View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140_2D_low_11 (Length: 301)
Name: NF10140_2D_low_11
Description: NF10140_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140_2D_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 51547534 - 51547259
Alignment:
| Q |
12 |
catcaacatcacttctattgccagtaatgacagtgagatcccttccatcaccaagtagaacaatattggttttattgcttgaaatttcaacattttcctc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51547534 |
catcaacatcacttctattgccagtaatgacagtttgatcccttccatcaccaagtagaacaatattggttttattgcttgaaatttcaacattttcctc |
51547435 |
T |
|
| Q |
112 |
atatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcattaatggtgctaaagtttcccgttccatct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51547434 |
atatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcattaatggtgctaaagtttcccgttccatct |
51547335 |
T |
|
| Q |
212 |
gcagccacaacaatcacattgtcggtgctttgcaagaacctgcggcgatctttgcttgataaccacgtgagagcat |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
51547334 |
gcagccacaacaatcacattgtcggtgctttgcaagaacctgcggtgatctttgcttgataaccacatgagagcat |
51547259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 19475426 - 19475223
Alignment:
| Q |
12 |
catcaacatcacttctattgccagtaatgacagtgagatcccttccatcaccaagtagaacaatattggttttattgcttgaaatttcaacattttcctc |
111 |
Q |
| |
|
|||||||| ||||||| || ||||| |||||||| ||| |||||||||||||| | ||||| || ||||||| |||| |||||||||||||| || |
|
|
| T |
19475426 |
catcaacaacacttctgttaccagtgatgacagtagaatcacttccatcaccaagcatcacaatgttagttttataacttggtatttcaacattttcatc |
19475327 |
T |
|
| Q |
112 |
atatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcattaatggtgctaaagtttcccgttccatct |
211 |
Q |
| |
|
||| ||||||||| ||||| || | ||||||| | | || |||||||||||||| | || || |||||||| |||||||||||||| |||||||| |
|
|
| T |
19475326 |
ataatacccttctttaacataaataactatcctaaccaaactattatttggagcaaagtttatagcatcattaatagtgctaaagtttccacttccatct |
19475227 |
T |
|
| Q |
212 |
gcag |
215 |
Q |
| |
|
|||| |
|
|
| T |
19475226 |
gcag |
19475223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University