View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140_low_4 (Length: 289)

Name: NF10140_low_4
Description: NF10140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140_low_4
NF10140_low_4
[»] chr5 (12 HSPs)
chr5 (148-272)||(41369800-41369925)
chr5 (73-272)||(41316310-41316509)
chr5 (79-241)||(41337250-41337412)
chr5 (61-269)||(41324382-41324590)
chr5 (73-261)||(41366481-41366666)
chr5 (76-272)||(41328277-41328473)
chr5 (76-272)||(41332290-41332486)
chr5 (73-192)||(41286399-41286518)
chr5 (70-269)||(41310573-41310772)
chr5 (73-241)||(31188382-31188550)
chr5 (144-272)||(31225232-31225360)
chr5 (144-241)||(31178408-31178505)
[»] chr4 (1 HSPs)
chr4 (68-270)||(17249065-17249267)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 148 - 272
Target Start/End: Complemental strand, 41369925 - 41369800
Alignment:
Q  148 aatctttagaagaacatcaactaggtcttcttccttgatttcttctctatgattacttttgtgatcattgatgatatcttgcaatatcatatca-gcctc 246  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| ||||     
T  41369925 aatcattagaagaacatcaactaggtcttcttccttgatttcttctctatgattgtttttgtgatcattgatgatatcttgcaatataatatcatgcctt 41369826  T
Q  247 tctctgaagtttttccattttggtct 272  Q
    ||||||||||||||||||||||||||    
T  41369825 tctctgaagtttttccattttggtct 41369800  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 272
Target Start/End: Complemental strand, 41316509 - 41316310
Alignment:
Q  73 ttgtagactaacctgaatgactgcttttatactgtcatcagtcaaggggtgttctgagtgatcggtttctcgttgaatctttagaagaacatcaactagg 172  Q
    |||| |||||||||| |||| || ||||||| |||||||||| || || |||| ||||||||   ||||  |||||||||| ||||||||||| |||||     
T  41316509 ttgtggactaacctggatgattgattttatattgtcatcagttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactaga 41316410  T
Q  173 tcttcttccttgatttcttctctatgattacttttgtgatcattgatgatatcttgcaatatcatatcagcctctctctgaagtttttccattttggtct 272  Q
    ||||| || ||| |||||||  | ||| | ||||||||||| | |||||| ||||||||| ||||||||  |||| | ||||||||||||||||||||||    
T  41316409 tcttcatcattgctttcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcatatcaagctctttgtgaagtttttccattttggtct 41316310  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 41337412 - 41337250
Alignment:
Q  79 actaacctgaatgactgcttttatactgtcatcagtcaaggggtgttctgagtgatcggtttctcgttgaatctttagaagaacatcaactaggtcttct 178  Q
    ||||||||||||||||| ||||||| | |||||||||||||| |||| ||||||| |  ||||  |||||| ||| |||||||||||||||||||||||     
T  41337412 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 41337313  T
Q  179 tccttgatttcttctctatgattacttttgtgatcattgatgatatcttgcaatatcatatca 241  Q
    |||||| ||  ||  || |||||  || | |||||||||||||| |||||||||||| |||||    
T  41337312 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatca 41337250  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 61 - 269
Target Start/End: Complemental strand, 41324590 - 41324382
Alignment:
Q  61 taacattttttattgtagactaacctgaatgactgcttttatactgtcatcagtcaaggggtgttctgagtgatcggtttctcgttgaatctttagaaga 160  Q
    ||||| |||| ||||| |||||||||| |||| ||  |||||| ||||||| || || || |||| ||||||||   ||||  |||||||||| ||||||    
T  41324590 taacacttttgattgttgactaacctggatgattgactttatattgtcatcggttaaaggatgttgtgagtgataattttcctgttgaatcttgagaaga 41324491  T
Q  161 acatcaactaggtcttcttccttgatttcttctctatgattacttttgtgatcattgatgatatcttgcaatatcatatcagcctctctctgaagttttt 260  Q
    ||||| ||||| | |||||| ||| | |||||  | ||| | ||||||||||| | ||| || ||||||||||||||||||  |||| | ||||||||||    
T  41324490 acatctactagatattcttcattgctatcttccttgtgaatgcttttgtgatcgtcgataatgtcttgcaatatcatatcaatctctttgtgaagttttt 41324391  T
Q  261 ccattttgg 269  Q
    |||||||||    
T  41324390 ccattttgg 41324382  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 73 - 261
Target Start/End: Complemental strand, 41366666 - 41366481
Alignment:
Q  73 ttgtagactaacctgaatgactgcttttatactgtcatcagtcaaggggtgttctgagtgatcggtttctcgttgaatctttagaagaacatcaactagg 172  Q
    |||| |||||||||| ||||| | ||||||| |||| || |||||||| |||| ||||||||   || | ||||||||||| ||||||||||| |||||     
T  41366666 ttgttgactaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtgat---ttacacgttgaatcttgagaagaacatctactaga 41366570  T
Q  173 tc----ttcttccttgatttcttctctatgattacttttgtgatcattgatgatatcttgcaatatcatatcagcctctctctgaagtttttc 261  Q
    ||    |||||||| | |||||| |    || ||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||    
T  41366569 tcatcattcttcctagctttcttgt----gactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttc 41366481  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 272
Target Start/End: Complemental strand, 41328473 - 41328277
Alignment:
Q  76 tagactaacctgaatgactgcttttatactgtcatcagtcaaggggtgttctgagtgatcggtttctcgttgaatctttagaagaacatcaactaggtct 175  Q
    |||||||||||| |||| || ||| ||| ||||||| || || || |||||||||||||   ||||  |||||||||| ||||||||||| ||||| |||    
T  41328473 tagactaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtgataattttcctgttgaatcttgagaagaacatctactagatct 41328374  T
Q  176 tcttccttgatttcttctctatgattacttttgtgatcattgatgatatcttgcaatatcatatcagcctctctctgaagtttttccattttggtct 272  Q
    || || ||| || ||||  | ||| ||||| ||||||| | |||||| |||||   ||||||||||  |||| | ||||||||||||||||||||||    
T  41328373 tcatcattgcttgcttccttgtgaatacttctgtgatcgtcgatgatgtcttgtgctatcatatcaatctctgtatgaagtttttccattttggtct 41328277  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 272
Target Start/End: Complemental strand, 41332486 - 41332290
Alignment:
Q  76 tagactaacctgaatgactgcttttatactgtcatcagtcaaggggtgttctgagtgatcggtttctcgttgaatctttagaagaacatcaactaggtct 175  Q
    |||||||||||| |||| || ||| ||| ||||||| || || || |||||||||| ||   ||||  |||||||||| ||||||||||| ||||| |||    
T  41332486 tagactaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtaataattttcctgttgaatcttgagaagaacatctactagatct 41332387  T
Q  176 tcttccttgatttcttctctatgattacttttgtgatcattgatgatatcttgcaatatcatatcagcctctctctgaagtttttccattttggtct 272  Q
    || || ||| || ||||  | ||| | ||| ||||||| | |||||| ||||||| ||||||||||  |||||| |||| |||||||||||||||||    
T  41332386 tcatcgttgcttgcttccttgtgaatgcttctgtgatcgtcgatgatgtcttgcattatcatatcaagctctctatgaattttttccattttggtct 41332290  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 41286518 - 41286399
Alignment:
Q  73 ttgtagactaacctgaatgactgcttttatactgtcatcagtcaaggggtgttctgagtgatcggtttctcgttgaatctttagaagaacatcaactagg 172  Q
    ||||||||||||||| ||||||||||||| | | |||||||||||||| |||| |||||| ||  ||||  |||||||||| ||||||||||||| |||     
T  41286518 ttgtagactaacctggatgactgcttttaaattatcatcagtcaagggatgttatgagtgctcactttcctgttgaatcttgagaagaacatcaattaga 41286419  T
Q  173 tcttcttccttgatttcttc 192  Q
    ||||| || ||| |||||||    
T  41286418 tcttcatctttgctttcttc 41286399  T

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Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 269
Target Start/End: Complemental strand, 41310772 - 41310573
Alignment:
Q  70 ttattgtagactaacctgaatgactgcttttatactgtcatcagtcaaggggtgttctgagtgatcggtttctcgttgaatctttagaagaacatcaact 169  Q
    |||||||||||| ||||| |||| || ||| ||| ||||||| || || || |||||||||||||   ||||  ||| |||||| ||||||||||| |||    
T  41310772 ttattgtagacttacctggatgattgatttcatattgtcatccgttaaaggatgttctgagtgataattttcctgtttaatcttgagaagaacatctact 41310673  T
Q  170 aggtcttcttccttgatttcttctctatgattacttttgtgatcattgatgatatcttgcaatatcatatcagcctctctctgaagtttttccattttgg 269  Q
    || ||||| || ||| | |||||  |  || | ||||||||||| | |||||| |||||||||||||||| |  |||| | |||| ||||||||||||||    
T  41310672 agatcttcatcattgctatcttccttgcgaatgcttttgtgatcgtcgatgatgtcttgcaatatcatataaatctctttgtgaactttttccattttgg 41310573  T

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Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 241
Target Start/End: Original strand, 31188382 - 31188550
Alignment:
Q  73 ttgtagactaacctgaatgactgcttttatactgtcatcagtcaaggggtgttctgagtgatcggtttctcgttgaatctttagaagaacatcaactagg 172  Q
    |||||||| |||| |||||| |||||| ||| ||| |||||| || || |  | |||||||||  ||||  |||||||||| ||||||  |||||||||     
T  31188382 ttgtagacgaaccagaatgattgctttcatattgttatcagttaatggattatgtgagtgatcattttcctgttgaatcttgagaagagtatcaactaga 31188481  T
Q  173 tcttcttccttgatttcttctctatgattacttttgtgatcattgatgatatcttgcaatatcatatca 241  Q
    ||||| |||||| |||||||  | ||| |  |||| ||||||  |||||||||||||||||||||||||    
T  31188482 tcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatatcttgcaatatcatatca 31188550  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 272
Target Start/End: Complemental strand, 31225360 - 31225232
Alignment:
Q  144 gttgaatctttagaagaacatcaactaggtcttcttccttgatttcttctctatgattacttttgtgatcattgatgatatcttgcaatatcatatcagc 243  Q
    |||| ||||| ||||||  ||||||||| ||||| |||||| |||||||  | ||| |  |||| ||||||| |||||||||||||||||||||||||      
T  31225360 gttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatcttgcaatatcatatcaat 31225261  T
Q  244 ctctctctgaagtttttccattttggtct 272  Q
    |||| | ||||| ||||| | ||||||||    
T  31225260 ctctttatgaagcttttcaactttggtct 31225232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 31178408 - 31178505
Alignment:
Q  144 gttgaatctttagaagaacatcaactaggtcttcttccttgatttcttctctatgattacttttgtgatcattgatgatatcttgcaatatcatatca 241  Q
    |||||||||| | |||  |||||||||| ||||| |||||| |||||||  | ||| |  |||| ||||||| || ||||||||||||||||||||||    
T  31178408 gttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaatatcatatca 31178505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 270
Target Start/End: Original strand, 17249065 - 17249267
Alignment:
Q  68 ttttattgtagactaacctgaatgactgcttttatactgtcatcagtcaaggggtgttctgagtgatcggtttctcgttgaatctttagaagaacatcaa 167  Q
    |||| ||||||||||||||| |||| || ||||||| ||||||||||||| |  | || || || |||  ||||| |||||||||| | |||| ||||||    
T  17249065 ttttcttgtagactaacctggatgattgattttatattgtcatcagtcaatgaattttgtgggtaatcactttcttgttgaatcttgataagagcatcaa 17249164  T
Q  168 ctaggtcttcttccttgatttcttctctatgattacttttgtgatcattgatgatatcttgcaatatcatatcagcctctctctgaagtttttccatttt 267  Q
    |||| ||||| ||||||  | |||   | ||   | || |||||||||  ||||||||||||||||||||||||   || || |||||||||||||||||    
T  17249165 ctagatcttcatccttgcgtgctttgttttgtccatttctgtgatcatctatgatatcttgcaatatcatatcaatttccctatgaagtttttccatttt 17249264  T
Q  268 ggt 270  Q
    |||    
T  17249265 ggt 17249267  T

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