View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140_high_5 (Length: 233)

Name: NF10140_high_5
Description: NF10140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140_high_5
NF10140_high_5
[»] chr4 (1 HSPs)
chr4 (32-103)||(11122301-11122373)
[»] chr8 (4 HSPs)
chr8 (159-197)||(25874441-25874479)
chr8 (160-216)||(13639410-13639468)
chr8 (160-216)||(13739823-13739881)
chr8 (154-196)||(33462664-33462706)
[»] chr6 (1 HSPs)
chr6 (165-217)||(30732381-30732431)
[»] chr7 (1 HSPs)
chr7 (169-216)||(31627380-31627426)
[»] chr5 (1 HSPs)
chr5 (160-195)||(42069781-42069816)
[»] chr2 (3 HSPs)
chr2 (158-193)||(11182243-11182278)
chr2 (158-192)||(34644651-34644685)
chr2 (113-205)||(14803065-14803158)
[»] chr1 (4 HSPs)
chr1 (160-199)||(5950919-5950958)
chr1 (114-193)||(35790359-35790435)
chr1 (160-195)||(46742304-46742339)
chr1 (165-217)||(48781406-48781458)
[»] chr3 (2 HSPs)
chr3 (165-193)||(653272-653300)
chr3 (158-194)||(29384250-29384286)


Alignment Details
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 11122373 - 11122301
Alignment:
Q  32 aagttcaaagggtcttgctcagagcataatattgttt-actgccaaaaacaacctcttgtcactgttttaaat 103  Q
    ||||||||||||||||||||| || | |||||||||| ||| || ||||||||||||||||||| ||||||||    
T  11122373 aagttcaaagggtcttgctcataggagaatattgttttactacctaaaacaacctcttgtcactattttaaat 11122301  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 25874479 - 25874441
Alignment:
Q  159 tatcatatacatcaattattcaataaatttaaaaaatag 197  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  25874479 tatcatatacatcaattattcaataaatttataaaatag 25874441  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 13639410 - 13639468
Alignment:
Q  160 atcatatacatcaattattcaataaatttaaaaaatag--ttcttttttgcttataata 216  Q
    |||| |||||||||||||||||||||| |||||| |||  || ||||||||||||||||    
T  13639410 atcagatacatcaattattcaataaatctaaaaattagattttttttttgcttataata 13639468  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 13739823 - 13739881
Alignment:
Q  160 atcatatacatcaattattcaataaatttaaaaaatag--ttcttttttgcttataata 216  Q
    |||| |||||||||||||||||||||| |||||| |||  || ||||||||||||||||    
T  13739823 atcagatacatcaattattcaataaatctaaaaattagattttttttttgcttataata 13739881  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 33462664 - 33462706
Alignment:
Q  154 atacatatcatatacatcaattattcaataaatttaaaaaata 196  Q
    |||||||||||||||||| |||||||||||||| || ||||||    
T  33462664 atacatatcatatacatcgattattcaataaatatagaaaata 33462706  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 30732431 - 30732381
Alignment:
Q  165 atacatcaattattcaataaatttaaaaaatagttcttttttgcttataataa 217  Q
    ||||||||||||||||||||| ||||||||||||  ||||||| |||||||||    
T  30732431 atacatcaattattcaataaacttaaaaaatagt--ttttttgtttataataa 30732381  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 31627380 - 31627426
Alignment:
Q  169 atcaattattcaataaatttaaaaaatagttcttttttgcttataata 216  Q
    |||||||||||||||||||||||||||| || |||||| |||||||||    
T  31627380 atcaattattcaataaatttaaaaaataatt-tttttttcttataata 31627426  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 42069816 - 42069781
Alignment:
Q  160 atcatatacatcaattattcaataaatttaaaaaat 195  Q
    |||| |||||||||||||||||||||||||||||||    
T  42069816 atcaaatacatcaattattcaataaatttaaaaaat 42069781  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 11182243 - 11182278
Alignment:
Q  158 atatcatatacatcaattattcaataaatttaaaaa 193  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11182243 atatcatatacatcaattactcaataaatttaaaaa 11182278  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 34644685 - 34644651
Alignment:
Q  158 atatcatatacatcaattattcaataaatttaaaa 192  Q
    ||||||||||||||| |||||||||||||||||||    
T  34644685 atatcatatacatcatttattcaataaatttaaaa 34644651  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 14803065 - 14803158
Alignment:
Q  113 tattgtttagatttatcgaataatttatgtatctgatttcta-tacatatcatatacatcaattattcaataaatttaaaaaatagttcttttt 205  Q
    |||| ||||||||||| |||||||| |||||| |||| | || || | |||| |||||||||||||| | ||||| |||||||| ||| |||||    
T  14803065 tattttttagatttatagaataattgatgtatttgatctataatatagatcaaatacatcaattattaattaaatctaaaaaattgtttttttt 14803158  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 5950919 - 5950958
Alignment:
Q  160 atcatatacatcaattattcaataaatttaaaaaatagtt 199  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  5950919 atcaaatacattaattattcaataaatttaaaaaatagtt 5950958  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 35790435 - 35790359
Alignment:
Q  114 attgtttagatttatcgaataatttatgtatctgatttctat-acatatcatatacatcaattattcaataaatttaaaaa 193  Q
    ||||||||||||||| |||||||    |||||||| || ||| | |||||| |||||||||||||||||| ||||||||||    
T  35790435 attgtttagatttattgaataat----gtatctgacttatatcatatatcaaatacatcaattattcaatgaatttaaaaa 35790359  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 46742304 - 46742339
Alignment:
Q  160 atcatatacatcaattattcaataaatttaaaaaat 195  Q
    ||||||||||||||||||| ||||||||||||||||    
T  46742304 atcatatacatcaattatttaataaatttaaaaaat 46742339  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 48781406 - 48781458
Alignment:
Q  165 atacatcaattattcaataaatttaaaaaatagttcttttttgcttataataa 217  Q
    |||| ||||||||||| ||||| |||||||||||| | |||| ||||||||||    
T  48781406 atacttcaattattcattaaatctaaaaaatagttttctttttcttataataa 48781458  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 653300 - 653272
Alignment:
Q  165 atacatcaattattcaataaatttaaaaa 193  Q
    |||||||||||||||||||||||||||||    
T  653300 atacatcaattattcaataaatttaaaaa 653272  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 29384286 - 29384250
Alignment:
Q  158 atatcatatacatcaattattcaataaatttaaaaaa 194  Q
    |||||| |||||||||||||| |||||||||||||||    
T  29384286 atatcaaatacatcaattatttaataaatttaaaaaa 29384250  T

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