||||||||||||||  |||||| |||||  |||||||||    
T  45707978 agagaagttgtgaagagagaaatatgtgagaaatagagtagatctgatgtgttgtttggt 45708037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 30196296 - 30196250
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttgg 319  Q
    |||||||||| ||||||||||||  ||| ||||||||||||||||||    
T  30196296 aagagagaaaaatgtgagaaatagagtaaatttgatggattgtttgg 30196250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 2167783 - 2167738
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||    
T  2167783 aagagagaaatatgtgagaaatagagtagatttgatgtgttgtttg 2167738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 10616287 - 10616242
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||    
T  10616287 aagagagaaatatgtgagaaataaagtagatttgatgtgttgtttg 10616242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 11240713 - 11240668
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||| |||||| |||||  |||||||    
T  11240713 aagagagaaatatgtgagaaatatagtagatatgatgtgttgtttg 11240668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 14591526 - 14591460
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattat 454  Q
    |||||||||||| |||||||||||||||| | | |  ||||||||  | ||||||||||||||||||||    
T  14591526 gtagatttgatgtattgtttgatataaaagagatatgaaagaaat--ataagagagaagtgttgattat 14591460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 466
Target Start/End: Complemental strand, 30196231 - 30196190
Alignment:
Q  425 agaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    |||||||||||||||| |||||||| |||||| |||||||||    
T  30196231 agaaatagagaagagataagtgttgtttatatttaaaagtac 30196190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 4851446 - 4851386
Alignment:
Q  258 aagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||  || ||||||||||| || |||||||||  |||||||||||| ||||||||    
T  4851446 aagagagaatatgataagagagaaaaatatgagaaatagagtagatttgatgtattgtttg 4851386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 30724648 - 30724692
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgttt 317  Q
    |||||||||| ||| ||||||||| |||||||||||| |||||||    
T  30724648 aagagagaaaaatgggagaaatatagtagatttgatgtattgttt 30724692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 385 - 508
Target Start/End: Original strand, 1775650 - 1775764
Alignment:
Q  385 ggtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaatac 484  Q
    ||||||||||||||||| |||| ||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||     
T  1775650 ggtagatttgatggatt-tttggtataaaataaagagaaaagaaatagag-------aagtgttgattatatctaaaagtacaaaaatatccttgaata- 1775740  T
Q  485 aaaaatgattaattctagatttga 508  Q
    ||||||||||||||||||||||||    
T  1775741 aaaaatgattaattctagatttga 1775764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 1775599 - 1775666
Alignment:
Q  246 agagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggatt 313  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1775599 agagaaattgtaaaaagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggatt 1775666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 42578538 - 42578451
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||| ||||| |||||||||| ||||| | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42578538 gtagctttgagggattgtttggtataagagaaagataaaagaaatagagaagagagaagttttgattatatctaaaagtacaaaaata 42578451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 386 - 482
Target Start/End: Complemental strand, 725134 - 725038
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaat 482  Q
    ||||||||||||||||||||| || || | ||||||| |||||||| | ||||||||| |||| |||||||  ||||||||||||||| ||||||||    
T  725134 gtagatttgatggattgtttggtagaagagaaagagataagaaataaataagagagaaatgtttattatattgaaaagtacaaaaatacccttgaat 725038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 389 - 473
Target Start/End: Original strand, 38587155 - 38587239
Alignment:
Q  389 gatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||||| | |||||| ||||||| |||||||  |||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  38587155 gatttgatgtagtgtttggtataaaagaaagagatgagaaattgagaagagagaagtgttgattatttttaaaagtacaaaaata 38587239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 41322020 - 41321926
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||||| |||||||||| || | ||||| ||||||||||||||||||| || | ||||||  ||| ||||||||||||||| ||||||    
T  41322020 gtagatttgatgggttgtttgatacaagagaaagataaaagaaatagagaagagaaaaattttgattgaatcaaaaagtacaaaaatacccttga 41321926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 480
Target Start/End: Original strand, 3462680 - 3462773
Alignment:
Q  387 tagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||| | |||||| ||||| | |||||||| ||||||| |||||||||||||||||||| |   |||||||||||||||| ||||||    
T  3462680 tagatttgatgtagtgtttggtataagagaaagagaagagaaataaagaagagagaagtgttgattgttaataaaagtacaaaaataaccttga 3462773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 11738624 - 11738704
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||||||||||| ||||||| | | |  | ||||||||||||||||||||||||| |||||| |||||||||    
T  11738624 gtagatttgatggattgtttggtataaaagagaaatgagagaaatagagaagagagaagtgttgtttatatttaaaagtac 11738704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 473
Target Start/End: Original strand, 13863213 - 13863297
Alignment:
Q  389 gatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||||| | |||||| ||||||| |||||||  | |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  13863213 gatttgatgtagtgtttggtataaaagaaagagatgaaaaattgagaagagagaagtgttgattatttttaaaagtacaaaaata 13863297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 28634506 - 28634586
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||  || |||||||| ||||| | | ||| | ||||||||||  |||||||||||||||||||||||||||||||    
T  28634506 gtagatttagtgtattgtttggtataagagagagatataagaaatagaagagagagaagtgttgattatatctaaaagtac 28634586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 6364671 - 6364608
Alignment:
Q  418 agagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaa 481  Q
    |||||| ||||||| |||||||||||||||||||||| | | ||||||||| ||| ||||||||    
T  6364671 agagaagagaaataaagaagagagaagtgttgattattttttaaagtacaagaatgtccttgaa 6364608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 38376513 - 38376466
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| | |||||||||| ||||||||||||||||||||||||    
T  38376513 aagagagaaagaggtgagaaatagggtagatttgatggattgtttggt 38376466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 13070514 - 13070560
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttgg 319  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    
T  13070514 aagagagaaatatgtgagaaatagagtagatttgatagattgtttgg 13070560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 6762667 - 6762711
Alignment:
Q  401 tgtttgatataaaacaaagagaaaagaaatagagaagagagaagt 445  Q
    |||||||||||||| |||||||| ||||||||| |||||||||||    
T  6762667 tgtttgatataaaagaaagagaagagaaatagaaaagagagaagt 6762711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 27337245 - 27337292
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| |||||||||||| | ||||||||||| ||||||||||    
T  27337245 aagagagaaagatgtgagaaataggatagatttgatgtattgtttggt 27337292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 33618124 - 33618171
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| | ||||||||||  |||||||||||||||||||||||    
T  33618124 aagagagaaagaggtgagaaatagagtagatttgatggattgtttggt 33618171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 37472271 - 37472313
Alignment:
Q  276 agagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    ||||||||||||||||||||  ||||||||||||| |||||||    
T  37472271 agagaaatatgtgagaaatagagtagatttgatgggttgtttg 37472313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 363037 - 362992
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||| |||||||||||||  ||||||||||| ||||||||    
T  363037 aagagagaaagatgtgagaaatataatagatttgatgtattgtttg 362992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 31570443 - 31570398
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    ||||||||| |||||||||||||| |||||||||| || |||||||    
T  31570443 aagagagaagtatgtgagaaatatagtagatttgaggggttgtttg 31570398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 20298237 - 20298273
Alignment:
Q  244 gaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  20298237 gaagagaaattgtgaagagagaagtaggtaagagaga 20298273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 386 - 488
Target Start/End: Original strand, 10365025 - 10365127
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaataca 485  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||| ||| |    
T  10365025 gtagatttgatggattgtttggtataagagaaagagaaaagaaatagagaagagagaagtgttgattatacataaaagtacaaaaatacccttggataaa 10365124  T
Q  486 aaa 488  Q
    |||    
T  10365125 aaa 10365127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 32818808 - 32818895
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||| |||||||||||| ||||| | | | ||||||||||| |||||||||||||||||||| || || |||||||||||||||    
T  32818808 gtagatttaatggattgtttggtataagagagatagaaaagaaattgagaagagagaagtgttgatgatgtcaaaaagtacaaaaata 32818895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 453
Target Start/End: Complemental strand, 17772923 - 17772857
Alignment:
Q  387 tagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||| |||||||||||| || |||| ||||| | ||||||||||||||| ||||||||||||||    
T  17772923 tagatttaatggattgtttggtagaaaagaaagatagaagaaatagagaagaaagaagtgttgatta 17772857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 10365000 - 10365047
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  10365000 aagagagaaagatgtgagaaataaagtagatttgatggattgtttggt 10365047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 17772949 - 17772902
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||    
T  17772949 aagagagaaatatgtgagaaatataatagatttaatggattgtttggt 17772902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 9244793 - 9244855
Alignment:
Q  258 aagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||| |||||||||| | |||||||||   ||||||||||||  |||||||||    
T  9244793 aagagagaagttgggaagagagaaaaaggtgagaaattgagtagatttgatgagttgtttggt 9244855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 13887213 - 13887155
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaag 444  Q
    ||||||||||||||||||||| || || | ||||| | ||||||||||||||| |||||    
T  13887213 gtagatttgatggattgtttgttagaagagaaagatagaagaaatagagaagaaagaag 13887155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 13887235 - 13887193
Alignment:
Q  276 agagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    ||||||||| ||||||||||  |||||||||||||||||||||    
T  13887235 agagaaataagtgagaaatagagtagatttgatggattgtttg 13887193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 10364947 - 10364984
Alignment:
Q  233 tgtttgatatagaagagaaattgtaaagagagaagttg 270  Q
    |||||| | |||||||||||||||||||||||||||||    
T  10364947 tgtttggtttagaagagaaattgtaaagagagaagttg 10364984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 5045498 - 5045578
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    |||||||| |||||||||||| ||||| | | |||  | |||||||||  ||| ||||||||||||||| | |||||||||    
T  5045498 gtagattttatggattgtttgttataagagagagatgagagaaatagaagagaaagaagtgttgattatttataaaagtac 5045578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 5492434 - 5492382
Alignment:
Q  228 aagtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    ||||||||||| |  | |||||||||||| ||||||||||| |||||||||||    
T  5492434 aagtgtgtttggttgataagagaaattgtgaagagagaagtaggtaagagaga 5492382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 38783709 - 38783622
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||||| |||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38783709 gtagatttgatgaattgtttggtataagagaaagacaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 38783622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 6295397 - 6295469
Alignment:
Q  401 tgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||| ||||||| ||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  6295397 tgtttggtataaaagaaagagataagaaattgagaagagagaagtgttgattatttttaaaagtacaaaaata 6295469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 37513329 - 37513235
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    |||||||||| | |||||||| |||||   | || ||| |||||||||||||||||||||||||||||| | | ||||||||||||| |||||||    
T  37513329 gtagatttgaggtattgtttggtataagtgagagggaagagaaatagagaagagagaagtgttgattatttttgaaagtacaaaaatgtccttga 37513235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 466
Target Start/End: Complemental strand, 9636258 - 9636181
Alignment:
Q  389 gatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||| |||||| ||||| | ||||| | |||||||||||||||||||||||||| |||| | |||||||||    
T  9636258 gatttgatggaatgtttggtataagagaaagatagaagaaatagagaagagagaagtgttgtttatttttaaaagtac 9636181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 43323568 - 43323643
Alignment:
Q  245 aagagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||||||||||  |||  |||||||||| ||||||||||| || ||||||||| | ||||||||||    
T  43323568 aagagaaattgtaaagagagagattgagaagagagaaagatgtgagaaatgtgatagatttgaggtattgtttggt 43323643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 451
Target Start/End: Original strand, 27756992 - 27757057
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgat 451  Q
    |||||||||||| |||||||| ||||| | |||||| | ||||||||||||||||||| |||||||    
T  27756992 gtagatttgatgaattgtttggtataagataaagaggacagaaatagagaagagagaaatgttgat 27757057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 28860443 - 28860523
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||||||||||| ||||||| | | |  | |||||||||||| ||||||||| || |||||| |||||||||    
T  28860443 gtagatttgatggattgtttggtataaaagagaaattagagaaatagagaaaagagaagtgatgtttatatttaaaagtac 28860523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 454
Target Start/End: Original strand, 31666246 - 31666314
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattat 454  Q
    |||||||||||| |||||||| ||||||| |||||  | |||||||||  |||||||||||||||||||    
T  31666246 gtagatttgatgtattgtttggtataaaagaaagatgagagaaatagaagagagagaagtgttgattat 31666314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 19439050 - 19439117
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||||||||||||||||| || || | ||| | | ||||||||||||||| ||||||||||||||    
T  19439050 gtagatttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgatta 19439117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 19575199 - 19575266
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||||||||||||||||| || || | ||| | | ||||||||||||||| ||||||||||||||    
T  19575199 gtagatttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgatta 19575266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 38783734 - 38783687
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  38783734 aagagagaaagatgtgagaaatatagtagatttgatgaattgtttggt 38783687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 2116586 - 2116541
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||    
T  2116586 aagagagaaatatgtgagaaatatagtagatttgatgtgttgtttg 2116541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 466
Target Start/End: Complemental strand, 9579322 - 9579281
Alignment:
Q  425 agaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  9579322 agaaatagagaagagagaagtgttgtttatatttaaaagtac 9579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 479
Target Start/End: Complemental strand, 25980807 - 25980714
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttg 479  Q
    |||||||| ||| |||||||| ||||| | |||||  |||||||||||||||| ||||||||| ||||| | | | ||||| |||||| |||||    
T  25980807 gtagattttatgtattgtttggtataagagaaagatgaaagaaatagagaagaaagaagtgttaattattttttatagtaccaaaatacccttg 25980714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 466
Target Start/End: Original strand, 43325566 - 43325607
Alignment:
Q  425 agaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  43325566 agaaatagagaagagagaagtgttgtttatatttaaaagtac 43325607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 472
Target Start/End: Original strand, 10405773 - 10405821
Alignment:
Q  424 aagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaat 472  Q
    ||||||||||||||||||||||||||||||| | || |||||| |||||    
T  10405773 aagaaatagagaagagagaagtgttgattatttttagaagtaccaaaat 10405821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 3955297 - 3955364
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||||||||||||||||| || || | ||| | | ||||||||||||||| | ||||||||||||    
T  3955297 gtagatttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaataagtgttgatta 3955364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 9636345 - 9636294
Alignment:
Q  229 agtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    |||||||||| |||||||||||| |||  ||||||||||| |||||||||||    
T  9636345 agtgtgtttggtatagaagagaagttgcgaagagagaagtaggtaagagaga 9636294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 453
Target Start/End: Complemental strand, 15358704 - 15358641
Alignment:
Q  390 atttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||||||||||||| || || | ||| | | ||||||||||||||| ||||||||||||||    
T  15358704 atttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgatta 15358641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 479
Target Start/End: Complemental strand, 16047315 - 16047256
Alignment:
Q  420 agaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttg 479  Q
    ||||||||| |||||||||||||| |||||||||| | | ||||||||| ||| ||||||    
T  16047315 agaaaagaagtagagaagagagaaatgttgattattttttaaagtacaagaatgtccttg 16047256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 34649688 - 34649641
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||  |||||||||||| ||||||||||    
T  34649688 aagagagaaaaatgtgagaaatagagtagatttgatgtattgtttggt 34649641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 43325511 - 43325558
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| | |||||||||| |||||||| |||||||||||||||    
T  43325511 aagagagaaaaaggtgagaaatagggtagattcgatggattgtttggt 43325558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 480
Target Start/End: Complemental strand, 30266048 - 30265958
Alignment:
Q  390 atttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    |||||||| | |||||| ||||| | |||||||| ||||||| ||||||||||||| |||||  |   |||| ||||||||||| ||||||    
T  30266048 atttgatgtagtgtttggtataagagaaagagaagagaaataaagaagagagaagtattgatcgttaataaatgtacaaaaataaccttga 30265958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 43325453 - 43325503
Alignment:
Q  230 gtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    ||||||||| | |||||||||| |||| ||||||||||| |||||||||||    
T  43325453 gtgtgtttggtttagaagagaagttgtgaagagagaagtaggtaagagaga 43325503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 3955272 - 3955317
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  3955272 aagagagaaataagtaagaaatagagtagatttgatggattgtttg 3955317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 19439025 - 19439070
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  19439025 aagagagaaataagtaagaaatagagtagatttgatggattgtttg 19439070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 19575174 - 19575219
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  19575174 aagagagaaataagtaagaaatagagtagatttgatggattgtttg 19575219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 466
Target Start/End: Complemental strand, 31289193 - 31289160
Alignment:
Q  433 agaagagagaagtgttgattatatctaaaagtac 466  Q
    |||| |||||||||||||||||||||||||||||    
T  31289193 agaaaagagaagtgttgattatatctaaaagtac 31289160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 482
Target Start/End: Complemental strand, 43638463 - 43638367
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattata-tctaaaagtacaaaaatatccttgaat 482  Q
    |||||||||||| |||||||| ||||| | ||||| || |||||||||  |||| ||  |||| |||||| |||||||  ||||||||||||||||||    
T  43638463 gtagatttgatgtattgtttggtataagagaaagaaaagagaaatagaagagagtgagatgtt-attatattctaaaaagacaaaaatatccttgaat 43638367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 2116561 - 2116481
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||  ||||||| ||||| | | |||  | |||||||||  ||||||||||||||||||| | |||||||||    
T  2116561 gtagatttgatgtgttgtttgttataagagagagatgagagaaatagaagagagagaagtgttgattatttataaaagtac 2116481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 38783785 - 38783741
Alignment:
Q  235 tttgatatagaagagaaattgtaaagagagaagttggtaagagag 279  Q
    |||||| |||||||||| |||| |||||| |||||||||||||||    
T  38783785 tttgatttagaagagaagttgtgaagagaaaagttggtaagagag 38783741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 105598 - 105692
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| || ||||||    
T  105598 gtagatttgatggattgttcggtataagacaaagagaaaagaaataaagaagagagaagtgttaactatatctaaaagtacaaaactacccttga 105692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 1570 - 1664
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||||| |||||||||| || | ||||| |||||||||||||||||||||||| || |||  ||| ||||||||||||||| ||||||    
T  1570 gtagatttgatgggttgtttgatacaagagaaagataaaagaaatagagaagagagaagttttaattgaatcaaaaagtacaaaaatacccttga 1664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 105542 - 105616
Alignment:
Q  242 tagaagagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtt 316  Q
    ||||||||||||||| ||||||||    |  ||||||||||||||||||||| || |||||||||||||||||||    
T  105542 tagaagagaaattgtgaagagagagtaagagaagagagaaatatgtgagaaacatagtagatttgatggattgtt 105616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 233503 - 233590
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||| |||||||||| ||||| | ||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  233503 gtagatttgagggattgtttggtataagagaaagataaaagaaatagagaagagagaaattttgattatatctaaaagtacaaaaata 233590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 33656745 - 33656832
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||| | | |||||| ||||| | ||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  33656745 gtagatttgaagaactgtttggtataagagaaagataaaagaaatagagaagagataagttttgattatatctaaaagtacaaaaata 33656832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 1157034 - 1156947
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||||| || ||||| ||||| | ||||||| |||||||||||||||||||||||||| |||| | ||||| ||| ||||||    
T  1157034 gtagatttgatgtatagtttggtataagagaaagagagaagaaatagagaagagagaagtgttggttatttttaaaaatactaaaata 1156947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 7441011 - 7440948
Alignment:
Q  418 agagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaa 481  Q
    |||||| ||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||    
T  7441011 agagaagagaaatagagaagagagaattgttaattatttttaaaagtacaaaaatatccttgaa 7440948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 476
Target Start/End: Original strand, 8223898 - 8223988
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatcc 476  Q
    ||||||||||||||||| ||||||||||| | | |  | ||||||||||||||||||||| ||| |||||| ||||||||| | |||||||    
T  8223898 gtagatttgatggattgcttgatataaaagagaaatgagagaaatagagaagagagaagtattgtttatatttaaaagtactataatatcc 8223988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 13760978 - 13761072
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||||||||||||| || || | |||||||| ||||||||| | ||||||| ||||||||||||  ||||||| |||| || ||||||    
T  13760978 gtagatttgatggattgtttggtacaagagaaagagaagagaaatagaaaggagagaaatgttgattatattgaaaagtataaaattacccttga 13761072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 12464282 - 12464196
Alignment:
Q  387 tagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||||  ||||||| | ||||| | |||||| ||||||||| |||||||||||||||||||| | ||||| ||| ||||||    
T  12464282 tagatttgatgtgttgtttggtttaaaagagagagaagagaaatagaaaagagagaagtgttgattatgtttaaaaatactaaaata 12464196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 481
Target Start/End: Complemental strand, 16363953 - 16363859
Alignment:
Q  387 tagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaa 481  Q
    ||||||||| |  ||||||||||||||| ||||| | || |||||||||||||| || | || |||||||| |||| |||||||||| |||||||    
T  16363953 tagatttgaggagttgtttgatataaaagaaagatagaaaaaatagagaagagaaaaattttaattatatcaaaaaatacaaaaatacccttgaa 16363859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 1157073 - 1157012
Alignment:
Q  259 agagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||||| |||||||||||| ||||||||||||  |||||||||||| || |||||||    
T  1157073 agagagaagttagtaagagagaaaaatgtgagaaatagagtagatttgatgtatagtttggt 1157012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 431 - 480
Target Start/End: Complemental strand, 26078021 - 26077972
Alignment:
Q  431 agagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    |||||| |||||||| ||||||||||||||||||||||||||| ||||||    
T  26078021 agagaaaagagaagttttgattatatctaaaagtacaaaaatacccttga 26077972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 18515717 - 18515776
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagt 445  Q
    |||||||| ||| |||||||| ||||||| |||||||| ||||||||| |||||||||||    
T  18515717 gtagatttaatgtattgtttggtataaaagaaagagaagagaaatagaaaagagagaagt 18515776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 454
Target Start/End: Original strand, 19962572 - 19962627
Alignment:
Q  399 attgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattat 454  Q
    |||||||| ||| ||| ||| || ||||||||||||||||||||||||||||||||    
T  19962572 attgtttggtatgaaaaaaataggaaagaaatagagaagagagaagtgttgattat 19962627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 3326568 - 3326614
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttgg 319  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    
T  3326568 aagagagaaatatgtgagaaatagagtagatttgatagattgtttgg 3326614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 449
Target Start/End: Original strand, 2683768 - 2683831
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttg 449  Q
    ||||||||||| ||||||| | || || | |||||||| ||||||||| |||||||||||||||    
T  2683768 gtagatttgatagattgttcggtagaagataaagagaagagaaatagaaaagagagaagtgttg 2683831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 26647820 - 26647773
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||  ||| |||||||||||||||||||    
T  26647820 aagagagaaaaatgtgagaaataaagtatatttgatggattgtttggt 26647773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 26919405 - 26919358
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||  ||| |||||||||||||||||||    
T  26919405 aagagagaaaaatgtgagaaataaagtatatttgatggattgtttggt 26919358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 28905615 - 28905568
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| | ||||||||||| |||||||||||| ||||||||||    
T  28905615 aagagagaaaaaggtgagaaatatagtagatttgatgtattgtttggt 28905568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 28942010 - 28941963
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| | ||||||||||| |||||||||||| ||||||||||    
T  28942010 aagagagaaaaaggtgagaaatatagtagatttgatgtattgtttggt 28941963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 8205901 - 8205856
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    ||||||||| |||||||||||||| |||||||||| || |||||||    
T  8205901 aagagagaagtatgtgagaaatatagtagatttgaggggttgtttg 8205856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 24905460 - 24905382
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    |||||||||||| |||||||| ||  ||| | |||||| ||| | | | |||||||||||||||||||||| |||||||||    
T  24905460 gtagatttgatgtattgtttggta--aaagagagagaagagagaaataaaagagagaagtgttgattatatataaaagtac 24905382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 473
Target Start/End: Complemental strand, 17888331 - 17888247
Alignment:
Q  389 gatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||| | ||||||| ||||| | ||||| | |||| |||||||||| |||| ||||||||||||  ||| |||| ||||||    
T  17888331 gatttgataggttgtttggtataagagaaagaaagaagagatagagaagaaagaaatgttgattatattgaaatgtaccaaaata 17888247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 386 - 482
Target Start/End: Original strand, 11202443 - 11202539
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaat 482  Q
    ||||||||||||||||||||| || || | ||||||| |||||||||||||||||||| |||| |||||||  ||||||||||||||| ||||||||    
T  11202443 gtagatttgatggattgtttggtagaagagaaagagataagaaatagagaagagagaaatgttaattatattgaaaagtacaaaaatacccttgaat 11202539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 11749227 - 11749320
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttg 479  Q
    ||||||||||||||||||||| || || | ||||||| |||||||||||||||||||| ||||||||||||  ||||||| ||||||| |||||    
T  11749227 gtagatttgatggattgtttggtagaagagaaagagataagaaatagagaagagagaaatgttgattatattgaaaagtataaaaatacccttg 11749320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 478
Target Start/End: Complemental strand, 20383890 - 20383798
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatcctt 478  Q
    ||||||||||| | ||||||| ||||| | | ||||||||||||| |||||||||||||||||||||||   |||||||||||| ||| ||||    
T  20383890 gtagatttgataggttgtttggtataagagatagagaaaagaaattgagaagagagaagtgttgattattgttaaaagtacaaatataccctt 20383798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 40091091 - 40091179
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatat 474  Q
    |||||||||| || ||||||||||  | | || || ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  40091091 gtagatttgaagggttgtttgataggagagaaggataaaagaaatagtgaagagagaagttttgattatatcaaaaagtacaaaaatat 40091179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 482
Target Start/End: Original strand, 37545509 - 37545570
Alignment:
Q  420 agaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaat 482  Q
    |||| ||||| |||||||||||||||||||||| | | |||||||||||||||||||||||||    
T  37545509 agaagagaaacagagaagagagaagtgttgattgt-tttaaaagtacaaaaatatccttgaat 37545570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 34996838 - 34996777
Alignment:
Q  259 agagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||||| |||||||||||| | ||||||||||  |||||||||||| ||||||||||    
T  34996838 agagagaagttagtaagagagaaagaagtgagaaatagagtagatttgatgtattgtttggt 34996777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 22643943 - 22644030
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||||| |||||||| || || | | | | ||||||||||||||||| ||||||||||||||| | || |||||| ||||||    
T  22643943 gtagatttgatgtattgtttggtagaagagagatataaaagaaatagagaagaaagaagtgttgattatttttagaagtaccaaaata 22644030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 46290482 - 46290529
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||    
T  46290482 aagagagaaagagatgagaaatatggtagatttgatggattgtttggt 46290529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 33989736 - 33989674
Alignment:
Q  420 agaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaat 482  Q
    |||| ||||| ||| ||||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  33989736 agaagagaaagagataagagagaaatgttgattatattgaaaagtacaaaaatacccttgaat 33989674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 34996799 - 34996737
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgtt 448  Q
    |||||||||||| |||||||| ||||| | | | |||| ||||||||||||||||||||||||    
T  34996799 gtagatttgatgtattgtttggtataagagagaaagaagagaaatagagaagagagaagtgtt 34996737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 38369896 - 38369824
Alignment:
Q  246 agagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||| |||| ||||||||  |||  ||||||||| |||||||||||||| |||||||||| || |||||||    
T  38369896 agagaagttgtgaagagagagattgagaagagagaagtatgtgagaaatatagtagatttgaggggttgtttg 38369824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 18534271 - 18534338
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    |||||||| |||||||||||| || || | ||| | | ||||||||||||||| ||||||||||||||    
T  18534271 gtagatttaatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgatta 18534338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 40786397 - 40786350
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||| |||||||||||||  |||||||||||| ||||||||||    
T  40786397 aagagagaagtatgtgagaaatagagtagatttgatgtattgtttggt 40786350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 37031206 - 37031256
Alignment:
Q  230 gtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    ||||||||| | |||||||||| |||||||||||||| | |||||||||||    
T  37031206 gtgtgtttggtgtagaagagaagttgtaaagagagaaataggtaagagaga 37031256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 38478800 - 38478846
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatag 432  Q
    |||||||| ||| |||||||| ||||||| |||||||||||||||||    
T  38478800 gtagatttaatgtattgtttggtataaaagaaagagaaaagaaatag 38478846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 473
Target Start/End: Original strand, 19933605 - 19933662
Alignment:
Q  416 aaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||| ||||||||||||| |||||| |||| ||||| | ||||||||| ||||||    
T  19933605 aaagagagaagaaatagagaaaagagaattgtttattatttttaaaagtactaaaata 19933662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 473
Target Start/End: Original strand, 19964744 - 19964801
Alignment:
Q  416 aaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||| ||||||||||||| |||||| |||| ||||| | ||||||||| ||||||    
T  19964744 aaagagagaagaaatagagaaaagagaattgtttattatttttaaaagtactaaaata 19964801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 22643876 - 22643965
Alignment:
Q  231 tgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||| | ||||| |||| |||| ||||||||| |   ||||||||||| |  |||||||||  |||||||||||| ||||||||||    
T  22643876 tgtgtttggtttagaaaagaagttgtgaagagagaaatatataagagagaaaaagatgagaaatagagtagatttgatgtattgtttggt 22643965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 49024208 - 49024253
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||| |||||||||||| ||||||||||||| ||| ||||    
T  49024208 aagagagaaaaatgtgagaaatagggtagatttgatgtattatttg 49024253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 40785793 - 40785833
Alignment:
Q  244 gaagagaaattgtaaagagagaagttggtaagagagaaata 284  Q
    |||||||||||| ||||||||||||||  ||||||||||||    
T  40785793 gaagagaaattggaaagagagaagttgtgaagagagaaata 40785833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 44247683 - 44247589
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    |||||||||| ||||||||||||| || | ||||| |||||||||||||||||||||||| ||||||  ||| ||||||||||||||| ||||||    
T  44247683 gtagatttgagggattgtttgatagaagagaaagataaaagaaatagagaagagagaagttttgattgaatcaaaaagtacaaaaatacccttga 44247589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 386 - 478
Target Start/End: Complemental strand, 20497387 - 20497295
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatcctt 478  Q
    |||||||||||||||| |||||||||||| | | |  |||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||    
T  20497387 gtagatttgatggattatttgatataaaagagaaatgaaagaaatagagaagagagaagagttgattatattgaaaagtacaaaaataccctt 20497295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 466
Target Start/End: Complemental strand, 18371047 - 18370971
Alignment:
Q  390 atttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||||||| ||||| | ||||| | |||||||||||||||||||||||||| |||| | |||||||||    
T  18371047 atttgatggattgtttggtataagagaaagatagaagaaatagagaagagagaagtgttgtttatttttaaaagtac 18370971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 416 - 480
Target Start/End: Original strand, 31880788 - 31880852
Alignment:
Q  416 aaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||| |||||||||||||||||||||||||||||| ||||| | |||||| |||||| ||||||    
T  31880788 aaagataaaagaaatagagaagagagaagtgttgataatatcaagaagtacgaaaatacccttga 31880852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 480
Target Start/End: Complemental strand, 39692565 - 39692510
Alignment:
Q  425 agaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||| |||||||    
T  39692565 agaaatagagaagagagaagtgttgattatttttgaaagtacaaaaatgtccttga 39692510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 40687064 - 40687017
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  40687064 aagagagaaatatgtgagaaatatagtagatttgatgtattgtttggt 40687017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 473
Target Start/End: Complemental strand, 45059316 - 45059234
Alignment:
Q  391 tttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||| ||| ||| ||||| | ||||| | ||||||||| ||||||||||||||||||||| |||| |||||| ||||||    
T  45059316 tttgatgggttgattggtataagagaaagatagaagaaatagggaagagagaagtgttgattatttctagaagtaccaaaata 45059234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 18371134 - 18371084
Alignment:
Q  230 gtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    ||||||||| |||||||||||| |||| ||||||||||| |||||||||||    
T  18371134 gtgtgtttggtatagaagagaagttgtgaagagagaagtaggtaagagaga 18371084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 447
Target Start/End: Original strand, 13848872 - 13848933
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgt 447  Q
    |||||||||| | |||||||| | |||||||||||||| |||||||||  ||||||||||||    
T  13848872 gtagatttgaggtattgtttggtttaaaacaaagagaagagaaatagaagagagagaagtgt 13848933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 24346244 - 24346197
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||||    
T  24346244 aagagagaaatatgtgagaaatagagtagatttgatgtgttgtttggt 24346197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 41044809 - 41044856
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||||||||||||  |||||||| || |||||||||||    
T  41044809 aagagagaaatatgtgagaaatagagtagatttaattgattgtttggt 41044856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 43884958 - 43885005
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||||    
T  43884958 aagagagaaatatgtgagaaatagagtagatttgatgtgttgtttggt 43885005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 50001941 - 50001894
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||  |||||||||||| ||||||||||    
T  50001941 aagagagaaagatgtgagaaatagagtagatttgatgtattgtttggt 50001894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 37324900 - 37324950
Alignment:
Q  422 aaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaat 472  Q
    |||| |||||||  ||||||||||||||||||| | |||||||||||||||    
T  37324900 aaaataaatagaagagagagaagtgttgattatttttaaaagtacaaaaat 37324950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 452
Target Start/End: Original strand, 41044834 - 41044900
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatt 452  Q
    |||||||| || ||||||||| || || | ||||| ||||||||||||||||| |||||| ||||||    
T  41044834 gtagatttaattgattgtttggtagaatagaaagataaaagaaatagagaagaaagaagtcttgatt 41044900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 45339473 - 45339427
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttgg 319  Q
    ||||||||| ||||||| |||||  ||||||||||||||||||||||    
T  45339473 aagagagaagtatgtgaaaaatagagtagatttgatggattgtttgg 45339427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 46204233 - 46204325
Alignment:
Q  386 gtagatttgatggattgtttg--atataaaacaaagagaaaagaaat--agagaagagagaagtgttgattatatctaaaagtacaaaaatat 474  Q
    |||||||| ||||||||||||  |||||| | |||||||||||||||  | | || |||||||||||||||||||  |||| | |||||||||    
T  46204233 gtagatttaatggattgtttgatatataataaaaagagaaaagaaataaaaaaaaaagagaagtgttgattatataaaaaatttcaaaaatat 46204325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 29109321 - 29109378
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaa 443  Q
    ||||||||||  | ||||||| ||||| | ||||||| ||||||||||||||||||||    
T  29109321 gtagatttgagtggttgtttggtataagagaaagagagaagaaatagagaagagagaa 29109378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 52099824 - 52099779
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||    
T  52099824 aagagagaaatatgtgagaaatagagtagatttgatgagttgtttg 52099779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 15200056 - 15200008
Alignment:
Q  400 ttgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgtt 448  Q
    ||||||||||| | | |||||||| ||||||||||||||||||| ||||    
T  15200056 ttgtttgatatgagataaagagaagagaaatagagaagagagaaatgtt 15200008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 24088085 - 24088053
Alignment:
Q  288 gagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||| |||||||||||||||||||||||    
T  24088085 gagaaatatagtagatttgatggattgtttggt 24088053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 481
Target Start/End: Complemental strand, 31814796 - 31814725
Alignment:
Q  410 taaaacaaagagaaaagaaatagagaagagagaagtgttgattata-tctaaaagtacaaaaatatccttgaa 481  Q
    ||||| ||||||||||||||||||  ||||||||||| |||||| | | ||||||||||| ||| ||||||||    
T  31814796 taaaataaagagaaaagaaatagaagagagagaagtg-tgattaaattttaaaagtacaagaatgtccttgaa 31814725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 37516041 - 37516085
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgttt 317  Q
    ||||||||| |||||||||||||  |||||||||||| |||||||    
T  37516041 aagagagaagtatgtgagaaatagagtagatttgatgtattgttt 37516085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 39128146 - 39128226
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    |||||||||||| |||||||| || || | | |||  | |||||||||  |||||||| |||||||||||| |||||||||    
T  39128146 gtagatttgatgtattgtttggtaaaagagagagatgagagaaatagaagagagagaaatgttgattatatataaaagtac 39128226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 45339448 - 45339380
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattat 454  Q
    |||||||||||||||||||||  || | | ||||| || ||||||||| |||| |||| ||||||||||    
T  45339448 gtagatttgatggattgtttggaatgagagaaagataagagaaatagaaaagaaagaaatgttgattat 45339380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 39121215 - 39121301
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||||||||| ||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||||    
T  39121215 gtagatttgatgggttgtttggtataagagaaagagaaaagaaatagaaaagagagaagtgttgattata-cacaaagtacaaaaata 39121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 53062155 - 53062249
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||||| |||||||||| || | ||||| |||||||||||||||||||||||| || |||  ||| ||||||||||||||| ||||||    
T  53062155 gtagatttgatgggttgtttgatacaagagaaagataaaagaaatagagaagagagaagttttaattgaatcaaaaagtacaaaaatacccttga 53062249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 480
Target Start/End: Complemental strand, 52399325 - 52399232
Alignment:
Q  387 tagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||| | |||||| ||||| | |||||||| ||||||| |||||||||||||||||||| |   |||||||||||||||| ||||||    
T  52399325 tagatttgatgtagtgtttggtataagagaaagagaagagaaataaagaagagagaagtgttgattgttaataaaagtacaaaaataaccttga 52399232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 453
Target Start/End: Complemental strand, 50135849 - 50135782
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||||||||||||||||| || |||| ||||| | ||||||||||||||| ||||||||||||||    
T  50135849 gtagatttgatggattgtttggtagaaaagaaagatagaagaaatagagaagaaagaagtgttgatta 50135782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 53921192 - 53921105
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||||||||  ||||||||| ||||| | |||||| |||||||||  ||||||||||||||||||||| ||||| ||| ||||||    
T  53921192 gtagatttgatgtgttgtttgatttaaaagagagagaagagaaatagaagagagagaagtgttgattatatttaaaaatactaaaata 53921105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 11671872 - 11671792
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    |||||||||||| |||||||| ||||||| | | |  | ||||||||||||||||||||||||| |||||| |||||||||    
T  11671872 gtagatttgatgaattgtttggtataaaagagaaatgagagaaatagagaagagagaagtgttgtttatatttaaaagtac 11671792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 39121135 - 39121183
Alignment:
Q  233 tgtttgatatagaagagaaattgtaaagagagaagttggtaagagagaa 281  Q
    |||||||| |||||||||||||||||||||||||||||  |||||||||    
T  39121135 tgtttgatttagaagagaaattgtaaagagagaagttgaaaagagagaa 39121183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 453
Target Start/End: Complemental strand, 40547682 - 40547615
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||||||||||||||||| || || | ||| | | ||||||||||||||| ||||||||||||||    
T  40547682 gtagatttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgatta 40547615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 56051219 - 56051266
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  56051219 aagagagaaagatgtgagaaatagggtagatttgatgtattgtttggt 56051266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 39121163 - 39121237
Alignment:
Q  246 agagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||| ||| ||||||||||  ||  |||||||||| ||||||||||||  ||||||||||||| |||||||||    
T  39121163 agagaagttgaaaagagagaatatgtgaagagagaaagatgtgagaaatagagtagatttgatgggttgtttggt 39121237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 488
Target Start/End: Original strand, 44109927 - 44110029
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaataca 485  Q
    ||||||||||||  ||||||||||||| | |||||  | ||| |||||  ||| |||||| |||||||| | | |||||||||||||| ||||||||| |    
T  44109927 gtagatttgatgtgttgtttgatataagataaagaagagagagatagaagagaaagaagtattgattatttttgaaagtacaaaaatacccttgaataaa 44110026  T
Q  486 aaa 488  Q
    |||    
T  44110027 aaa 44110029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 44502807 - 44502761
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttgg 319  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    
T  44502807 aagagagaaatatgtgagaaatagagtagatttgatagattgtttgg 44502761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 22422799 - 22422844
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||    
T  22422799 aagagagaaatatgtgagaaatagagtagatttgatgaattgtttg 22422844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 39843622 - 39843577
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||    
T  39843622 aagagagaaatatgtgagaaatatagtagatttgatgtgttgtttg 39843577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 55291457 - 55291505
Alignment:
Q  272 taagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||| ||||||||||| |||||||||  |||||||||||    
T  55291457 taagagagaaatatatgagaaatatgatagatttgagagattgtttggt 55291505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 56052689 - 56052621
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattat 454  Q
    ||||||||||||||| |||||  |||| | ||||| |||| |||||||||||| |||| ||||||||||    
T  56052689 gtagatttgatggatggtttggaataagagaaagataaaaaaaatagagaagaaagaaatgttgattat 56052621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 28440518 - 28440565
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||| |||||||||| | |||||||||||| |||||||||    
T  28440518 aagagagaaataggtgagaaataagatagatttgatgggttgtttggt 28440565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 35106223 - 35106132
Alignment:
Q  387 tagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatcctt 478  Q
    ||||||||||| | ||||||||| || | | | | | ||||||||||||| | ||||||||||||||| | ||||||||| |||||| ||||    
T  35106223 tagatttgatgtagtgtttgatagaagagagatatagaagaaatagagaaaaaagaagtgttgattatttttaaaagtaccaaaataccctt 35106132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 42857581 - 42857628
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||| ||||||||  |||||||||||| ||||||||||    
T  42857581 aagagagaaatatgagagaaatagagtagatttgatgtattgtttggt 42857628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 320
Target Start/End: Complemental strand, 50135870 - 50135827
Alignment:
Q  277 gagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||| ||||||||||  |||||||||||||||||||||||    
T  50135870 gagaaataggtgagaaatagagtagatttgatggattgtttggt 50135827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 51075129 - 51075042
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||||| | |||||| || |||| | |  ||| |||||||||| ||||||||||||||||||  |  |||||||||||||||    
T  51075129 gtagatttgatgtactgtttggtagaaaagagattgaagagaaatagaggagagagaagtgttgattactttcaaaagtacaaaaata 51075042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 50381905 - 50381967
Alignment:
Q  258 aagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||  |||||||||| | |||||||||   ||||||||||||| |||||||||    
T  50381905 aagagagaagttgagaagagagaaaaaggtgagaaattgagtagatttgatgggttgtttggt 50381967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 56052714 - 56052668
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttgg 319  Q
    ||||||||||||  |||||||||| ||||||||||||||| ||||||    
T  56052714 aagagagaaatagatgagaaatatagtagatttgatggatggtttgg 56052668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 447
Target Start/End: Original strand, 33633151 - 33633212
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgt 447  Q
    ||||||||||||| ||||||| ||||| | | | |||| |||||||||||||| ||||||||    
T  33633151 gtagatttgatgggttgtttggtataagagagaaagaagagaaatagagaagaaagaagtgt 33633212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 40547707 - 40547662
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  40547707 aagagagaaataagtaagaaatagagtagatttgatggattgtttg 40547662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 454
Target Start/End: Original strand, 52457488 - 52457520
Alignment:
Q  422 aaaagaaatagagaagagagaagtgttgattat 454  Q
    ||||||||||||||||| |||||||||||||||    
T  52457488 aaaagaaatagagaagaaagaagtgttgattat 52457520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 481
Target Start/End: Original strand, 55590802 - 55590868
Alignment:
Q  418 agagaaaagaaatagagaagag---agaagtgttgattatatctaaaagtacaaaaatatccttgaa 481  Q
    |||||| |||||||||||||||   ||||||||||||||| | | ||||||||| ||| ||||||||    
T  55590802 agagaagagaaatagagaagagagaagaagtgttgattattttttaaagtacaagaatgtccttgaa 55590868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 15539 - 15459
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||||||||||||||||||| | | |  | ||||| ||| ||||||||||||||| ||| || |||||||||    
T  15539 gtagatttgatggattgtttgatataaaagagaaatgagagaaaaagaaaagagagaagtgttgtttagatttaaaagtac 15459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 46573 - 46618
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||  |||||||| ||||||||||||    
T  46573 aagagagaaatatgtgagaaatagagtagattttatggattgtttg 46618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 46598 - 46678
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    |||||||| |||||||||||| ||||| | | |||  | |||||||||  ||| ||||||||||||||| | |||||||||    
T  46598 gtagattttatggattgtttgttataagagagagatgagagaaatagaagagaaagaagtgttgattatttataaaagtac 46678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University