View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140_2D_low_1 (Length: 536)
Name: NF10140_2D_low_1
Description: NF10140_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140_2D_low_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 169 - 536
Target Start/End: Complemental strand, 39819176 - 39818816
Alignment:
| Q |
169 |
gttcttaaagaaccgttactttagaaagcattcgaagttcaagcatacatataagccgaactacgtattagataaattttgtccctgctgttacaactta |
268 |
Q |
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| T |
39819176 |
gttcttaaagaaccgttactttagaaagcaatcgaagttcaagcatacatataagccgaactaagtattagataaactttgtccctgctgttacaactta |
39819077 |
T |
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| Q |
269 |
atggtttggttgtagagaaattttatgtagaattttctcccttnnnnnnnngagcaagctcccaataaatagctctgttagggttttcaaccctaatagg |
368 |
Q |
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| T |
39819076 |
atggtttggttgtaaagacattttatgtagaattttctcccttaaaaaaaagagcaagctcccaataaatagctctgctagggttttcaaccctaatagg |
39818977 |
T |
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| Q |
369 |
actcttggaagcgaatagtgtttcaaatccctatagtggtgcctccgagtattggtgtttttctagttatatatccttcctctagtgtttgtgtttccca |
468 |
Q |
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| T |
39818976 |
actcttggaagcgaatagtgtttcaaatccctatagtggtgcctccgagtattagtg-ttttctagttatatatccttcctctagtgtttgtgtttccca |
39818878 |
T |
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| Q |
469 |
aacatgtctcctttggttgtgtttttgaagatgggtactcatctaattggatcattggtcttcatatc |
536 |
Q |
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| T |
39818877 |
aacatgtctcctttggttgtgtttttgaagatg------catctaattggatcattggtcttcatatc |
39818816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 39819344 - 39819248
Alignment:
| Q |
1 |
caaaactaattttggatagaaagttttcaacggcaaaagaagggaaaacaaaccctttttaattgaagagttcttcacccacaaatattgagtttca |
97 |
Q |
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| T |
39819344 |
caaaactaattttggatagaaagttttcaacggcaaaagaagggaaaacaaaccctttttaattgaagagttcttcacccacaaatattgagtttca |
39819248 |
T |
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