View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140_high_1 (Length: 328)
Name: NF10140_high_1
Description: NF10140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 44471478 - 44471788
Alignment:
| Q |
16 |
catatagaagcagcgtaatacgtattagggctagctaggtaggctcaaataaggttgctt-ctaattactgtttgtttttaccagctaataactgtttta |
114 |
Q |
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| T |
44471478 |
catatagaagcagtgtaatacgtattagggctagctaggtaggctcgaataaggttcctttctaattactgtttgtttttaccagctaataactgtttta |
44471577 |
T |
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| Q |
115 |
atacggaagaaaaactaagaaataaacaaatctctttaaaaaaga---tgaataatcaagttacannnnnnnatgagatttacattagtctcttacactg |
211 |
Q |
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| T |
44471578 |
atacggaagaaaaactaagaaataaacaaatttctttaaaaaatatattgaatgatcaagttacatttttttatgagatttacattagtctcttacactg |
44471677 |
T |
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| Q |
212 |
tccac-nnnnnnnnnncttagtctattacactacatatatatagagactaattttagttaattgcatagaactataatattttaatataacaaattctag |
310 |
Q |
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| T |
44471678 |
tccacaaaaaaaaaaacttagtctcttacactac----atatagagactaattttagttaattgcatagaactataatattttaatataacaaattctag |
44471773 |
T |
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| Q |
311 |
tatctctgcttctcc |
325 |
Q |
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| T |
44471774 |
tatctcttcttctcc |
44471788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 44476107 - 44476199
Alignment:
| Q |
16 |
catatagaagcagcgtaatacgtattagggctagctaggtaggctcaaataaggttgcttctaattactgtttgtttttaccagctaataact |
108 |
Q |
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| T |
44476107 |
catatagaaaccgcataatacgtattagggctagctaggttggctcaaataagatagcttttaattgctgtttgtttttaccagctaataact |
44476199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 44476305 - 44476363
Alignment:
| Q |
257 |
actaattttagttaattgcatagaactataata-ttttaatataacaaattctagtatc |
314 |
Q |
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| T |
44476305 |
actaattttagttaattgcatagaactagaatatttttaatataacaaattttagtatc |
44476363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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