View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140_low_14 (Length: 223)
Name: NF10140_low_14
Description: NF10140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 7243715 - 7243861
Alignment:
| Q |
1 |
ccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgaggatatgtgtaatcgattccattatcaaggttagtcactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7243715 |
ccctgctggtctcaaggttattgctattgatcatgacatcactgttcttaacactattgaggatatgtgtaatcgattccattatcaaggttagtcactt |
7243814 |
T |
|
| Q |
101 |
tgttaattgcactttattcaattctgaagtttctatatatgttctta |
147 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
7243815 |
tgttaattgcaccttattcaattctgaagattctatatatgttctta |
7243861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 7324636 - 7324507
Alignment:
| Q |
1 |
ccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgaggatatgtgtaatcgattccattatcaaggttagtcactt |
100 |
Q |
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|||||||||||| | ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
7324636 |
ccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgaggatatgtgtaatcgatatcattatcaaggttagttactc |
7324537 |
T |
|
| Q |
101 |
tgttaattgcactttattcaattctgaagt |
130 |
Q |
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| T |
7324536 |
agttaattgcaccttattcaattctaaagt |
7324507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 7317847 - 7317719
Alignment:
| Q |
8 |
ggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgaggatatgtgtaatcgattccattatcaaggttagtcactttgttaat |
107 |
Q |
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| T |
7317847 |
ggtctcaaggttattgcaattgatcatgacatcactttcctcaactctattgaggagatgtgtaatcgatatcattaccaaggtttgttacttagttaat |
7317748 |
T |
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| Q |
108 |
tgcactttattcaattctgaagtttctat |
136 |
Q |
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||||| |||||||||||| |||||||||| |
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| T |
7317747 |
tgcacattattcaattctaaagtttctat |
7317719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 8161953 - 8162039
Alignment:
| Q |
8 |
ggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgaggatatgtgtaatcgattccattatcaaggttag |
94 |
Q |
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|||||| |||| |||| ||||||||||||||| || | ||||| | || ||||| ||||||||||||| | |||||||||||||| |
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| T |
8161953 |
ggtctctaggtccttgcaattgatcatgacatcactctccttaattccatcgaggagatgtgtaatcgatgcaattatcaaggttag |
8162039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 22766655 - 22766536
Alignment:
| Q |
1 |
ccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgaggatatgtgtaatcgattccattatcaaggttagtcactt |
100 |
Q |
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||||| ||||||||| |||||||| ||||||||||||| | || | |||||||| |||||||| ||||||||||||| |||||||||||||||| |||| |
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| T |
22766655 |
ccctgatggtctcaacgttattgcaattgatcatgacaccactttccttaacaccattgaggagatgtgtaatcgatgtcattatcaaggttagttactt |
22766556 |
T |
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| Q |
101 |
tgttaattgcactttattca |
120 |
Q |
| |
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|| |||| ||| ||||||| |
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| T |
22766555 |
ggtaaattacaccttattca |
22766536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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