View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140_2D_low_3 (Length: 525)

Name: NF10140_2D_low_3
Description: NF10140_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140_2D_low_3
NF10140_2D_low_3
[»] chr1 (22 HSPs)
chr1 (385-508)||(51048029-51048152)
chr1 (230-281)||(51048183-51048234)
chr1 (273-320)||(51048129-51048176)
chr1 (386-450)||(32454542-32454606)
chr1 (386-449)||(29232531-29232594)
chr1 (386-480)||(36184636-36184730)
chr1 (425-481)||(8261503-8261559)
chr1 (273-320)||(19727832-19727879)
chr1 (422-473)||(38674292-38674343)
chr1 (230-320)||(52860594-52860684)
chr1 (273-320)||(16660015-16660062)
chr1 (273-320)||(26940368-26940415)
chr1 (229-280)||(38674171-38674222)
chr1 (261-320)||(45707978-45708037)
chr1 (273-319)||(30196250-30196296)
chr1 (273-318)||(2167738-2167783)
chr1 (273-318)||(10616242-10616287)
chr1 (273-318)||(11240668-11240713)
chr1 (386-454)||(14591460-14591526)
chr1 (425-466)||(30196190-30196231)
chr1 (258-318)||(4851386-4851446)
chr1 (273-317)||(30724648-30724692)
[»] chr2 (20 HSPs)
chr2 (385-508)||(1775650-1775764)
chr2 (246-313)||(1775599-1775666)
chr2 (386-473)||(42578451-42578538)
chr2 (386-482)||(725038-725134)
chr2 (389-473)||(38587155-38587239)
chr2 (386-480)||(41321926-41322020)
chr2 (387-480)||(3462680-3462773)
chr2 (386-466)||(11738624-11738704)
chr2 (389-473)||(13863213-13863297)
chr2 (386-466)||(28634506-28634586)
chr2 (418-481)||(6364608-6364671)
chr2 (273-320)||(38376466-38376513)
chr2 (273-319)||(13070514-13070560)
chr2 (401-445)||(6762667-6762711)
chr2 (273-320)||(27337245-27337292)
chr2 (273-320)||(33618124-33618171)
chr2 (276-318)||(37472271-37472313)
chr2 (273-318)||(362992-363037)
chr2 (273-318)||(31570398-31570443)
chr2 (244-280)||(20298237-20298273)
[»] chr6 (11 HSPs)
chr6 (386-488)||(10365025-10365127)
chr6 (386-473)||(32818808-32818895)
chr6 (387-453)||(17772857-17772923)
chr6 (273-320)||(10365000-10365047)
chr6 (273-320)||(17772902-17772949)
chr6 (258-320)||(9244793-9244855)
chr6 (386-444)||(13887155-13887213)
chr6 (276-318)||(13887193-13887235)
chr6 (233-270)||(10364947-10364984)
chr6 (386-466)||(5045498-5045578)
chr6 (228-280)||(5492382-5492434)
[»] chr8 (31 HSPs)
chr8 (386-473)||(38783622-38783709)
chr8 (401-473)||(6295397-6295469)
chr8 (386-480)||(37513235-37513329)
chr8 (389-466)||(9636181-9636258)
chr8 (245-320)||(43323568-43323643)
chr8 (386-451)||(27756992-27757057)
chr8 (386-466)||(28860443-28860523)
chr8 (386-454)||(31666246-31666314)
chr8 (386-453)||(19439050-19439117)
chr8 (386-453)||(19575199-19575266)
chr8 (273-320)||(38783687-38783734)
chr8 (273-318)||(2116541-2116586)
chr8 (425-466)||(9579281-9579322)
chr8 (386-479)||(25980714-25980807)
chr8 (425-466)||(43325566-43325607)
chr8 (424-472)||(10405773-10405821)
chr8 (386-453)||(3955297-3955364)
chr8 (229-280)||(9636294-9636345)
chr8 (390-453)||(15358641-15358704)
chr8 (420-479)||(16047256-16047315)
chr8 (273-320)||(34649641-34649688)
chr8 (273-320)||(43325511-43325558)
chr8 (390-480)||(30265958-30266048)
chr8 (230-280)||(43325453-43325503)
chr8 (273-318)||(3955272-3955317)
chr8 (273-318)||(19439025-19439070)
chr8 (273-318)||(19575174-19575219)
chr8 (433-466)||(31289160-31289193)
chr8 (386-482)||(43638367-43638463)
chr8 (386-466)||(2116481-2116561)
chr8 (235-279)||(38783741-38783785)
[»] scaffold0031 (3 HSPs)
scaffold0031 (386-480)||(105598-105692)
scaffold0031 (386-480)||(1570-1664)
scaffold0031 (242-316)||(105542-105616)
[»] chr5 (21 HSPs)
chr5 (386-473)||(233503-233590)
chr5 (386-473)||(33656745-33656832)
chr5 (386-473)||(1156947-1157034)
chr5 (418-481)||(7440948-7441011)
chr5 (386-476)||(8223898-8223988)
chr5 (386-480)||(13760978-13761072)
chr5 (387-473)||(12464196-12464282)
chr5 (387-481)||(16363859-16363953)
chr5 (259-320)||(1157012-1157073)
chr5 (431-480)||(26077972-26078021)
chr5 (386-445)||(18515717-18515776)
chr5 (399-454)||(19962572-19962627)
chr5 (273-319)||(3326568-3326614)
chr5 (386-449)||(2683768-2683831)
chr5 (273-320)||(26647773-26647820)
chr5 (273-320)||(26919358-26919405)
chr5 (273-320)||(28905568-28905615)
chr5 (273-320)||(28941963-28942010)
chr5 (273-318)||(8205856-8205901)
chr5 (386-466)||(24905382-24905460)
chr5 (389-473)||(17888247-17888331)
[»] chr7 (20 HSPs)
chr7 (386-482)||(11202443-11202539)
chr7 (386-479)||(11749227-11749320)
chr7 (386-478)||(20383798-20383890)
chr7 (386-474)||(40091091-40091179)
chr7 (420-482)||(37545509-37545570)
chr7 (259-320)||(34996777-34996838)
chr7 (386-473)||(22643943-22644030)
chr7 (273-320)||(46290482-46290529)
chr7 (420-482)||(33989674-33989736)
chr7 (386-448)||(34996737-34996799)
chr7 (246-318)||(38369824-38369896)
chr7 (386-453)||(18534271-18534338)
chr7 (273-320)||(40786350-40786397)
chr7 (230-280)||(37031206-37031256)
chr7 (386-432)||(38478800-38478846)
chr7 (416-473)||(19933605-19933662)
chr7 (416-473)||(19964744-19964801)
chr7 (231-320)||(22643876-22643965)
chr7 (273-318)||(49024208-49024253)
chr7 (244-284)||(40785793-40785833)
[»] chr3 (25 HSPs)
chr3 (386-480)||(44247589-44247683)
chr3 (386-478)||(20497295-20497387)
chr3 (390-466)||(18370971-18371047)
chr3 (416-480)||(31880788-31880852)
chr3 (425-480)||(39692510-39692565)
chr3 (273-320)||(40687017-40687064)
chr3 (391-473)||(45059234-45059316)
chr3 (230-280)||(18371084-18371134)
chr3 (386-447)||(13848872-13848933)
chr3 (273-320)||(24346197-24346244)
chr3 (273-320)||(41044809-41044856)
chr3 (273-320)||(43884958-43885005)
chr3 (273-320)||(50001894-50001941)
chr3 (422-472)||(37324900-37324950)
chr3 (386-452)||(41044834-41044900)
chr3 (273-319)||(45339427-45339473)
chr3 (386-474)||(46204233-46204325)
chr3 (386-443)||(29109321-29109378)
chr3 (273-318)||(52099779-52099824)
chr3 (400-448)||(15200008-15200056)
chr3 (288-320)||(24088053-24088085)
chr3 (410-481)||(31814725-31814796)
chr3 (273-317)||(37516041-37516085)
chr3 (386-466)||(39128146-39128226)
chr3 (386-454)||(45339380-45339448)
[»] chr4 (27 HSPs)
chr4 (386-473)||(39121215-39121301)
chr4 (386-480)||(53062155-53062249)
chr4 (387-480)||(52399232-52399325)
chr4 (386-453)||(50135782-50135849)
chr4 (386-473)||(53921105-53921192)
chr4 (386-466)||(11671792-11671872)
chr4 (233-281)||(39121135-39121183)
chr4 (386-453)||(40547615-40547682)
chr4 (273-320)||(56051219-56051266)
chr4 (246-320)||(39121163-39121237)
chr4 (386-488)||(44109927-44110029)
chr4 (273-319)||(44502761-44502807)
chr4 (273-318)||(22422799-22422844)
chr4 (273-318)||(39843577-39843622)
chr4 (272-320)||(55291457-55291505)
chr4 (386-454)||(56052621-56052689)
chr4 (273-320)||(28440518-28440565)
chr4 (387-478)||(35106132-35106223)
chr4 (273-320)||(42857581-42857628)
chr4 (277-320)||(50135827-50135870)
chr4 (386-473)||(51075042-51075129)
chr4 (258-320)||(50381905-50381967)
chr4 (273-319)||(56052668-56052714)
chr4 (386-447)||(33633151-33633212)
chr4 (273-318)||(40547662-40547707)
chr4 (422-454)||(52457488-52457520)
chr4 (418-481)||(55590802-55590868)
[»] scaffold0091 (1 HSPs)
scaffold0091 (386-466)||(15459-15539)
[»] scaffold0072 (2 HSPs)
scaffold0072 (273-318)||(46573-46618)
scaffold0072 (386-466)||(46598-46678)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 385 - 508
Target Start/End: Complemental strand, 51048152 - 51048029
Alignment:
Q  385 ggtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaatac 484  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  51048152 ggtatatttgatggattgtttggtataaaataaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgagtac 51048053  T
Q  485 aaaaatgattaattctagatttga 508  Q
    ||||||||||||||||||||||||    
T  51048052 aaaaatgattaattctagatttga 51048029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 51048234 - 51048183
Alignment:
Q  230 gtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagagaa 281  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51048234 gtgtgtttggtatagaagagaaattgtaaagagagaagttggtaagagagaa 51048183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 51048176 - 51048129
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  51048176 aagagagaaatatgtgagaaatatggtatatttgatggattgtttggt 51048129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 450
Target Start/End: Complemental strand, 32454606 - 32454542
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttga 450  Q
    ||||||||| ||| ||||||| ||||||| | ||| |||||||||||||||||||||||||||||    
T  32454606 gtagatttggtgggttgtttgttataaaagagagataaaagaaatagagaagagagaagtgttga 32454542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 449
Target Start/End: Complemental strand, 29232594 - 29232531
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttg 449  Q
    |||||||||||| |||||||| ||||| | ||||||| ||||||||||||||||||| ||||||    
T  29232594 gtagatttgatgaattgtttggtataagagaaagagagaagaaatagagaagagagaggtgttg 29232531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 36184730 - 36184636
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||||| |||||||||| || | ||| |  ||| ||||||||||||||||||||| ||| ||| | |||| |||||||||| ||||||    
T  36184730 gtagatttgatgggttgtttgatacaagagaaaaatgaaaaaaatagagaagagagaagtgtcgataataacaaaaaatacaaaaatacccttga 36184636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 481
Target Start/End: Complemental strand, 8261559 - 8261503
Alignment:
Q  425 agaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaa 481  Q
    |||||||||||||||||||||||||||||| | | ||||||||| ||| ||||||||    
T  8261559 agaaatagagaagagagaagtgttgattatttttgaaagtacaagaatgtccttgaa 8261503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 19727832 - 19727879
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||||    
T  19727832 aagagagaaatatgtgagaaatatggtagattttaagtattgtttggt 19727879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 473
Target Start/End: Original strand, 38674292 - 38674343
Alignment:
Q  422 aaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||| ||||||    
T  38674292 aaaagaaatagagaagaaagaagtgttgattatttttaaaagtaccaaaata 38674343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 320
Target Start/End: Complemental strand, 52860684 - 52860594
Alignment:
Q  230 gtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||| |  ||||||||| |||  ||||||||  |||  |||||||||| | ||||||||||| ||||||||||||| |||||||||    
T  52860684 gtgtgtttggttaagaagagaagttggtaagagagagtttgagaagagagaaaaaagtgagaaatatagtagatttgatgggttgtttggt 52860594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 16660062 - 16660015
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| | ||||||||||| |||||||||||| ||||||||||    
T  16660062 aagagagaaaaaggtgagaaatatagtagatttgatgtattgtttggt 16660015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 26940415 - 26940368
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||  |||||||||||| ||||||||||    
T  26940415 aagagagaaagatgtgagaaatagagtagatttgatgtattgtttggt 26940368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 38674171 - 38674222
Alignment:
Q  229 agtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    |||||||||||| |||||||||| |||| ||||||||| | |||||||||||    
T  38674171 agtgtgtttgatgtagaagagaagttgtgaagagagaaataggtaagagaga 38674222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 45707978 - 45708037
Alignment:
Q  261 agagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||||  |||||||||||||||||||||||  |||||| |||||  |||||||||    
T  45707978 agagaagttgtgaagagagaaatatgtgagaaatagagtagatctgatgtgttgtttggt 45708037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 30196296 - 30196250
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttgg 319  Q
    |||||||||| ||||||||||||  ||| ||||||||||||||||||    
T  30196296 aagagagaaaaatgtgagaaatagagtaaatttgatggattgtttgg 30196250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 2167783 - 2167738
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||    
T  2167783 aagagagaaatatgtgagaaatagagtagatttgatgtgttgtttg 2167738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 10616287 - 10616242
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||    
T  10616287 aagagagaaatatgtgagaaataaagtagatttgatgtgttgtttg 10616242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 11240713 - 11240668
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||| |||||| |||||  |||||||    
T  11240713 aagagagaaatatgtgagaaatatagtagatatgatgtgttgtttg 11240668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 14591526 - 14591460
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattat 454  Q
    |||||||||||| |||||||||||||||| | | |  ||||||||  | ||||||||||||||||||||    
T  14591526 gtagatttgatgtattgtttgatataaaagagatatgaaagaaat--ataagagagaagtgttgattat 14591460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 466
Target Start/End: Complemental strand, 30196231 - 30196190
Alignment:
Q  425 agaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    |||||||||||||||| |||||||| |||||| |||||||||    
T  30196231 agaaatagagaagagataagtgttgtttatatttaaaagtac 30196190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 4851446 - 4851386
Alignment:
Q  258 aagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||  || ||||||||||| || |||||||||  |||||||||||| ||||||||    
T  4851446 aagagagaatatgataagagagaaaaatatgagaaatagagtagatttgatgtattgtttg 4851386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 30724648 - 30724692
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgttt 317  Q
    |||||||||| ||| ||||||||| |||||||||||| |||||||    
T  30724648 aagagagaaaaatgggagaaatatagtagatttgatgtattgttt 30724692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 385 - 508
Target Start/End: Original strand, 1775650 - 1775764
Alignment:
Q  385 ggtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaatac 484  Q
    ||||||||||||||||| |||| ||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||     
T  1775650 ggtagatttgatggatt-tttggtataaaataaagagaaaagaaatagag-------aagtgttgattatatctaaaagtacaaaaatatccttgaata- 1775740  T
Q  485 aaaaatgattaattctagatttga 508  Q
    ||||||||||||||||||||||||    
T  1775741 aaaaatgattaattctagatttga 1775764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 1775599 - 1775666
Alignment:
Q  246 agagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggatt 313  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1775599 agagaaattgtaaaaagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggatt 1775666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 42578538 - 42578451
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||| ||||| |||||||||| ||||| | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42578538 gtagctttgagggattgtttggtataagagaaagataaaagaaatagagaagagagaagttttgattatatctaaaagtacaaaaata 42578451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 386 - 482
Target Start/End: Complemental strand, 725134 - 725038
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaat 482  Q
    ||||||||||||||||||||| || || | ||||||| |||||||| | ||||||||| |||| |||||||  ||||||||||||||| ||||||||    
T  725134 gtagatttgatggattgtttggtagaagagaaagagataagaaataaataagagagaaatgtttattatattgaaaagtacaaaaatacccttgaat 725038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 389 - 473
Target Start/End: Original strand, 38587155 - 38587239
Alignment:
Q  389 gatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||||| | |||||| ||||||| |||||||  |||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  38587155 gatttgatgtagtgtttggtataaaagaaagagatgagaaattgagaagagagaagtgttgattatttttaaaagtacaaaaata 38587239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 41322020 - 41321926
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||||| |||||||||| || | ||||| ||||||||||||||||||| || | ||||||  ||| ||||||||||||||| ||||||    
T  41322020 gtagatttgatgggttgtttgatacaagagaaagataaaagaaatagagaagagaaaaattttgattgaatcaaaaagtacaaaaatacccttga 41321926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 480
Target Start/End: Original strand, 3462680 - 3462773
Alignment:
Q  387 tagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||| | |||||| ||||| | |||||||| ||||||| |||||||||||||||||||| |   |||||||||||||||| ||||||    
T  3462680 tagatttgatgtagtgtttggtataagagaaagagaagagaaataaagaagagagaagtgttgattgttaataaaagtacaaaaataaccttga 3462773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 11738624 - 11738704
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||||||||||| ||||||| | | |  | ||||||||||||||||||||||||| |||||| |||||||||    
T  11738624 gtagatttgatggattgtttggtataaaagagaaatgagagaaatagagaagagagaagtgttgtttatatttaaaagtac 11738704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 473
Target Start/End: Original strand, 13863213 - 13863297
Alignment:
Q  389 gatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||||| | |||||| ||||||| |||||||  | |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  13863213 gatttgatgtagtgtttggtataaaagaaagagatgaaaaattgagaagagagaagtgttgattatttttaaaagtacaaaaata 13863297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 28634506 - 28634586
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||  || |||||||| ||||| | | ||| | ||||||||||  |||||||||||||||||||||||||||||||    
T  28634506 gtagatttagtgtattgtttggtataagagagagatataagaaatagaagagagagaagtgttgattatatctaaaagtac 28634586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 6364671 - 6364608
Alignment:
Q  418 agagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaa 481  Q
    |||||| ||||||| |||||||||||||||||||||| | | ||||||||| ||| ||||||||    
T  6364671 agagaagagaaataaagaagagagaagtgttgattattttttaaagtacaagaatgtccttgaa 6364608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 38376513 - 38376466
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| | |||||||||| ||||||||||||||||||||||||    
T  38376513 aagagagaaagaggtgagaaatagggtagatttgatggattgtttggt 38376466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 13070514 - 13070560
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttgg 319  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    
T  13070514 aagagagaaatatgtgagaaatagagtagatttgatagattgtttgg 13070560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 6762667 - 6762711
Alignment:
Q  401 tgtttgatataaaacaaagagaaaagaaatagagaagagagaagt 445  Q
    |||||||||||||| |||||||| ||||||||| |||||||||||    
T  6762667 tgtttgatataaaagaaagagaagagaaatagaaaagagagaagt 6762711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 27337245 - 27337292
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| |||||||||||| | ||||||||||| ||||||||||    
T  27337245 aagagagaaagatgtgagaaataggatagatttgatgtattgtttggt 27337292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 33618124 - 33618171
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| | ||||||||||  |||||||||||||||||||||||    
T  33618124 aagagagaaagaggtgagaaatagagtagatttgatggattgtttggt 33618171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 37472271 - 37472313
Alignment:
Q  276 agagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    ||||||||||||||||||||  ||||||||||||| |||||||    
T  37472271 agagaaatatgtgagaaatagagtagatttgatgggttgtttg 37472313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 363037 - 362992
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||| |||||||||||||  ||||||||||| ||||||||    
T  363037 aagagagaaagatgtgagaaatataatagatttgatgtattgtttg 362992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 31570443 - 31570398
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    ||||||||| |||||||||||||| |||||||||| || |||||||    
T  31570443 aagagagaagtatgtgagaaatatagtagatttgaggggttgtttg 31570398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 20298237 - 20298273
Alignment:
Q  244 gaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  20298237 gaagagaaattgtgaagagagaagtaggtaagagaga 20298273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 386 - 488
Target Start/End: Original strand, 10365025 - 10365127
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaataca 485  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||| ||| |    
T  10365025 gtagatttgatggattgtttggtataagagaaagagaaaagaaatagagaagagagaagtgttgattatacataaaagtacaaaaatacccttggataaa 10365124  T
Q  486 aaa 488  Q
    |||    
T  10365125 aaa 10365127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 32818808 - 32818895
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||| |||||||||||| ||||| | | | ||||||||||| |||||||||||||||||||| || || |||||||||||||||    
T  32818808 gtagatttaatggattgtttggtataagagagatagaaaagaaattgagaagagagaagtgttgatgatgtcaaaaagtacaaaaata 32818895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 453
Target Start/End: Complemental strand, 17772923 - 17772857
Alignment:
Q  387 tagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||| |||||||||||| || |||| ||||| | ||||||||||||||| ||||||||||||||    
T  17772923 tagatttaatggattgtttggtagaaaagaaagatagaagaaatagagaagaaagaagtgttgatta 17772857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 10365000 - 10365047
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  10365000 aagagagaaagatgtgagaaataaagtagatttgatggattgtttggt 10365047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 17772949 - 17772902
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||    
T  17772949 aagagagaaatatgtgagaaatataatagatttaatggattgtttggt 17772902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 9244793 - 9244855
Alignment:
Q  258 aagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||| |||||||||| | |||||||||   ||||||||||||  |||||||||    
T  9244793 aagagagaagttgggaagagagaaaaaggtgagaaattgagtagatttgatgagttgtttggt 9244855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 13887213 - 13887155
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaag 444  Q
    ||||||||||||||||||||| || || | ||||| | ||||||||||||||| |||||    
T  13887213 gtagatttgatggattgtttgttagaagagaaagatagaagaaatagagaagaaagaag 13887155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 13887235 - 13887193
Alignment:
Q  276 agagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    ||||||||| ||||||||||  |||||||||||||||||||||    
T  13887235 agagaaataagtgagaaatagagtagatttgatggattgtttg 13887193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 10364947 - 10364984
Alignment:
Q  233 tgtttgatatagaagagaaattgtaaagagagaagttg 270  Q
    |||||| | |||||||||||||||||||||||||||||    
T  10364947 tgtttggtttagaagagaaattgtaaagagagaagttg 10364984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 5045498 - 5045578
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    |||||||| |||||||||||| ||||| | | |||  | |||||||||  ||| ||||||||||||||| | |||||||||    
T  5045498 gtagattttatggattgtttgttataagagagagatgagagaaatagaagagaaagaagtgttgattatttataaaagtac 5045578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 5492434 - 5492382
Alignment:
Q  228 aagtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    ||||||||||| |  | |||||||||||| ||||||||||| |||||||||||    
T  5492434 aagtgtgtttggttgataagagaaattgtgaagagagaagtaggtaagagaga 5492382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 38783709 - 38783622
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||||| |||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38783709 gtagatttgatgaattgtttggtataagagaaagacaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 38783622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 6295397 - 6295469
Alignment:
Q  401 tgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||| ||||||| ||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  6295397 tgtttggtataaaagaaagagataagaaattgagaagagagaagtgttgattatttttaaaagtacaaaaata 6295469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 37513329 - 37513235
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    |||||||||| | |||||||| |||||   | || ||| |||||||||||||||||||||||||||||| | | ||||||||||||| |||||||    
T  37513329 gtagatttgaggtattgtttggtataagtgagagggaagagaaatagagaagagagaagtgttgattatttttgaaagtacaaaaatgtccttga 37513235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 466
Target Start/End: Complemental strand, 9636258 - 9636181
Alignment:
Q  389 gatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||| |||||| ||||| | ||||| | |||||||||||||||||||||||||| |||| | |||||||||    
T  9636258 gatttgatggaatgtttggtataagagaaagatagaagaaatagagaagagagaagtgttgtttatttttaaaagtac 9636181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 43323568 - 43323643
Alignment:
Q  245 aagagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||||||||||  |||  |||||||||| ||||||||||| || ||||||||| | ||||||||||    
T  43323568 aagagaaattgtaaagagagagattgagaagagagaaagatgtgagaaatgtgatagatttgaggtattgtttggt 43323643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 451
Target Start/End: Original strand, 27756992 - 27757057
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgat 451  Q
    |||||||||||| |||||||| ||||| | |||||| | ||||||||||||||||||| |||||||    
T  27756992 gtagatttgatgaattgtttggtataagataaagaggacagaaatagagaagagagaaatgttgat 27757057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 28860443 - 28860523
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||||||||||| ||||||| | | |  | |||||||||||| ||||||||| || |||||| |||||||||    
T  28860443 gtagatttgatggattgtttggtataaaagagaaattagagaaatagagaaaagagaagtgatgtttatatttaaaagtac 28860523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 454
Target Start/End: Original strand, 31666246 - 31666314
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattat 454  Q
    |||||||||||| |||||||| ||||||| |||||  | |||||||||  |||||||||||||||||||    
T  31666246 gtagatttgatgtattgtttggtataaaagaaagatgagagaaatagaagagagagaagtgttgattat 31666314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 19439050 - 19439117
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||||||||||||||||| || || | ||| | | ||||||||||||||| ||||||||||||||    
T  19439050 gtagatttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgatta 19439117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 19575199 - 19575266
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||||||||||||||||| || || | ||| | | ||||||||||||||| ||||||||||||||    
T  19575199 gtagatttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgatta 19575266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 38783734 - 38783687
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  38783734 aagagagaaagatgtgagaaatatagtagatttgatgaattgtttggt 38783687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 2116586 - 2116541
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||    
T  2116586 aagagagaaatatgtgagaaatatagtagatttgatgtgttgtttg 2116541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 466
Target Start/End: Complemental strand, 9579322 - 9579281
Alignment:
Q  425 agaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  9579322 agaaatagagaagagagaagtgttgtttatatttaaaagtac 9579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 479
Target Start/End: Complemental strand, 25980807 - 25980714
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttg 479  Q
    |||||||| ||| |||||||| ||||| | |||||  |||||||||||||||| ||||||||| ||||| | | | ||||| |||||| |||||    
T  25980807 gtagattttatgtattgtttggtataagagaaagatgaaagaaatagagaagaaagaagtgttaattattttttatagtaccaaaatacccttg 25980714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 466
Target Start/End: Original strand, 43325566 - 43325607
Alignment:
Q  425 agaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  43325566 agaaatagagaagagagaagtgttgtttatatttaaaagtac 43325607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 472
Target Start/End: Original strand, 10405773 - 10405821
Alignment:
Q  424 aagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaat 472  Q
    ||||||||||||||||||||||||||||||| | || |||||| |||||    
T  10405773 aagaaatagagaagagagaagtgttgattatttttagaagtaccaaaat 10405821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 3955297 - 3955364
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||||||||||||||||| || || | ||| | | ||||||||||||||| | ||||||||||||    
T  3955297 gtagatttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaataagtgttgatta 3955364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 9636345 - 9636294
Alignment:
Q  229 agtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    |||||||||| |||||||||||| |||  ||||||||||| |||||||||||    
T  9636345 agtgtgtttggtatagaagagaagttgcgaagagagaagtaggtaagagaga 9636294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 453
Target Start/End: Complemental strand, 15358704 - 15358641
Alignment:
Q  390 atttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||||||||||||| || || | ||| | | ||||||||||||||| ||||||||||||||    
T  15358704 atttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgatta 15358641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 479
Target Start/End: Complemental strand, 16047315 - 16047256
Alignment:
Q  420 agaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttg 479  Q
    ||||||||| |||||||||||||| |||||||||| | | ||||||||| ||| ||||||    
T  16047315 agaaaagaagtagagaagagagaaatgttgattattttttaaagtacaagaatgtccttg 16047256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 34649688 - 34649641
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||  |||||||||||| ||||||||||    
T  34649688 aagagagaaaaatgtgagaaatagagtagatttgatgtattgtttggt 34649641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 43325511 - 43325558
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| | |||||||||| |||||||| |||||||||||||||    
T  43325511 aagagagaaaaaggtgagaaatagggtagattcgatggattgtttggt 43325558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 480
Target Start/End: Complemental strand, 30266048 - 30265958
Alignment:
Q  390 atttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    |||||||| | |||||| ||||| | |||||||| ||||||| ||||||||||||| |||||  |   |||| ||||||||||| ||||||    
T  30266048 atttgatgtagtgtttggtataagagaaagagaagagaaataaagaagagagaagtattgatcgttaataaatgtacaaaaataaccttga 30265958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 43325453 - 43325503
Alignment:
Q  230 gtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    ||||||||| | |||||||||| |||| ||||||||||| |||||||||||    
T  43325453 gtgtgtttggtttagaagagaagttgtgaagagagaagtaggtaagagaga 43325503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 3955272 - 3955317
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  3955272 aagagagaaataagtaagaaatagagtagatttgatggattgtttg 3955317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 19439025 - 19439070
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  19439025 aagagagaaataagtaagaaatagagtagatttgatggattgtttg 19439070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 19575174 - 19575219
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  19575174 aagagagaaataagtaagaaatagagtagatttgatggattgtttg 19575219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 466
Target Start/End: Complemental strand, 31289193 - 31289160
Alignment:
Q  433 agaagagagaagtgttgattatatctaaaagtac 466  Q
    |||| |||||||||||||||||||||||||||||    
T  31289193 agaaaagagaagtgttgattatatctaaaagtac 31289160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 482
Target Start/End: Complemental strand, 43638463 - 43638367
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattata-tctaaaagtacaaaaatatccttgaat 482  Q
    |||||||||||| |||||||| ||||| | ||||| || |||||||||  |||| ||  |||| |||||| |||||||  ||||||||||||||||||    
T  43638463 gtagatttgatgtattgtttggtataagagaaagaaaagagaaatagaagagagtgagatgtt-attatattctaaaaagacaaaaatatccttgaat 43638367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 2116561 - 2116481
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||  ||||||| ||||| | | |||  | |||||||||  ||||||||||||||||||| | |||||||||    
T  2116561 gtagatttgatgtgttgtttgttataagagagagatgagagaaatagaagagagagaagtgttgattatttataaaagtac 2116481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 38783785 - 38783741
Alignment:
Q  235 tttgatatagaagagaaattgtaaagagagaagttggtaagagag 279  Q
    |||||| |||||||||| |||| |||||| |||||||||||||||    
T  38783785 tttgatttagaagagaagttgtgaagagaaaagttggtaagagag 38783741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 105598 - 105692
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| || ||||||    
T  105598 gtagatttgatggattgttcggtataagacaaagagaaaagaaataaagaagagagaagtgttaactatatctaaaagtacaaaactacccttga 105692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 1570 - 1664
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||||| |||||||||| || | ||||| |||||||||||||||||||||||| || |||  ||| ||||||||||||||| ||||||    
T  1570 gtagatttgatgggttgtttgatacaagagaaagataaaagaaatagagaagagagaagttttaattgaatcaaaaagtacaaaaatacccttga 1664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 105542 - 105616
Alignment:
Q  242 tagaagagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtt 316  Q
    ||||||||||||||| ||||||||    |  ||||||||||||||||||||| || |||||||||||||||||||    
T  105542 tagaagagaaattgtgaagagagagtaagagaagagagaaatatgtgagaaacatagtagatttgatggattgtt 105616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 233503 - 233590
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||| |||||||||| ||||| | ||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  233503 gtagatttgagggattgtttggtataagagaaagataaaagaaatagagaagagagaaattttgattatatctaaaagtacaaaaata 233590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 33656745 - 33656832
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||| | | |||||| ||||| | ||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  33656745 gtagatttgaagaactgtttggtataagagaaagataaaagaaatagagaagagataagttttgattatatctaaaagtacaaaaata 33656832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 1157034 - 1156947
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||||| || ||||| ||||| | ||||||| |||||||||||||||||||||||||| |||| | ||||| ||| ||||||    
T  1157034 gtagatttgatgtatagtttggtataagagaaagagagaagaaatagagaagagagaagtgttggttatttttaaaaatactaaaata 1156947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 7441011 - 7440948
Alignment:
Q  418 agagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaa 481  Q
    |||||| ||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||    
T  7441011 agagaagagaaatagagaagagagaattgttaattatttttaaaagtacaaaaatatccttgaa 7440948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 476
Target Start/End: Original strand, 8223898 - 8223988
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatcc 476  Q
    ||||||||||||||||| ||||||||||| | | |  | ||||||||||||||||||||| ||| |||||| ||||||||| | |||||||    
T  8223898 gtagatttgatggattgcttgatataaaagagaaatgagagaaatagagaagagagaagtattgtttatatttaaaagtactataatatcc 8223988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 13760978 - 13761072
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||||||||||||| || || | |||||||| ||||||||| | ||||||| ||||||||||||  ||||||| |||| || ||||||    
T  13760978 gtagatttgatggattgtttggtacaagagaaagagaagagaaatagaaaggagagaaatgttgattatattgaaaagtataaaattacccttga 13761072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 12464282 - 12464196
Alignment:
Q  387 tagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||||  ||||||| | ||||| | |||||| ||||||||| |||||||||||||||||||| | ||||| ||| ||||||    
T  12464282 tagatttgatgtgttgtttggtttaaaagagagagaagagaaatagaaaagagagaagtgttgattatgtttaaaaatactaaaata 12464196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 481
Target Start/End: Complemental strand, 16363953 - 16363859
Alignment:
Q  387 tagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaa 481  Q
    ||||||||| |  ||||||||||||||| ||||| | || |||||||||||||| || | || |||||||| |||| |||||||||| |||||||    
T  16363953 tagatttgaggagttgtttgatataaaagaaagatagaaaaaatagagaagagaaaaattttaattatatcaaaaaatacaaaaatacccttgaa 16363859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 1157073 - 1157012
Alignment:
Q  259 agagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||||| |||||||||||| ||||||||||||  |||||||||||| || |||||||    
T  1157073 agagagaagttagtaagagagaaaaatgtgagaaatagagtagatttgatgtatagtttggt 1157012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 431 - 480
Target Start/End: Complemental strand, 26078021 - 26077972
Alignment:
Q  431 agagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    |||||| |||||||| ||||||||||||||||||||||||||| ||||||    
T  26078021 agagaaaagagaagttttgattatatctaaaagtacaaaaatacccttga 26077972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 18515717 - 18515776
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagt 445  Q
    |||||||| ||| |||||||| ||||||| |||||||| ||||||||| |||||||||||    
T  18515717 gtagatttaatgtattgtttggtataaaagaaagagaagagaaatagaaaagagagaagt 18515776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 454
Target Start/End: Original strand, 19962572 - 19962627
Alignment:
Q  399 attgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattat 454  Q
    |||||||| ||| ||| ||| || ||||||||||||||||||||||||||||||||    
T  19962572 attgtttggtatgaaaaaaataggaaagaaatagagaagagagaagtgttgattat 19962627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 3326568 - 3326614
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttgg 319  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    
T  3326568 aagagagaaatatgtgagaaatagagtagatttgatagattgtttgg 3326614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 449
Target Start/End: Original strand, 2683768 - 2683831
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttg 449  Q
    ||||||||||| ||||||| | || || | |||||||| ||||||||| |||||||||||||||    
T  2683768 gtagatttgatagattgttcggtagaagataaagagaagagaaatagaaaagagagaagtgttg 2683831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 26647820 - 26647773
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||  ||| |||||||||||||||||||    
T  26647820 aagagagaaaaatgtgagaaataaagtatatttgatggattgtttggt 26647773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 26919405 - 26919358
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||  ||| |||||||||||||||||||    
T  26919405 aagagagaaaaatgtgagaaataaagtatatttgatggattgtttggt 26919358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 28905615 - 28905568
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| | ||||||||||| |||||||||||| ||||||||||    
T  28905615 aagagagaaaaaggtgagaaatatagtagatttgatgtattgtttggt 28905568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 28942010 - 28941963
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| | ||||||||||| |||||||||||| ||||||||||    
T  28942010 aagagagaaaaaggtgagaaatatagtagatttgatgtattgtttggt 28941963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 8205901 - 8205856
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    ||||||||| |||||||||||||| |||||||||| || |||||||    
T  8205901 aagagagaagtatgtgagaaatatagtagatttgaggggttgtttg 8205856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 24905460 - 24905382
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    |||||||||||| |||||||| ||  ||| | |||||| ||| | | | |||||||||||||||||||||| |||||||||    
T  24905460 gtagatttgatgtattgtttggta--aaagagagagaagagagaaataaaagagagaagtgttgattatatataaaagtac 24905382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 473
Target Start/End: Complemental strand, 17888331 - 17888247
Alignment:
Q  389 gatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||| | ||||||| ||||| | ||||| | |||| |||||||||| |||| ||||||||||||  ||| |||| ||||||    
T  17888331 gatttgataggttgtttggtataagagaaagaaagaagagatagagaagaaagaaatgttgattatattgaaatgtaccaaaata 17888247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 386 - 482
Target Start/End: Original strand, 11202443 - 11202539
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaat 482  Q
    ||||||||||||||||||||| || || | ||||||| |||||||||||||||||||| |||| |||||||  ||||||||||||||| ||||||||    
T  11202443 gtagatttgatggattgtttggtagaagagaaagagataagaaatagagaagagagaaatgttaattatattgaaaagtacaaaaatacccttgaat 11202539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 11749227 - 11749320
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttg 479  Q
    ||||||||||||||||||||| || || | ||||||| |||||||||||||||||||| ||||||||||||  ||||||| ||||||| |||||    
T  11749227 gtagatttgatggattgtttggtagaagagaaagagataagaaatagagaagagagaaatgttgattatattgaaaagtataaaaatacccttg 11749320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 478
Target Start/End: Complemental strand, 20383890 - 20383798
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatcctt 478  Q
    ||||||||||| | ||||||| ||||| | | ||||||||||||| |||||||||||||||||||||||   |||||||||||| ||| ||||    
T  20383890 gtagatttgataggttgtttggtataagagatagagaaaagaaattgagaagagagaagtgttgattattgttaaaagtacaaatataccctt 20383798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 40091091 - 40091179
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatat 474  Q
    |||||||||| || ||||||||||  | | || || ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  40091091 gtagatttgaagggttgtttgataggagagaaggataaaagaaatagtgaagagagaagttttgattatatcaaaaagtacaaaaatat 40091179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 482
Target Start/End: Original strand, 37545509 - 37545570
Alignment:
Q  420 agaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaat 482  Q
    |||| ||||| |||||||||||||||||||||| | | |||||||||||||||||||||||||    
T  37545509 agaagagaaacagagaagagagaagtgttgattgt-tttaaaagtacaaaaatatccttgaat 37545570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 34996838 - 34996777
Alignment:
Q  259 agagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||||| |||||||||||| | ||||||||||  |||||||||||| ||||||||||    
T  34996838 agagagaagttagtaagagagaaagaagtgagaaatagagtagatttgatgtattgtttggt 34996777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 22643943 - 22644030
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||||| |||||||| || || | | | | ||||||||||||||||| ||||||||||||||| | || |||||| ||||||    
T  22643943 gtagatttgatgtattgtttggtagaagagagatataaaagaaatagagaagaaagaagtgttgattatttttagaagtaccaaaata 22644030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 46290482 - 46290529
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||    
T  46290482 aagagagaaagagatgagaaatatggtagatttgatggattgtttggt 46290529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 33989736 - 33989674
Alignment:
Q  420 agaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaat 482  Q
    |||| ||||| ||| ||||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  33989736 agaagagaaagagataagagagaaatgttgattatattgaaaagtacaaaaatacccttgaat 33989674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 34996799 - 34996737
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgtt 448  Q
    |||||||||||| |||||||| ||||| | | | |||| ||||||||||||||||||||||||    
T  34996799 gtagatttgatgtattgtttggtataagagagaaagaagagaaatagagaagagagaagtgtt 34996737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 38369896 - 38369824
Alignment:
Q  246 agagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||| |||| ||||||||  |||  ||||||||| |||||||||||||| |||||||||| || |||||||    
T  38369896 agagaagttgtgaagagagagattgagaagagagaagtatgtgagaaatatagtagatttgaggggttgtttg 38369824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 18534271 - 18534338
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    |||||||| |||||||||||| || || | ||| | | ||||||||||||||| ||||||||||||||    
T  18534271 gtagatttaatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgatta 18534338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 40786397 - 40786350
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||| |||||||||||||  |||||||||||| ||||||||||    
T  40786397 aagagagaagtatgtgagaaatagagtagatttgatgtattgtttggt 40786350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 37031206 - 37031256
Alignment:
Q  230 gtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    ||||||||| | |||||||||| |||||||||||||| | |||||||||||    
T  37031206 gtgtgtttggtgtagaagagaagttgtaaagagagaaataggtaagagaga 37031256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 38478800 - 38478846
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatag 432  Q
    |||||||| ||| |||||||| ||||||| |||||||||||||||||    
T  38478800 gtagatttaatgtattgtttggtataaaagaaagagaaaagaaatag 38478846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 473
Target Start/End: Original strand, 19933605 - 19933662
Alignment:
Q  416 aaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||| ||||||||||||| |||||| |||| ||||| | ||||||||| ||||||    
T  19933605 aaagagagaagaaatagagaaaagagaattgtttattatttttaaaagtactaaaata 19933662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 473
Target Start/End: Original strand, 19964744 - 19964801
Alignment:
Q  416 aaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||| ||||||||||||| |||||| |||| ||||| | ||||||||| ||||||    
T  19964744 aaagagagaagaaatagagaaaagagaattgtttattatttttaaaagtactaaaata 19964801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 22643876 - 22643965
Alignment:
Q  231 tgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||| | ||||| |||| |||| ||||||||| |   ||||||||||| |  |||||||||  |||||||||||| ||||||||||    
T  22643876 tgtgtttggtttagaaaagaagttgtgaagagagaaatatataagagagaaaaagatgagaaatagagtagatttgatgtattgtttggt 22643965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 49024208 - 49024253
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||| |||||||||||| ||||||||||||| ||| ||||    
T  49024208 aagagagaaaaatgtgagaaatagggtagatttgatgtattatttg 49024253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 40785793 - 40785833
Alignment:
Q  244 gaagagaaattgtaaagagagaagttggtaagagagaaata 284  Q
    |||||||||||| ||||||||||||||  ||||||||||||    
T  40785793 gaagagaaattggaaagagagaagttgtgaagagagaaata 40785833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 44247683 - 44247589
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    |||||||||| ||||||||||||| || | ||||| |||||||||||||||||||||||| ||||||  ||| ||||||||||||||| ||||||    
T  44247683 gtagatttgagggattgtttgatagaagagaaagataaaagaaatagagaagagagaagttttgattgaatcaaaaagtacaaaaatacccttga 44247589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 386 - 478
Target Start/End: Complemental strand, 20497387 - 20497295
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatcctt 478  Q
    |||||||||||||||| |||||||||||| | | |  |||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||    
T  20497387 gtagatttgatggattatttgatataaaagagaaatgaaagaaatagagaagagagaagagttgattatattgaaaagtacaaaaataccctt 20497295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 466
Target Start/End: Complemental strand, 18371047 - 18370971
Alignment:
Q  390 atttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||||||| ||||| | ||||| | |||||||||||||||||||||||||| |||| | |||||||||    
T  18371047 atttgatggattgtttggtataagagaaagatagaagaaatagagaagagagaagtgttgtttatttttaaaagtac 18370971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 416 - 480
Target Start/End: Original strand, 31880788 - 31880852
Alignment:
Q  416 aaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||| |||||||||||||||||||||||||||||| ||||| | |||||| |||||| ||||||    
T  31880788 aaagataaaagaaatagagaagagagaagtgttgataatatcaagaagtacgaaaatacccttga 31880852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 480
Target Start/End: Complemental strand, 39692565 - 39692510
Alignment:
Q  425 agaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||| |||||||    
T  39692565 agaaatagagaagagagaagtgttgattatttttgaaagtacaaaaatgtccttga 39692510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 40687064 - 40687017
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  40687064 aagagagaaatatgtgagaaatatagtagatttgatgtattgtttggt 40687017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 473
Target Start/End: Complemental strand, 45059316 - 45059234
Alignment:
Q  391 tttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||| ||| ||| ||||| | ||||| | ||||||||| ||||||||||||||||||||| |||| |||||| ||||||    
T  45059316 tttgatgggttgattggtataagagaaagatagaagaaatagggaagagagaagtgttgattatttctagaagtaccaaaata 45059234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 18371134 - 18371084
Alignment:
Q  230 gtgtgtttgatatagaagagaaattgtaaagagagaagttggtaagagaga 280  Q
    ||||||||| |||||||||||| |||| ||||||||||| |||||||||||    
T  18371134 gtgtgtttggtatagaagagaagttgtgaagagagaagtaggtaagagaga 18371084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 447
Target Start/End: Original strand, 13848872 - 13848933
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgt 447  Q
    |||||||||| | |||||||| | |||||||||||||| |||||||||  ||||||||||||    
T  13848872 gtagatttgaggtattgtttggtttaaaacaaagagaagagaaatagaagagagagaagtgt 13848933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 24346244 - 24346197
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||||    
T  24346244 aagagagaaatatgtgagaaatagagtagatttgatgtgttgtttggt 24346197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 41044809 - 41044856
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||||||||||||  |||||||| || |||||||||||    
T  41044809 aagagagaaatatgtgagaaatagagtagatttaattgattgtttggt 41044856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 43884958 - 43885005
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||||    
T  43884958 aagagagaaatatgtgagaaatagagtagatttgatgtgttgtttggt 43885005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 50001941 - 50001894
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| ||||||||||||  |||||||||||| ||||||||||    
T  50001941 aagagagaaagatgtgagaaatagagtagatttgatgtattgtttggt 50001894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 37324900 - 37324950
Alignment:
Q  422 aaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaat 472  Q
    |||| |||||||  ||||||||||||||||||| | |||||||||||||||    
T  37324900 aaaataaatagaagagagagaagtgttgattatttttaaaagtacaaaaat 37324950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 452
Target Start/End: Original strand, 41044834 - 41044900
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatt 452  Q
    |||||||| || ||||||||| || || | ||||| ||||||||||||||||| |||||| ||||||    
T  41044834 gtagatttaattgattgtttggtagaatagaaagataaaagaaatagagaagaaagaagtcttgatt 41044900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 45339473 - 45339427
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttgg 319  Q
    ||||||||| ||||||| |||||  ||||||||||||||||||||||    
T  45339473 aagagagaagtatgtgaaaaatagagtagatttgatggattgtttgg 45339427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 46204233 - 46204325
Alignment:
Q  386 gtagatttgatggattgtttg--atataaaacaaagagaaaagaaat--agagaagagagaagtgttgattatatctaaaagtacaaaaatat 474  Q
    |||||||| ||||||||||||  |||||| | |||||||||||||||  | | || |||||||||||||||||||  |||| | |||||||||    
T  46204233 gtagatttaatggattgtttgatatataataaaaagagaaaagaaataaaaaaaaaagagaagtgttgattatataaaaaatttcaaaaatat 46204325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 29109321 - 29109378
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaa 443  Q
    ||||||||||  | ||||||| ||||| | ||||||| ||||||||||||||||||||    
T  29109321 gtagatttgagtggttgtttggtataagagaaagagagaagaaatagagaagagagaa 29109378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 52099824 - 52099779
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||    
T  52099824 aagagagaaatatgtgagaaatagagtagatttgatgagttgtttg 52099779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 15200056 - 15200008
Alignment:
Q  400 ttgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgtt 448  Q
    ||||||||||| | | |||||||| ||||||||||||||||||| ||||    
T  15200056 ttgtttgatatgagataaagagaagagaaatagagaagagagaaatgtt 15200008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 24088085 - 24088053
Alignment:
Q  288 gagaaatatggtagatttgatggattgtttggt 320  Q
    ||||||||| |||||||||||||||||||||||    
T  24088085 gagaaatatagtagatttgatggattgtttggt 24088053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 481
Target Start/End: Complemental strand, 31814796 - 31814725
Alignment:
Q  410 taaaacaaagagaaaagaaatagagaagagagaagtgttgattata-tctaaaagtacaaaaatatccttgaa 481  Q
    ||||| ||||||||||||||||||  ||||||||||| |||||| | | ||||||||||| ||| ||||||||    
T  31814796 taaaataaagagaaaagaaatagaagagagagaagtg-tgattaaattttaaaagtacaagaatgtccttgaa 31814725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 37516041 - 37516085
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgttt 317  Q
    ||||||||| |||||||||||||  |||||||||||| |||||||    
T  37516041 aagagagaagtatgtgagaaatagagtagatttgatgtattgttt 37516085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 39128146 - 39128226
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    |||||||||||| |||||||| || || | | |||  | |||||||||  |||||||| |||||||||||| |||||||||    
T  39128146 gtagatttgatgtattgtttggtaaaagagagagatgagagaaatagaagagagagaaatgttgattatatataaaagtac 39128226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 45339448 - 45339380
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattat 454  Q
    |||||||||||||||||||||  || | | ||||| || ||||||||| |||| |||| ||||||||||    
T  45339448 gtagatttgatggattgtttggaatgagagaaagataagagaaatagaaaagaaagaaatgttgattat 45339380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 39121215 - 39121301
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||||||||| ||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||||    
T  39121215 gtagatttgatgggttgtttggtataagagaaagagaaaagaaatagaaaagagagaagtgttgattata-cacaaagtacaaaaata 39121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 53062155 - 53062249
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||||| |||||||||| || | ||||| |||||||||||||||||||||||| || |||  ||| ||||||||||||||| ||||||    
T  53062155 gtagatttgatgggttgtttgatacaagagaaagataaaagaaatagagaagagagaagttttaattgaatcaaaaagtacaaaaatacccttga 53062249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 480
Target Start/End: Complemental strand, 52399325 - 52399232
Alignment:
Q  387 tagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 480  Q
    ||||||||||| | |||||| ||||| | |||||||| ||||||| |||||||||||||||||||| |   |||||||||||||||| ||||||    
T  52399325 tagatttgatgtagtgtttggtataagagaaagagaagagaaataaagaagagagaagtgttgattgttaataaaagtacaaaaataaccttga 52399232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 453
Target Start/End: Complemental strand, 50135849 - 50135782
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||||||||||||||||| || |||| ||||| | ||||||||||||||| ||||||||||||||    
T  50135849 gtagatttgatggattgtttggtagaaaagaaagatagaagaaatagagaagaaagaagtgttgatta 50135782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 53921192 - 53921105
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    ||||||||||||  ||||||||| ||||| | |||||| |||||||||  ||||||||||||||||||||| ||||| ||| ||||||    
T  53921192 gtagatttgatgtgttgtttgatttaaaagagagagaagagaaatagaagagagagaagtgttgattatatttaaaaatactaaaata 53921105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 11671872 - 11671792
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    |||||||||||| |||||||| ||||||| | | |  | ||||||||||||||||||||||||| |||||| |||||||||    
T  11671872 gtagatttgatgaattgtttggtataaaagagaaatgagagaaatagagaagagagaagtgttgtttatatttaaaagtac 11671792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 39121135 - 39121183
Alignment:
Q  233 tgtttgatatagaagagaaattgtaaagagagaagttggtaagagagaa 281  Q
    |||||||| |||||||||||||||||||||||||||||  |||||||||    
T  39121135 tgtttgatttagaagagaaattgtaaagagagaagttgaaaagagagaa 39121183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 453
Target Start/End: Complemental strand, 40547682 - 40547615
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgatta 453  Q
    ||||||||||||||||||||| || || | ||| | | ||||||||||||||| ||||||||||||||    
T  40547682 gtagatttgatggattgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgatta 40547615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 56051219 - 56051266
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  56051219 aagagagaaagatgtgagaaatagggtagatttgatgtattgtttggt 56051266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 39121163 - 39121237
Alignment:
Q  246 agagaaattgtaaagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||| ||| ||||||||||  ||  |||||||||| ||||||||||||  ||||||||||||| |||||||||    
T  39121163 agagaagttgaaaagagagaatatgtgaagagagaaagatgtgagaaatagagtagatttgatgggttgtttggt 39121237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 488
Target Start/End: Original strand, 44109927 - 44110029
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaataca 485  Q
    ||||||||||||  ||||||||||||| | |||||  | ||| |||||  ||| |||||| |||||||| | | |||||||||||||| ||||||||| |    
T  44109927 gtagatttgatgtgttgtttgatataagataaagaagagagagatagaagagaaagaagtattgattatttttgaaagtacaaaaatacccttgaataaa 44110026  T
Q  486 aaa 488  Q
    |||    
T  44110027 aaa 44110029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 44502807 - 44502761
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttgg 319  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    
T  44502807 aagagagaaatatgtgagaaatagagtagatttgatagattgtttgg 44502761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 22422799 - 22422844
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||    
T  22422799 aagagagaaatatgtgagaaatagagtagatttgatgaattgtttg 22422844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 39843622 - 39843577
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||    
T  39843622 aagagagaaatatgtgagaaatatagtagatttgatgtgttgtttg 39843577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 55291457 - 55291505
Alignment:
Q  272 taagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||| ||||||||||| |||||||||  |||||||||||    
T  55291457 taagagagaaatatatgagaaatatgatagatttgagagattgtttggt 55291505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 56052689 - 56052621
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattat 454  Q
    ||||||||||||||| |||||  |||| | ||||| |||| |||||||||||| |||| ||||||||||    
T  56052689 gtagatttgatggatggtttggaataagagaaagataaaaaaaatagagaagaaagaaatgttgattat 56052621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 28440518 - 28440565
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||| |||||||||| | |||||||||||| |||||||||    
T  28440518 aagagagaaataggtgagaaataagatagatttgatgggttgtttggt 28440565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 35106223 - 35106132
Alignment:
Q  387 tagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatcctt 478  Q
    ||||||||||| | ||||||||| || | | | | | ||||||||||||| | ||||||||||||||| | ||||||||| |||||| ||||    
T  35106223 tagatttgatgtagtgtttgatagaagagagatatagaagaaatagagaaaaaagaagtgttgattatttttaaaagtaccaaaataccctt 35106132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 42857581 - 42857628
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||| ||||||||  |||||||||||| ||||||||||    
T  42857581 aagagagaaatatgagagaaatagagtagatttgatgtattgtttggt 42857628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 320
Target Start/End: Complemental strand, 50135870 - 50135827
Alignment:
Q  277 gagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||| ||||||||||  |||||||||||||||||||||||    
T  50135870 gagaaataggtgagaaatagagtagatttgatggattgtttggt 50135827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 51075129 - 51075042
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 473  Q
    |||||||||||| | |||||| || |||| | |  ||| |||||||||| ||||||||||||||||||  |  |||||||||||||||    
T  51075129 gtagatttgatgtactgtttggtagaaaagagattgaagagaaatagaggagagagaagtgttgattactttcaaaagtacaaaaata 51075042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 50381905 - 50381967
Alignment:
Q  258 aagagagaagttggtaagagagaaatatgtgagaaatatggtagatttgatggattgtttggt 320  Q
    |||||||||||||  |||||||||| | |||||||||   ||||||||||||| |||||||||    
T  50381905 aagagagaagttgagaagagagaaaaaggtgagaaattgagtagatttgatgggttgtttggt 50381967  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 56052714 - 56052668
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttgg 319  Q
    ||||||||||||  |||||||||| ||||||||||||||| ||||||    
T  56052714 aagagagaaatagatgagaaatatagtagatttgatggatggtttgg 56052668  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 447
Target Start/End: Original strand, 33633151 - 33633212
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgt 447  Q
    ||||||||||||| ||||||| ||||| | | | |||| |||||||||||||| ||||||||    
T  33633151 gtagatttgatgggttgtttggtataagagagaaagaagagaaatagagaagaaagaagtgt 33633212  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 40547707 - 40547662
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  40547707 aagagagaaataagtaagaaatagagtagatttgatggattgtttg 40547662  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 454
Target Start/End: Original strand, 52457488 - 52457520
Alignment:
Q  422 aaaagaaatagagaagagagaagtgttgattat 454  Q
    ||||||||||||||||| |||||||||||||||    
T  52457488 aaaagaaatagagaagaaagaagtgttgattat 52457520  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 481
Target Start/End: Original strand, 55590802 - 55590868
Alignment:
Q  418 agagaaaagaaatagagaagag---agaagtgttgattatatctaaaagtacaaaaatatccttgaa 481  Q
    |||||| |||||||||||||||   ||||||||||||||| | | ||||||||| ||| ||||||||    
T  55590802 agagaagagaaatagagaagagagaagaagtgttgattattttttaaagtacaagaatgtccttgaa 55590868  T

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Target: scaffold0091 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 15539 - 15459
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    ||||||||||||||||||||||||||||| | | |  | ||||| ||| ||||||||||||||| ||| || |||||||||    
T  15539 gtagatttgatggattgtttgatataaaagagaaatgagagaaaaagaaaagagagaagtgttgtttagatttaaaagtac 15459  T

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Target: scaffold0072 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 46573 - 46618
Alignment:
Q  273 aagagagaaatatgtgagaaatatggtagatttgatggattgtttg 318  Q
    |||||||||||||||||||||||  |||||||| ||||||||||||    
T  46573 aagagagaaatatgtgagaaatagagtagattttatggattgtttg 46618  T

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Target: scaffold0072; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 46598 - 46678
Alignment:
Q  386 gtagatttgatggattgtttgatataaaacaaagagaaaagaaatagagaagagagaagtgttgattatatctaaaagtac 466  Q
    |||||||| |||||||||||| ||||| | | |||  | |||||||||  ||| ||||||||||||||| | |||||||||    
T  46598 gtagattttatggattgtttgttataagagagagatgagagaaatagaagagaaagaagtgttgattatttataaaagtac 46678  T

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