View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140_low_11 (Length: 241)
Name: NF10140_low_11
Description: NF10140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140_low_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 22617551 - 22617768
Alignment:
| Q |
24 |
cataatgcaacagaagagttcaacgcgacaattaaaaaccaaaacaaaacagaaggaaaggacaacggacttggacatcgacgtcaacaactcaaaacac |
123 |
Q |
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| T |
22617551 |
cataatgcaacagaagagttcaacgcgacaattaaaaaccaaaacaaaacagaaggaaaggacaacggacttggacatcgacatcaacaactggaaccac |
22617650 |
T |
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| Q |
124 |
actctcaactgcgagcaactgcagctacctttgaagcagacaccagttttggttcttttgtgctcgatgctacacatccactcacatcaatgtcatccaa |
223 |
Q |
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| T |
22617651 |
actctcagctgcgagcaactgcagctacctttgaagcagacaccatttttggttcttttgtgctcgatgcttcacatccacccacatcaatgtcatccaa |
22617750 |
T |
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| Q |
224 |
cgactccacaccatcagc |
241 |
Q |
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| T |
22617751 |
cgactccacaccatcagc |
22617768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 10981003 - 10981095
Alignment:
| Q |
136 |
gagcaactgcagctacctttgaagcagacaccagttttggttcttttgtgctcgatgctacacatccactcacatcaatgtcatccaacgact |
228 |
Q |
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| T |
10981003 |
gagcaactgcatctacctttgaagcagacaccaattttggttcttttgtgctcgatgcttcacacccacctacatcaatgtcatccaaagact |
10981095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 10980740 - 10980820
Alignment:
| Q |
22 |
aacataatgcaacagaagagttcaacgcgacaattaaaaaccaaaacaaaacagaaggaaaggacaacggacttggacatc |
102 |
Q |
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|||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
10980740 |
aacaaaatgcaaccgaagatttcaacgcgacaattaaaaaccaaaacaaaacagaatgaaaggacaacagacttggacatc |
10980820 |
T |
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