View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140_2D_low_9 (Length: 333)
Name: NF10140_2D_low_9
Description: NF10140_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140_2D_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 5 - 315
Target Start/End: Original strand, 5446693 - 5447003
Alignment:
| Q |
5 |
tgagaagaatgatgagggatgccgagcggtataaggcagaggatgaggaggttaggaagaaggtgaaagcgaagaacttgtttgagaattatgtttatga |
104 |
Q |
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| T |
5446693 |
tgagaagaatgatgagggatgccgagcggtataaggcagaggatgaggaggttaggaagaaggtgaaagcaaagaacttgtttgagaattatgtttatga |
5446792 |
T |
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| Q |
105 |
aacgagggagagagtgaagaaacttgagaaggtagtggaggaaagtatagaatggtttgacagaaaccaattggcagaaattgatgagtttgaattcaag |
204 |
Q |
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| T |
5446793 |
aatgagggagagagtgaagaaacttgagaaggtagtggaggaaagtatagaatggtttgaaagaaaccaattggcagaaattgatgagtttgaattcaag |
5446892 |
T |
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| Q |
205 |
aagcaggagttggaaaatagtatgaagtttctctaattgtgatgctaggtaaaagatttaagaacaagtttcttgagtgtgaagcaatgtaaaattgttt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446893 |
aagcaggagttggaaaatagtatgaagtttctctaattgtgatgctaggtaaaagatttaagaacaagtttcttgagtgtgaagcaatgtaaaattgttt |
5446992 |
T |
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| Q |
305 |
gagctttgtta |
315 |
Q |
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|| |||||||| |
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| T |
5446993 |
gaactttgtta |
5447003 |
T |
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