View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140_low_10 (Length: 241)

Name: NF10140_low_10
Description: NF10140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140_low_10
NF10140_low_10
[»] chr1 (2 HSPs)
chr1 (53-211)||(3324934-3325092)
chr1 (53-140)||(48315143-48315225)
[»] chr8 (4 HSPs)
chr8 (51-166)||(10227319-10227434)
chr8 (1-110)||(10227219-10227328)
chr8 (53-110)||(28733209-28733266)
chr8 (53-110)||(42476558-42476615)
[»] chr4 (6 HSPs)
chr4 (53-139)||(2737758-2737844)
chr4 (53-138)||(38372691-38372776)
chr4 (59-139)||(45065538-45065613)
chr4 (53-102)||(39264726-39264775)
chr4 (57-110)||(48997097-48997150)
chr4 (108-141)||(39264674-39264707)
[»] chr2 (2 HSPs)
chr2 (55-134)||(23757669-23757748)
chr2 (53-139)||(12197380-12197469)
[»] chr6 (1 HSPs)
chr6 (53-135)||(23112076-23112158)
[»] chr5 (2 HSPs)
chr5 (53-110)||(37344564-37344621)
chr5 (109-139)||(37344522-37344552)
[»] chr3 (4 HSPs)
chr3 (53-135)||(50301813-50301894)
chr3 (57-108)||(32862054-32862105)
chr3 (98-139)||(25638460-25638501)
chr3 (53-96)||(10773480-10773523)
[»] scaffold0064 (1 HSPs)
scaffold0064 (53-101)||(53246-53294)


Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 3324934 - 3325092
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcagtttttggatatttttgcccacccctagagacagtagaca 152  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  3324934 gttcggtttaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcaatttttggatatttttgcccacccctagagacagtggaca 3325033  T
Q  153 catgcccataattcacaaagtagtcannnnnnnnatattcaatagtaccatgagtaaca 211  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||    
T  3325034 catgcacataattcacaaagtagtcattttttttatattcaatagtaccatgagtaaca 3325092  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 48315143 - 48315225
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcagtttttggatatttttgcccacccctag 140  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||     ||||| ||| ||||||||||||||||| ||| ||||||    
T  48315143 gttcgatttaataatcaatgtaatggttcagttaattttagtttg-----gttcgattcggtttttggatatttttggccatccctag 48315225  T

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Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 10227319 - 10227434
Alignment:
Q  51 cagttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcagtttttggatatttttgcccacccctagagacagtaga 150  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10227319 cagttcggtttaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcagtttttggatatttttgcccacccctagagacagtaga 10227418  T
Q  151 cacatgcccataattc 166  Q
    ||||||||||||||||    
T  10227419 cacatgcccataattc 10227434  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 10227219 - 10227328
Alignment:
Q  1 agtagtgaagaagaagccatcggtacagttgatgaacttttttnnnnnnncagttcggttcaataaccaatgtaatggttcagttaattttagtttggtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10227219 agtagtgaagaagaagccatcggtacagttgatgaactttttttaaaaaacggttcggttcaataaccaatgtaatggttcagttaattttagtttggtt 10227318  T
Q  101 cagttcggtt 110  Q
    ||||||||||    
T  10227319 cagttcggtt 10227328  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 28733266 - 28733209
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggtt 110  Q
    |||| ||| |||||||||||||||| |||||||||||||||||| |||| ||| ||||    
T  28733266 gttctgtttaataaccaatgtaatgattcagttaattttagtttagttcggtttggtt 28733209  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 42476558 - 42476615
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggtt 110  Q
    |||| |||||||||| |||  ||| ||| |||||||||||||||||||||||||||||    
T  42476558 gttcagttcaataactaatacaatagtttagttaattttagtttggttcagttcggtt 42476615  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 2737758 - 2737844
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcagtttttggatatttttgcccaccccta 139  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| ||||||||||    
T  2737758 gttcggttcaataaccaatgtaatggttcagttaattttaatttggttcggttcggttcagtttttagatatttttacccaccccta 2737844  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 38372691 - 38372776
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcagtttttggatatttttgcccacccct 138  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| |||| ||||| |||  |||||  ||||||||||||||||||    
T  38372691 gttcggttcaataaccaatgcaatagttcagttaattttagtttagttcggttcgattcgatttttaaatatttttgcccacccct 38372776  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 45065613 - 45065538
Alignment:
Q  59 ttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcagtttttggatatttttgcccaccccta 139  Q
    ||||||||||||||||||| ||||| |||||||||||||     ||||||||| ||||||||||||||||||||| |||||    
T  45065613 ttcaataaccaatgtaatgattcagctaattttagtttg-----gttcggttcggtttttggatatttttgcccatcccta 45065538  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 39264775 - 39264726
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagtttggttca 102  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  39264775 gttcagttcaataaccaatgtaatggttcggttaattttagtttggttca 39264726  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 48997097 - 48997150
Alignment:
Q  57 ggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggtt 110  Q
    |||| ||||||||||||| |||||| |||||||||| |||||||||||||||||    
T  48997097 ggtttaataaccaatgtagtggttcggttaattttaatttggttcagttcggtt 48997150  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 39264707 - 39264674
Alignment:
Q  108 gttcagtttttggatatttttgcccacccctaga 141  Q
    ||||||||||||||||||||||||||||||||||    
T  39264707 gttcagtttttggatatttttgcccacccctaga 39264674  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 23757748 - 23757669
Alignment:
Q  55 tcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcagtttttggatatttttgcccac 134  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||||    
T  23757748 tcggttcaataaccaatgtaatggttcaattaattttagtttggttcggttcggttcagttttttgatatttttgtccac 23757669  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 12197469 - 12197380
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagtttggtt---cagttcggttcagtttttggatatttttgcccaccccta 139  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||| ||||   | ||||||||| |||||||| ||||||||| ||||||||    
T  12197469 gttcggttcaataaccagtgtaatggttcggttaattttggttcggtttggccgttcggttcggtttttggttatttttgctcaccccta 12197380  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 23112076 - 23112158
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcagtttttggatatttttgcccacc 135  Q
    ||||||||||||||||| |||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  23112076 gttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggttcggttcagtttttggatatttttgcccacc 23112158  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 37344621 - 37344564
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggtt 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  37344621 gttcggttcaataaccaatgtaatgattcagttaattttagtttgattcagttcggtt 37344564  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 37344552 - 37344522
Alignment:
Q  109 ttcagtttttggatatttttgcccaccccta 139  Q
    |||||||||||||||||||||||||||||||    
T  37344552 ttcagtttttggatatttttgcccaccccta 37344522  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 50301894 - 50301813
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcagtttttggatatttttgcccacc 135  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||  |||| ||  | |||| |||||||||||||||||    
T  50301894 gttcggatcaataaccaatgtaatggttcagttaattttagtttgattttgttc-gtctacttttaggatatttttgcccacc 50301813  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 32862105 - 32862054
Alignment:
Q  57 ggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcgg 108  Q
    ||||||||||  |||| |||| ||||||||||||||||||||||||||||||    
T  32862105 ggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 32862054  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 25638501 - 25638460
Alignment:
Q  98 gttcagttcggttcagtttttggatatttttgcccaccccta 139  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  25638501 gttcggttcggttcagtttttggttatttttgcccaccccta 25638460  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 10773523 - 10773480
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagttt 96  Q
    |||||||||||||| ||||  |||||||||||||||||||||||    
T  10773523 gttcggttcaataatcaataaaatggttcagttaattttagttt 10773480  T

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Target: scaffold0064 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 53294 - 53246
Alignment:
Q  53 gttcggttcaataaccaatgtaatggttcagttaattttagtttggttc 101  Q
    ||||||||| ||||||||| ||||||||| |||||||||||| ||||||    
T  53294 gttcggttcgataaccaatataatggttcggttaattttagtatggttc 53246  T

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