View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140_low_5 (Length: 283)

Name: NF10140_low_5
Description: NF10140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140_low_5
NF10140_low_5
[»] chr3 (22 HSPs)
chr3 (11-276)||(14865711-14865976)
chr3 (9-276)||(17131595-17131862)
chr3 (9-271)||(12033375-12033636)
chr3 (11-270)||(19235002-19235257)
chr3 (146-271)||(23370435-23370560)
chr3 (129-276)||(51301572-51301720)
chr3 (69-258)||(13302185-13302372)
chr3 (69-258)||(13312841-13313028)
chr3 (69-258)||(13323732-13323920)
chr3 (142-216)||(10389428-10389502)
chr3 (142-216)||(10414517-10414591)
chr3 (142-216)||(10421187-10421261)
chr3 (62-200)||(17240513-17240652)
chr3 (149-206)||(24933823-24933880)
chr3 (188-276)||(10555353-10555439)
chr3 (146-200)||(9534328-9534382)
chr3 (146-200)||(18929246-18929300)
chr3 (146-198)||(20247791-20247843)
chr3 (146-198)||(24192957-24193009)
chr3 (149-201)||(41455097-41455149)
chr3 (146-201)||(16801467-16801521)
chr3 (146-200)||(14762758-14762812)
[»] scaffold0053 (1 HSPs)
scaffold0053 (11-276)||(79414-79680)
[»] chr1 (10 HSPs)
chr1 (10-276)||(20851057-20851323)
chr1 (10-276)||(20857684-20857950)
chr1 (10-276)||(21706140-21706406)
chr1 (9-276)||(21710682-21710948)
chr1 (148-242)||(20044910-20045004)
chr1 (127-200)||(18712780-18712854)
chr1 (146-200)||(20437024-20437078)
chr1 (146-200)||(32651573-32651627)
chr1 (149-201)||(41112038-41112090)
chr1 (146-200)||(19663517-19663571)
[»] chr8 (8 HSPs)
chr8 (10-276)||(24320595-24320861)
chr8 (23-200)||(29643386-29643564)
chr8 (146-276)||(44477623-44477754)
chr8 (146-276)||(44492781-44492912)
chr8 (115-200)||(18614240-18614327)
chr8 (62-200)||(23482053-23482192)
chr8 (146-198)||(8727735-8727787)
chr8 (149-201)||(23866618-23866670)
[»] chr7 (26 HSPs)
chr7 (11-276)||(16090940-16091206)
chr7 (9-276)||(20906386-20906652)
chr7 (11-276)||(29181033-29181299)
chr7 (101-276)||(2971209-2971384)
chr7 (142-276)||(14319554-14319688)
chr7 (9-107)||(2966828-2966926)
chr7 (142-276)||(14230777-14230911)
chr7 (29-261)||(2465246-2465474)
chr7 (29-261)||(3857308-3857536)
chr7 (146-271)||(14567204-14567329)
chr7 (148-216)||(31155396-31155464)
chr7 (146-258)||(21230903-21231014)
chr7 (146-200)||(11382871-11382925)
chr7 (146-200)||(11389348-11389402)
chr7 (146-201)||(14422985-14423040)
chr7 (146-200)||(16009577-16009631)
chr7 (149-201)||(12590643-12590695)
chr7 (149-201)||(13007435-13007487)
chr7 (146-202)||(20311050-20311106)
chr7 (146-200)||(13679494-13679548)
chr7 (146-200)||(15168176-15168230)
chr7 (149-201)||(12709843-12709895)
chr7 (149-201)||(13122914-13122966)
chr7 (149-201)||(13743712-13743764)
chr7 (146-198)||(16677296-16677348)
chr7 (146-198)||(17651532-17651584)
[»] chr5 (21 HSPs)
chr5 (10-276)||(19236765-19237030)
chr5 (10-276)||(22461020-22461286)
chr5 (10-276)||(22467644-22467910)
chr5 (9-270)||(20772834-20773090)
chr5 (9-270)||(20781609-20781865)
chr5 (23-270)||(24929862-24930105)
chr5 (23-276)||(28909215-28909466)
chr5 (23-276)||(28945610-28945861)
chr5 (23-276)||(28895967-28896218)
chr5 (23-276)||(28924793-28925044)
chr5 (23-276)||(28889263-28889514)
chr5 (32-209)||(20820105-20820279)
chr5 (32-209)||(20827205-20827379)
chr5 (23-208)||(34829962-34830146)
chr5 (146-266)||(38144472-38144591)
chr5 (62-200)||(18407944-18408083)
chr5 (62-200)||(23111200-23111339)
chr5 (146-202)||(22438746-22438802)
chr5 (146-200)||(19512387-19512441)
chr5 (146-200)||(28370055-28370109)
chr5 (149-201)||(23528634-23528686)
[»] scaffold0072 (1 HSPs)
scaffold0072 (11-276)||(49894-50161)
[»] chr6 (26 HSPs)
chr6 (10-276)||(20007872-20008138)
chr6 (11-270)||(9099005-9099260)
chr6 (29-261)||(21364423-21364650)
chr6 (29-261)||(23968405-23968632)
chr6 (23-271)||(31252300-31252549)
chr6 (148-276)||(11288596-11288721)
chr6 (148-216)||(15458492-15458560)
chr6 (148-216)||(15465087-15465155)
chr6 (146-276)||(34639910-34640041)
chr6 (146-276)||(34646584-34646715)
chr6 (173-276)||(28288437-28288537)
chr6 (183-276)||(24563475-24563569)
chr6 (146-208)||(10986173-10986235)
chr6 (146-258)||(24512787-24512898)
chr6 (188-276)||(24641607-24641696)
chr6 (146-201)||(29614146-29614201)
chr6 (146-200)||(4477858-4477912)
chr6 (146-200)||(23839199-23839253)
chr6 (149-201)||(12168366-12168418)
chr6 (149-201)||(19287275-19287327)
chr6 (149-201)||(19785869-19785921)
chr6 (149-201)||(19878459-19878511)
chr6 (146-201)||(930095-930150)
chr6 (146-201)||(18800438-18800493)
chr6 (148-200)||(9187498-9187550)
chr6 (149-201)||(19884235-19884287)
[»] scaffold0023 (1 HSPs)
scaffold0023 (11-276)||(135304-135568)
[»] chr2 (14 HSPs)
chr2 (9-250)||(25180880-25181121)
chr2 (10-248)||(10441-10679)
chr2 (142-276)||(27207644-27207778)
chr2 (142-276)||(26885179-26885312)
chr2 (23-276)||(23168224-23168480)
chr2 (23-276)||(23579481-23579737)
chr2 (183-276)||(27366472-27366566)
chr2 (149-276)||(5705947-5706075)
chr2 (62-200)||(23265058-23265197)
chr2 (62-200)||(23280126-23280265)
chr2 (146-200)||(6483718-6483772)
chr2 (146-200)||(6487185-6487239)
chr2 (146-200)||(21908360-21908414)
chr2 (149-201)||(26583830-26583882)
[»] chr4 (7 HSPs)
chr4 (11-239)||(16146791-16147020)
chr4 (23-208)||(27906142-27906328)
chr4 (87-198)||(14486601-14486713)
chr4 (149-276)||(53483708-53483836)
chr4 (146-202)||(15408140-15408196)
chr4 (146-201)||(11848114-11848169)
chr4 (149-201)||(8045832-8045884)
[»] scaffold1318 (1 HSPs)
scaffold1318 (62-276)||(1837-2051)
[»] scaffold0348 (1 HSPs)
scaffold0348 (11-244)||(9201-9434)
[»] scaffold0131 (1 HSPs)
scaffold0131 (36-276)||(889-1126)
[»] scaffold0127 (1 HSPs)
scaffold0127 (62-271)||(10156-10364)
[»] scaffold0001 (1 HSPs)
scaffold0001 (67-276)||(492953-493162)
[»] scaffold1469 (1 HSPs)
scaffold1469 (23-216)||(1234-1425)
[»] scaffold0553 (2 HSPs)
scaffold0553 (146-271)||(10125-10250)
scaffold0553 (173-242)||(11042-11111)
[»] scaffold0544 (1 HSPs)
scaffold0544 (146-271)||(1455-1580)
[»] scaffold0384 (1 HSPs)
scaffold0384 (30-242)||(16023-16233)
[»] scaffold0609 (1 HSPs)
scaffold0609 (23-276)||(5781-6035)
[»] scaffold0029 (3 HSPs)
scaffold0029 (29-261)||(91144-91374)
scaffold0029 (29-261)||(96870-97100)
scaffold0029 (148-201)||(111885-111938)
[»] scaffold0720 (1 HSPs)
scaffold0720 (142-276)||(3327-3461)
[»] scaffold0183 (1 HSPs)
scaffold0183 (148-270)||(6-125)
[»] scaffold0261 (1 HSPs)
scaffold0261 (23-208)||(23562-23748)
[»] scaffold0026 (2 HSPs)
scaffold0026 (146-276)||(111686-111817)
scaffold0026 (146-201)||(11850-11905)
[»] scaffold0249 (1 HSPs)
scaffold0249 (148-216)||(13879-13947)
[»] scaffold0107 (1 HSPs)
scaffold0107 (9-258)||(40475-40725)
[»] scaffold0034 (1 HSPs)
scaffold0034 (23-230)||(73161-73365)
[»] scaffold0453 (1 HSPs)
scaffold0453 (142-205)||(10546-10609)
[»] scaffold0222 (1 HSPs)
scaffold0222 (62-200)||(16736-16875)
[»] scaffold0129 (1 HSPs)
scaffold0129 (149-276)||(45198-45326)
[»] scaffold0019 (1 HSPs)
scaffold0019 (23-202)||(135349-135530)
[»] scaffold2054 (1 HSPs)
scaffold2054 (148-201)||(717-770)
[»] scaffold0235 (1 HSPs)
scaffold0235 (147-258)||(22536-22646)
[»] scaffold0099 (1 HSPs)
scaffold0099 (23-199)||(12833-13019)
[»] scaffold0146 (1 HSPs)
scaffold0146 (62-200)||(13548-13687)
[»] scaffold0004 (1 HSPs)
scaffold0004 (127-200)||(116877-116951)
[»] scaffold0924 (1 HSPs)
scaffold0924 (146-201)||(750-805)
[»] scaffold0461 (1 HSPs)
scaffold0461 (62-200)||(8-147)
[»] scaffold0247 (1 HSPs)
scaffold0247 (146-201)||(11342-11397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (146-201)||(30858-30913)
[»] scaffold0020 (1 HSPs)
scaffold0020 (127-200)||(101928-102002)
[»] scaffold0310 (1 HSPs)
scaffold0310 (146-202)||(17644-17700)
[»] scaffold0025 (1 HSPs)
scaffold0025 (146-198)||(14398-14450)
[»] scaffold0456 (2 HSPs)
scaffold0456 (146-201)||(932-987)
scaffold0456 (146-201)||(8077-8132)
[»] scaffold0090 (1 HSPs)
scaffold0090 (146-201)||(18170-18225)
[»] scaffold1461 (1 HSPs)
scaffold1461 (142-200)||(1485-1543)
[»] scaffold0317 (1 HSPs)
scaffold0317 (146-200)||(1387-1441)
[»] scaffold0124 (1 HSPs)
scaffold0124 (146-200)||(34276-34330)
[»] scaffold1773 (1 HSPs)
scaffold1773 (149-210)||(1181-1242)
[»] scaffold0796 (2 HSPs)
scaffold0796 (149-242)||(1691-1784)
scaffold0796 (149-242)||(5714-5807)
[»] scaffold0117 (2 HSPs)
scaffold0117 (148-201)||(1897-1950)
scaffold0117 (148-201)||(8574-8627)
[»] scaffold0058 (1 HSPs)
scaffold0058 (149-201)||(294-346)
[»] scaffold0006 (1 HSPs)
scaffold0006 (149-201)||(50182-50234)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 14865711 - 14865976
Alignment:
Q  11 atcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttatt 110  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| |||||    
T  14865711 atcaacaacatggattaagaaatcatactaatcatccaagtacaacattataaacctgcttcttacaccttttctttcaaaatcatcattaaccattatt 14865810  T
Q  111 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 210  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14865811 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 14865910  T
Q  211 gacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14865911 gacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 14865976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 17131595 - 17131862
Alignment:
Q  9 acatcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaaccctta 108  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||| |    
T  17131595 acatcaacaacatagattaagaaatcatactaaacatcaaagtacaacattataaacctgatccttataccttttctttcaaaatcatccttaaccctaa 17131694  T
Q  109 ttttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17131695 atttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 17131794  T
Q  209 aagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17131795 aagacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 17131862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 12033636 - 12033375
Alignment:
Q  9 acatcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaaccctta 108  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12033636 acatcaacaacatagattaagaaatcatactaaacatcaaagtacaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctta 12033537  T
Q  109 ttttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12033536 atttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 12033437  T
Q  209 aagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 271  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  12033436 aagacaaa-agcacatcaaatcagttcctaagttcttctctcttggtcttctctccttacctt 12033375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 19235257 - 19235002
Alignment:
Q  11 atcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttatt 110  Q
    |||||||| || ||||| ||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||| || |||||||||||||||| | |    
T  19235257 atcaacaatatagattaggaaatcatactaatcatcaaa-tacaacattataaacctgattcttacacattttctt-cagaatcatcattaaccctaaat 19235160  T
Q  111 ttcccaattttaccttaagaacagttcaattgattaatttt-cagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19235159 ttcccaattttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgcaa 19235060  T
Q  210 agacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 270  Q
    ||| ||  ||  |||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  19235059 agataa--agtgcagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 19235002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 23370560 - 23370435
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttctt 245  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||    
T  23370560 aattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttctt 23370461  T
Q  246 ctctcttggtcttctctccttgcctt 271  Q
    ||||||||||||||||||||||||||    
T  23370460 ctctcttggtcttctctccttgcctt 23370435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 276
Target Start/End: Original strand, 51301572 - 51301720
Alignment:
Q  129 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagca 226  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||| |||||||  | | ||||||     
T  51301572 gaacaattcaattgattaattttcagaaattacatattatgattattggaagataatctcacccttaccttagaattgcgaagacaaagaaaacacagc- 51301670  T
Q  227 aatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||  |||   ||||||||||||||||||||||||||||||||| ||||    
T  51301671 aatcgattctctagttcttctctcttggtcttctctccttgccttagctt 51301720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 258
Target Start/End: Complemental strand, 13302372 - 13302185
Alignment:
Q  69 attcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt-aagaacagttcaattgattaattttcagaaattatatatta 167  Q
    ||||||| ||| || ||||| || ||||||| |||||| | || |||| ||||| ||| ||||||| | || ||||||||||||||||||||| ||||||    
T  13302372 attcttacaccattcctttcgaagtcatcatcaaccctaaattcccca-ttttatcttcaagaacaatgcatttgattaattttcagaaattacatatta 13302274  T
Q  168 tgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtctt 258  Q
    ||| ||||||||||||||| |||||||||||||||||||   ||| ||| | ||||||||||||||||||| |||| |||| |||| ||||    
T  13302273 tgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaacacagcaaatcagttcctaggttcatctcccttgttctt 13302185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 258
Target Start/End: Complemental strand, 13313028 - 13312841
Alignment:
Q  69 attcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt-aagaacagttcaattgattaattttcagaaattatatatta 167  Q
    ||||||| ||| || ||||| || ||||||| |||||| | || ||| |||||| ||| ||||||| | || |||||||||||||| |||||| ||||||    
T  13313028 attcttacaccattcctttcgaagtcatcatcaaccctaaatt-ccctattttatcttcaagaacaatccatttgattaattttcaaaaattacatatta 13312930  T
Q  168 tgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtctt 258  Q
    ||| ||||||||||||||| |||||||||||||||||||   ||| ||| | ||||||||||||||||||| |||| |||| |||| ||||    
T  13312929 tgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaacacagcaaatcagttcctaggttcatctcccttgttctt 13312841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 258
Target Start/End: Complemental strand, 13323920 - 13323732
Alignment:
Q  69 attcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt-aagaacagttcaatt-gattaattttcagaaattatatatt 166  Q
    ||||||| ||| || ||||| || ||||||| |||||| | || |||||||||| ||| ||||||| |  |||| ||||||||||||||||||| |||||    
T  13323920 attcttacaccattcctttcgaagtcatcatcaaccctaaatt-cccaattttatcttcaagaacaatctaatttgattaattttcagaaattacatatt 13323822  T
Q  167 atgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtctt 258  Q
    |||| ||||||||||||||| |||||||||||||||||||   ||| ||| |   ||||||||||||||||| ||||||||| |||| ||||    
T  13323821 atgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaaatcagcaaatcagttcctaggttcttctcccttgttctt 13323732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 10389502 - 10389428
Alignment:
Q  142 gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 216  Q
    ||||| ||||||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  10389502 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 10389428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 10414591 - 10414517
Alignment:
Q  142 gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 216  Q
    ||||| ||||||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  10414591 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 10414517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 10421261 - 10421187
Alignment:
Q  142 gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 216  Q
    ||||| ||||||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  10421261 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 10421187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 17240652 - 17240513
Alignment:
Q  62 aaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt--aagaacagttcaatt-gattaattttcagaaat 158  Q
    |||| ||||||||| ||| || |||||||||||| ||| |||||| |||  |||||||||   ||  ||||||| ||||||| ||| |||||||||||||    
T  17240652 aaacatgattcttacaccattcctttcaaaatcagcatcaaccctaatt--cccaatttttattttcaagaacaattcaattagatcaattttcagaaat 17240555  T
Q  159 tatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||| ||||| || |||||| ||||| || |||||||||||||    
T  17240554 tatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 24933880 - 24933823
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 206  Q
    |||||||||||||| ||||||| |||||| ||||| || |||||||||||||||||||    
T  24933880 tttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattg 24933823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 10555353 - 10555439
Alignment:
Q  188 cacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||||||||||||||| ||| ||||| || ||  ||||||| | |||||| |||||||||||||||||||| ||||||||| ||||    
T  10555353 cacccttaccttagaattgtaaacacaaa-agtacgacaaatcaatccctaagctcttctctcttggtcttctc-ccttgccttagctt 10555439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 9534328 - 9534382
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  9534328 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 18929246 - 18929300
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    |||||||||||||||||||| |||| |||||| ||||| || |||||||||||||    
T  18929246 aattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 20247843 - 20247791
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacct 198  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||    
T  20247843 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 24192957 - 24193009
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacct 198  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||    
T  24192957 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 41455149 - 41455097
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  41455149 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 41455097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 16801521 - 16801467
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||||||||| |||| |||||| ||||| || ||||||||||||||    
T  16801521 aattttcagaaattatatat-atgattattgagagatagtctcacccttaccttag 16801467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 14762812 - 14762758
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||| ||||||| ||| || ||||| || |||||||||||||    
T  14762812 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 79680 - 79414
Alignment:
Q  11 atcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttatt 110  Q
    |||||||||||||||||||||||||||||||||||  || |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  79680 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttatt 79581  T
Q  111 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 210  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  79580 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 79481  T
Q  211 gacaaatagcacagc-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  79480 gacaaatagcacagcaaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 79414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 20851323 - 20851057
Alignment:
Q  10 catcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttat 109  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||| |     
T  20851323 catcaacaacatagattaagaaatcatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaa 20851224  T
Q  110 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20851223 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 20851124  T
Q  210 agacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20851123 agacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 20851057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 20857950 - 20857684
Alignment:
Q  10 catcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttat 109  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||| |     
T  20857950 catcaacaacatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaa 20857851  T
Q  110 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20857850 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 20857751  T
Q  210 agacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20857750 agacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 20857684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 21706140 - 21706406
Alignment:
Q  10 catcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttat 109  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||| |     
T  21706140 catcaacaacatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaa 21706239  T
Q  110 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21706240 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 21706339  T
Q  210 agacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21706340 agacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 21706406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 21710682 - 21710948
Alignment:
Q  9 acatcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaaccctta 108  Q
    ||||||||||||| ||||||| ||||||||||| |||||| ||| ||||||| ||||||||| ||||||| |||||||||||||||||| | |||||| |    
T  21710682 acatcaacaacatagattaaggaatcatactaaacatcaa-gtataacattataaacctgatccttatactttttctttcaaaatcatcttaaaccctaa 21710780  T
Q  109 ttttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21710781 atttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 21710880  T
Q  209 aagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21710881 aagacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 21710948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 20045004 - 20044910
Alignment:
Q  148 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagtt 242  Q
    ||||||||| |||||||||| ||  |||||| ||||||||||||||||||||||||||| |   | || || ||||||||||||| |||||||||    
T  20045004 ttttcagaatttatatattaagatcattgaaggataatcccacccttaccttagaattgtaggaagaattaacacagcaaatcagctcctaagtt 20044910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 18712780 - 18712854
Alignment:
Q  127 aagaacagttcaatt-gattaattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||| ||||||| ||| ||||||||||||||||||| ||||| |||||| ||||| || ||||| |||||||    
T  18712780 aagaacaattcaattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 20437078 - 20437024
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  20437078 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 32651573 - 32651627
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||||| ||||| |||||| ||||| || |||||||||||||    
T  32651573 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 41112038 - 41112090
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  41112038 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 41112090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 19663571 - 19663517
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||||| ||||| ||| || ||||| || |||||||||||||    
T  19663571 aattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 24320861 - 24320595
Alignment:
Q  10 catcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttat 109  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||||||| | |||||||||||||||||||||||| |||||||| |     
T  24320861 catcaacaacatagattaagaaatcatactaaacatcaaagtacaacaatataaacctgatccctataccttttctttcaaaatcatccttaaccctaaa 24320762  T
Q  110 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24320761 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 24320662  T
Q  210 agacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24320661 agacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 24320595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 29643564 - 29643386
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaatttta 122  Q
    ||||||||||||||||| | || |||| |||||||  |  ||||  ||||||| |||  | ||| | |||||||||| |||||||| || | ||||||||    
T  29643564 gattaagaaatcatactgaacaccaaattacaacacaattaacccaattcttacaccaatccttcctaaatcatcatcaacccttaatt-ctcaatttta 29643466  T
Q  123 ccttaa-gaacagttcaatt-gattaattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
     ||| | ||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  29643465 tcttcatgaacaattcaatttgattaattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 276
Target Start/End: Original strand, 44477623 - 44477754
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttc 243  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||||||||  |||||||  | | |||||| ||||  |||   |||||    
T  44477623 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtgaagacaaagaaaacacagc-aatcgattctctagttc 44477721  T
Q  244 ttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||||||||||||||||||||| ||||    
T  44477722 ttctctcttggtcttctctccttgccttagctt 44477754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 276
Target Start/End: Original strand, 44492781 - 44492912
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttc 243  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||||||||  |||||||  | | |||||| ||||  |||   |||||    
T  44492781 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtgaagacaaagaaaacacagc-aatcgattctctagttc 44492879  T
Q  244 ttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||||||||||||||||||||| ||||    
T  44492880 ttctctcttggtcttctctccttgccttagctt 44492912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 18614240 - 18614327
Alignment:
Q  115 caattttacctt-aagaacagttcaattg-attaattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    |||||||| ||| ||||||| |||||||| || |||||||||||||||||||| |||| |||||| ||||| || |||||||||||||    
T  18614240 caattttatcttcaagaacaattcaattggatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 23482192 - 23482053
Alignment:
Q  62 aaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt--aagaacagttcaatt-gattaattttcagaaat 158  Q
    |||| ||||||||| ||| |  |||||||||||| ||| |||||| |||  |||||||||   ||  ||||||| ||||||| ||| |||||||||||||    
T  23482192 aaacatgattcttacaccatccctttcaaaatcagcatcaaccctaatt--cccaatttttattttcaagaacaattcaattagatcaattttcagaaat 23482095  T
Q  159 tatatattatgactattgaaagataatcccacccttacctta 200  Q
    |||||| ||||| |||||| ||||| || |||||||||||||    
T  23482094 tatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 8727787 - 8727735
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacct 198  Q
    ||||||||||||||||| ||||||| ||||||  ||||||| |||||||||||    
T  8727787 aattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 23866618 - 23866670
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  23866618 tttcaggaattataaattatgattattgagagatagtctcacccttaccttag 23866670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 16090940 - 16091206
Alignment:
Q  11 atcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttatt 110  Q
    |||||||||||||||||||||||||||||||||||  || |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16090940 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttatt 16091039  T
Q  111 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 210  Q
    ||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16091040 ttcccaattttaccttaggaacagtttaattgattaactttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 16091139  T
Q  211 gacaaatagcacagc-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16091140 gacaaatagcacagcaaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 16091206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 20906652 - 20906386
Alignment:
Q  9 acatcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaaccctta 108  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  20906652 acatcaacaacatagattaagaaatcatactaaacatcaaagtacaacattataaacttgattcttataccttttctttcaaaatcatcattaaccctta 20906553  T
Q  109 ttttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
     || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20906552 att-cccaattttaccttaagaatagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 20906454  T
Q  209 aagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    | |||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  20906453 aggacaaatagctcagcaaatccgttcctaagttcttctctcttggtcttctccccttgccttagctt 20906386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 29181299 - 29181033
Alignment:
Q  11 atcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttatt 110  Q
    |||||||||||||||||||||||||||||||||||  || |||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||    
T  29181299 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataagcctgattcttacaccttttctttcaaaatcatcattaacccttatt 29181200  T
Q  111 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 210  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29181199 ttccaaattttaccttaagaatagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 29181100  T
Q  211 gacaaatagcacagc-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29181099 gacaaatagcacagcaaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 29181033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 101 - 276
Target Start/End: Original strand, 2971209 - 2971384
Alignment:
Q  101 aacccttattttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2971209 aacccttatcttcccaattttaccttaagaacagttcaattgattaattttcagaaattataaattatgactattgaaagataatcccacccttacctta 2971308  T
Q  201 gaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2971309 gaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 2971384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 142 - 276
Target Start/End: Complemental strand, 14319688 - 14319554
Alignment:
Q  142 gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagt 241  Q
    ||||||||||||||||||||| ||||  |  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  14319688 gattaattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatccgttcctaagt 14319589  T
Q  242 tcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||||||| |||||||||||||||||| ||||    
T  14319588 tcttctctcttagtcttctctccttgccttagctt 14319554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 2966828 - 2966926
Alignment:
Q  9 acatcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaaccctt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2966828 acatcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaaacatcattaaccctt 2966926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 14230777 - 14230911
Alignment:
Q  142 gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagt 241  Q
    ||||||||||||||||||||| ||||     |||||||||||||||||||||||||||||||||||||||||||| |||||  |||||| ||||||||||    
T  14230777 gattaattttcagaaattatacattaaattcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacgacaaatccgttcctaagt 14230876  T
Q  242 tcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||| |||||||||||||||||||||||||| ||||    
T  14230877 tctcctctcttggtcttctctccttgccttagctt 14230911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 2465246 - 2465474
Alignment:
Q  29 gaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttaccttaa 128  Q
    ||||||||| ||||||||||| || ||||||| |||||| | ||||| || ||||||| ||||||   |||||||||| |||| || | ||||||| |||    
T  2465246 gaaatcatattaatcatcaaa-tataacattataaacctaaatcttacacattttctt-caaaattgccattaaccctaatttcccaatttttaccataa 2465343  T
Q  129 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaa 228  Q
     ||||||| ||||| ||||||||||||||| ||||||||| | ||||||| ||| ||||||||||||||||||||||||||||| ||  ||  |||||||    
T  2465344 aaacagttaaattgcttaattttcagaaatcatatattatcattattgaaggatgatcccacccttaccttagaattgcaaagataa--agtgcagcaaa 2465441  T
Q  229 tcagttcctaagttcttctctcttggtcttctc 261  Q
     || || ||||| ||||||||||||||||||||    
T  2465442 ccaatttctaagctcttctctcttggtcttctc 2465474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 3857536 - 3857308
Alignment:
Q  29 gaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaatttt---acct 125  Q
    ||||||||| ||||||||||| |||||||||| |||||| | ||||| || ||||||| ||||||   |||||||||| |||| |||||||||   |||     
T  3857536 gaaatcatattaatcatcaaa-tacaacattataaacctaaatcttacacattttctt-caaaattgccattaaccctaattt-cccaatttttttacca 3857440  T
Q  126 taagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc 225  Q
    ||| ||||||| ||||| ||||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||| |||| ||  ||  ||||    
T  3857439 taaaaacagttaaattgcttaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc-aagataa--agtgcagc 3857344  T
Q  226 aaatcagttcctaagttcttctctcttggtcttctc 261  Q
    ||| || || ||||| ||||||||||||||||||||    
T  3857343 aaaccaatttctaagctcttctctcttggtcttctc 3857308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 271
Target Start/End: Original strand, 14567204 - 14567329
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttctt 245  Q
    ||||||||||||  ||||||||| |  |||||| | ||  | ||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||    
T  14567204 aattttcagaaaccatatattataatcattgaaggttagcctcacccttaccttagaattgtagagacaaaaagcacagcaaatccgttcctaagttctt 14567303  T
Q  246 ctctcttggtcttctctccttgcctt 271  Q
    ||||||||||||| ||||||||||||    
T  14567304 ctctcttggtcttttctccttgcctt 14567329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 31155396 - 31155464
Alignment:
Q  148 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 216  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  31155396 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 31155464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 21231014 - 21230903
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc-aaatcagttcctaagttct 244  Q
    ||||||||||||||||||| ||||| |||||| ||||| || ||||||||||||||| ||||  ||| | || ||||||| ||||| ||||||| | |||    
T  21231014 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgc--agaaagattgcacagcaaaatcggttcctaggctct 21230917  T
Q  245 tctctcttggtctt 258  Q
    ||||||||| ||||    
T  21230916 tctctcttgttctt 21230903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 11382925 - 11382871
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||||||||||| |||||| ||||| || |||||||||||||    
T  11382925 aattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 11389402 - 11389348
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||||||||||| |||||| ||||| || |||||||||||||    
T  11389402 aattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 14422985 - 14423040
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  14422985 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 14423040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 16009577 - 16009631
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  16009577 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 12590695 - 12590643
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  12590695 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 12590643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 13007435 - 13007487
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  13007435 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 13007487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 20311106 - 20311050
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttaga 202  Q
    |||||||||||||||||  |||||| |||||| ||||| || |||||||||||||||    
T  20311106 aattttcagaaattatacgttatgattattgagagatagtctcacccttaccttaga 20311050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 13679494 - 13679548
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    |||||||| ||||||||||| ||||  ||||||||||| || |||||||||||||    
T  13679494 aattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 15168176 - 15168230
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||| ||||||| ||| || ||||| || |||||||||||||    
T  15168176 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 12709895 - 12709843
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  12709895 tttcaggaattataaattatgattattgagagatagtctcacccttaccttag 12709843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 13122966 - 13122914
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  13122966 tttcaggaattataaattatgattattgagagatagtctcacccttaccttag 13122914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 13743712 - 13743764
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  13743712 tttcaggaattataaattatgattattgagagatagtctcacccttaccttag 13743764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 16677296 - 16677348
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacct 198  Q
    |||||| |||||||||| ||||||| |||||| ||||| || |||||||||||    
T  16677296 aatttttagaaattatagattatgattattgagagatagtctcacccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 17651532 - 17651584
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacct 198  Q
    |||||| |||||||||| ||||||| |||||| ||||| || |||||||||||    
T  17651532 aatttttagaaattatagattatgattattgagagatagtctcacccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 19236765 - 19237030
Alignment:
Q  10 catcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttat 109  Q
    |||||||||||| |||||||||  |||||||| | ||||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||| |     
T  19236765 catcaacaacatagattaagaacacatactaaac-tcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaa 19236863  T
Q  110 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19236864 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 19236963  T
Q  210 agacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19236964 agacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 19237030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 22461020 - 22461286
Alignment:
Q  10 catcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttat 109  Q
    |||||||||||| || ||||||| |||||||| ||||||||||| ||| || ||||||||| |||||||||||||||||||| ||||| |||||||| |     
T  22461020 catcaacaacatagaataagaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttcaaa-tcatccttaaccctaaa 22461118  T
Q  110 tttcccaattttaccttaagaacagttcaattgattaatttt-cagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22461119 tttcccaattttaccttaagaacagttcaattgattaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 22461218  T
Q  209 aagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  22461219 aagacaaaaggcacagcaaatcagttcttaagttcttctctcttggtcttctctccttgccttagctt 22461286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 22467644 - 22467910
Alignment:
Q  10 catcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttat 109  Q
    |||||||||||| || ||||||| |||||||| ||||||||||| ||| || ||||||||| |||||||||||||||||||| ||||| |||||||| |     
T  22467644 catcaacaacatagaataagaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttcaaa-tcatccttaaccctaaa 22467742  T
Q  110 tttcccaattttaccttaagaacagttcaattgattaatttt-cagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22467743 tttcccaattttaccttaagaacagttcaattgattaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 22467842  T
Q  209 aagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  22467843 aagacaaaaggcacagcaaatcagttcttaagttcttctctcttggtcttctctccttgccttagctt 22467910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 20772834 - 20773090
Alignment:
Q  9 acatcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaaccctta 108  Q
    |||||||||| || || || ||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||| ||||||||||||||||||| |    
T  20772834 acatcaacaatatagagtaggaaatcatactaatcatcaaa-tacaacattataaacctgattcttacacattttctt-caaaatcatcattaaccctaa 20772931  T
Q  109 ttttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20772932 atttcccaattttaccttaagaacagttaaattgattaattttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgca 20773031  T
Q  209 aagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 270  Q
    |||| ||  || ||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  20773032 aagataa--agtacagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 20773090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 20781609 - 20781865
Alignment:
Q  9 acatcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaaccctta 108  Q
    |||||||||| || || || ||||||||| ||||||||||| |||||||||| |||||||||||||| || ||||||| ||||||||||||||||||| |    
T  20781609 acatcaacaatatagagtaggaaatcataataatcatcaaa-tacaacattataaacctgattcttacacattttctt-caaaatcatcattaaccctaa 20781706  T
Q  109 ttttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||    
T  20781707 atttcccaattttaccttaagaacagttaaattgattaattttcagaaatcatatattataattattgaaagataatcccacccttaccttagaattgca 20781806  T
Q  209 aagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 270  Q
    |||| ||  || ||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  20781807 aagataa--agtacagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 20781865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 24930105 - 24929862
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaatttta 122  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||||||||||| || ||| ||| || |||||||||||||||| | |||||||||||||    
T  24930105 gattaggaaatcatactaatcatcaaa-tacaacattataaacctgattcttacacatttcctt-cagaatcatcattaaccctaaatttcccaatttta 24930008  T
Q  123 ccttaagaacagttcaattgattaa-ttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagca 221  Q
    |||||||||||||| |||||||||| |||| |||||| ||||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||  ||      
T  24930007 ccttaagaacagttaaattgattaattttttagaaatcatatattagaactattgaaagataatcccacccttaccttagaattgtaaagataa--agtg 24929910  T
Q  222 cagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 270  Q
    |||||| ||| |||||||| |||||||||||||||||||| ||||||||    
T  24929909 cagcaagtcaattcctaagctcttctctcttggtcttctc-ccttgcct 24929862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 28909466 - 28909215
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaatttt- 121  Q
    ||||| ||||||||||||||||| ||| |||||| | | |||||||| | |||  | ||||||| |||||||||||| || ||| ||||||||||||||     
T  28909466 gattaggaaatcatactaatcattaaa-tacaacgtcataaacctgaattttacgcattttctt-caaaatcatcatcaaacctaattttcccaattttt 28909369  T
Q  122 accttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagca 221  Q
    |||||||||||| || ||| | ||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||| ||||    
T  28909368 accttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacgacaaa-agca 28909270  T
Q  222 cagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28909269 cagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28909215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 28945861 - 28945610
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaatttt- 121  Q
    ||||| ||||||||||||||||| ||| |||||| | | |||||||| | |||  | ||||||| |||||||||||| || ||| ||||||||||||||     
T  28945861 gattaggaaatcatactaatcattaaa-tacaacgtcataaacctgaattttacgcattttctt-caaaatcatcatcaaacctaattttcccaattttt 28945764  T
Q  122 accttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagca 221  Q
    |||||||||||| || ||| | ||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||| ||||    
T  28945763 accttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacgacaaa-agca 28945665  T
Q  222 cagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28945664 cagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28945610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 28896218 - 28895967
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaatttt- 121  Q
    ||||| ||||||||||||||||| ||| |||||| | | |||||||| | |||  | ||||||| |||||||||||| || ||| ||||||||||||||     
T  28896218 gattaggaaatcatactaatcattaaa-tacaacgtcataaacctgaattttacgcattttctt-caaaatcatcatcaaacctaattttcccaattttt 28896121  T
Q  122 accttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagca 221  Q
    |||||||||||| || ||| | ||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||| | |||| ||||    
T  28896120 accttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacggcaaa-agca 28896022  T
Q  222 cagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28896021 cagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28895967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 28925044 - 28924793
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaatttt- 121  Q
    ||||| ||||||||||||||||| ||| |||||| | | |||||||| | |||  | ||||||| |||||||||||| || ||| ||||||||||||||     
T  28925044 gattaggaaatcatactaatcattaaa-tacaacgtcataaacctgaattttacgcattttctt-caaaatcatcatcaaacctaattttcccaattttt 28924947  T
Q  122 accttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagca 221  Q
    |||||||||||| || ||| | ||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||| | |||| ||||    
T  28924946 accttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacggcaaa-agca 28924848  T
Q  222 cagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28924847 cagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 28889514 - 28889263
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaatttt- 121  Q
    ||||| ||||||||||||||||| ||| |||||| | | |||||||| | |||  | ||||||| |||||||||||| || ||| ||||||||||||||     
T  28889514 gattaggaaatcatactaatcattaaa-tacaacgtcataaacctgaattttacgcattttctt-caaaatcatcatcaaacctaattttcccaattttt 28889417  T
Q  122 accttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagca 221  Q
    |||||||||||| || ||| | ||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||| | |||| ||||    
T  28889416 accttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacggcaaa-agca 28889318  T
Q  222 cagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
      |||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28889317 atgcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28889263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 20820105 - 20820279
Alignment:
Q  32 atcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttaccttaagaa 131  Q
    |||||||| ||||||||| |||||||||| |||||||| |||||| | || |||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  20820105 atcatactcatcatcaaa-tacaacattataaacctgaatcttatgcattctctt-caaaatcatcattaaccctaattttcc-aattttaccttaagaa 20820201  T
Q  132 cagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    | ||| ||||  |||||  |||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  20820202 cggttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccacccttaccttagaattgcaa 20820279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 20827205 - 20827379
Alignment:
Q  32 atcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttaccttaagaa 131  Q
    |||||||| ||||||||| |||||||||| |||||||| |||||| | || |||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  20827205 atcatactcatcatcaaa-tacaacattataaacctgaatcttatgcattctctt-caaaatcatcattaaccctaattttcc-aattttaccttaagaa 20827301  T
Q  132 cagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    | ||| ||||  |||||  |||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  20827302 cggttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccacccttaccttagaattgcaa 20827379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 208
Target Start/End: Original strand, 34829962 - 34830146
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcatta-acccttattttcccaatttt 121  Q
    ||||||||||||||||| ||||||||| |||||||    |||| ||||||||| | |||| |||||||||||| ||| | ||||| ||| ||  ||||||    
T  34829962 gattaagaaatcatactgatcatcaaattacaacacattaaacatgattcttacatcttt-ctttcaaaatcagcatcataccctaattctc--aatttt 34830058  T
Q  122 acctt-aagaacagttcaatt-gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
    | ||| ||||||  ||| ||| |||| |||||||||||||||| ||||  | |||||||||||||||||||||||||||||||||||||    
T  34830059 atcttcaagaactattctattagattgattttcagaaattatacattaa-attattgaaagataatcccacccttaccttagaattgca 34830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 38144591 - 38144472
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagca-aatcagttcctaagttct 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||  |||||  ||   ||  ||||||| |||| |||||||||||||    
T  38144591 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgca--gaatgattacacagcacaatcggttcctaagttct 38144494  T
Q  245 tctctcttggtcttctctcctt 266  Q
    ||||||||||||||||||||||    
T  38144493 tctctcttggtcttctctcctt 38144472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 18408083 - 18407944
Alignment:
Q  62 aaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt--aagaacagttcaatt-gattaattttcagaaat 158  Q
    |||| ||||||||| ||| || |||||||||||| ||| |||||| |||  |||||||||   ||  ||||||| ||||||| ||| |||||||||||||    
T  18408083 aaacatgattcttacaccattcctttcaaaatcagcatcaaccctaatt--cccaatttttattttcaagaacaattcaattagatcaattttcagaaat 18407986  T
Q  159 tatatattatgactattgaaagataatcccacccttacctta 200  Q
    |||||||||||| |||||| ||||| || |||||||||||||    
T  18407985 tatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 23111339 - 23111200
Alignment:
Q  62 aaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt--aagaacagttcaatt-gattaattttcagaaat 158  Q
    |||| ||||||||| ||| |  |||||||||||| ||| |||||| |||  |||||||||   ||  ||||||| ||||||| ||| |||||||||||||    
T  23111339 aaacatgattcttacaccatccctttcaaaatcagcatcaaccctaatt--cccaatttttattttcaagaacaattcaattagatcaattttcagaaat 23111242  T
Q  159 tatatattatgactattgaaagataatcccacccttacctta 200  Q
    |||||| ||||| |||||| ||||| || |||||||||||||    
T  23111241 tatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 22438802 - 22438746
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttaga 202  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||||    
T  22438802 aattttcagaaattatacattatgattattgagagatagtctcacccttaccttaga 22438746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 19512387 - 19512441
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  19512387 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 28370109 - 28370055
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  28370109 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 23528634 - 23528686
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  23528634 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 23528686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 50161 - 49894
Alignment:
Q  11 atcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttatt 110  Q
    ||||||||||||||||||||||||||||||||| |  || || ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50161 atcaacaacatggattaagaaatcatactaatctttcaaatataacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttatt 50062  T
Q  111 ttcccaatttt-accttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061 ttcccaatttttaccttaagaacagtttaattgattaatttttagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaa 49962  T
Q  210 agacaaatagcacagc-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  49961 agacaaatagcacaacaaaatcagttcctaagttcttctctcttggttttctctctttgccttagctt 49894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 20008138 - 20007872
Alignment:
Q  10 catcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttat 109  Q
    ||||||||| || |||||||||| |||||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||| |     
T  20008138 catcaacaatatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaa 20008039  T
Q  110 tttcccaattttaccttaagaacagttcaattgattaa-ttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20008038 tttcccaattttaccttaagaacagttcaattgattaatttttcataaattatatattatgactattgaaagatgatcccacccttaccttagaattgca 20007939  T
Q  209 aagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  20007938 aagacaaa-agcacagcaaatgagttcctaagttcttctctcttggtcttctctccttgccttagctt 20007872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 9099260 - 9099005
Alignment:
Q  11 atcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttatt 110  Q
    |||||||| || ||||| ||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||| || |||||||||||||||| | |    
T  9099260 atcaacaatatagattaggaaatcatactaatcatcaaa-tacaacattataaacctgattcttacacattttctt-cagaatcatcattaaccctaaat 9099163  T
Q  111 ttcccaattttaccttaagaacagttcaattgattaatttt-cagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9099162 ttcccaattttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgcaa 9099063  T
Q  210 agacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 270  Q
    ||| ||  ||  |||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  9099062 agataa--agtgcagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 9099005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 21364650 - 21364423
Alignment:
Q  29 gaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttaccttaa 128  Q
    ||||||||| ||||||||||| |||||||||| |||||| | ||||| |  |||||||  |||||   |||||||||| |||| |||||||||||| |||    
T  21364650 gaaatcatattaatcatcaaa-tacaacattataaacctaagtcttacatattttcttcaaaaatgc-cattaaccctaattt-cccaattttaccataa 21364554  T
Q  129 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaa 228  Q
     ||||||| ||||| ||||||||||||||| ||||||||| | || |||| |||||||||||||||||||| |||||||||||||||| |||||||||||    
T  21364553 -aacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctttgaattgcaaagacaaa-agcacagcaaa 21364456  T
Q  229 tcagttcctaagttcttctctcttggtcttctc 261  Q
     || |||||| ||||||||||||||||||||||    
T  21364455 acaattcctaggttcttctctcttggtcttctc 21364423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 23968632 - 23968405
Alignment:
Q  29 gaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttaccttaa 128  Q
    ||||||||| ||||||||||| |||||||||| |||||| | ||||| |  |||||||  |||||   |||||||||| |||| |||||||||||| |||    
T  23968632 gaaatcatattaatcatcaaa-tacaacattataaacctaagtcttacatattttcttcaaaaatgc-cattaaccctaattt-cccaattttaccataa 23968536  T
Q  129 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaa 228  Q
     ||||||| ||||| ||||||||||||||| ||||||||| | || |||| |||||||||||||||||||| |||||||||||||||| |||||||||||    
T  23968535 -aacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctttgaattgcaaagacaaa-agcacagcaaa 23968438  T
Q  229 tcagttcctaagttcttctctcttggtcttctc 261  Q
     || |||||| ||||||||||||||||||||||    
T  23968437 acaattcctaggttcttctctcttggtcttctc 23968405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 31252300 - 31252549
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcatta-acccttattttcccaatttt 121  Q
    ||||||||||||||||  | ||||||| |||||||    |||| | ||||||| |||||| |||||||||||| | | | ||||| ||| ||  ||||||    
T  31252300 gattaagaaatcatacatagcatcaaattacaacacgttaaacataattcttacaccttt-ctttcaaaatcagcctcataccctaattctc--aatttt 31252396  T
Q  122 acctt-aagaacagttcaatt-gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--at 217  Q
    | ||| ||||||  ||||||| ||||||||||||||||||||||||||| |  ||| |||||||||| ||||||||||||||||||||||||||||  |     
T  31252397 atcttcaagaactattcaattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttagaattgcaaagacaaagaa 31252496  T
Q  218 agcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 271  Q
    | |||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  31252497 aacacagc-aatcggttcctaagttcttctctcttggtcttctctccttgcctt 31252549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 148 - 276
Target Start/End: Complemental strand, 11288721 - 11288596
Alignment:
Q  148 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttct 247  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||| ||||||    
T  11288721 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagaattgccaagacaaa-aacacagc-aatcagttcctaagctcttct 11288624  T
Q  248 ctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||||||| ||||||||| ||||    
T  11288623 ctcttggtcttctc-ccttgccttagctt 11288596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 15458492 - 15458560
Alignment:
Q  148 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 216  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  15458492 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 15458560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 15465087 - 15465155
Alignment:
Q  148 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 216  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  15465087 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 15465155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 276
Target Start/End: Complemental strand, 34640041 - 34639910
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttc 243  Q
    ||||||||||||||||| |||| || |||||| ||||| || |||||||||||||||||||| |||||||  | | |||||| ||||  |||   |||||    
T  34640041 aattttcagaaattatagattaagattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttc 34639943  T
Q  244 ttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||||||||||||||||||||| ||||    
T  34639942 ttctctcttggtcttctctccttgccttagctt 34639910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 276
Target Start/End: Complemental strand, 34646715 - 34646584
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttc 243  Q
    ||||||||||||||||| |||| || |||||| ||||| || |||||||||||||||||||| |||||||  | | |||||| ||||  |||   |||||    
T  34646715 aattttcagaaattatagattaagattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttc 34646617  T
Q  244 ttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||||||||||||||||||||| ||||    
T  34646616 ttctctcttggtcttctctccttgccttagctt 34646584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 173 - 276
Target Start/End: Complemental strand, 28288537 - 28288437
Alignment:
Q  173 attgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttt 272  Q
    ||||| ||||| || ||||||||||||||||||||||||||||| | |||||| |||||||||||||| | |||||||||||||||||| |||||||||     
T  28288537 attgagagatagtctcacccttaccttagaattgcaaagacaaa-aacacagc-aatcagttcctaagcttttctctcttggtcttctc-ccttgcctta 28288441  T
Q  273 gctt 276  Q
    ||||    
T  28288440 gctt 28288437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 24563475 - 24563569
Alignment:
Q  183 aatcccacccttaccttagaattgcaaagacaaatag--cacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||| ||||||||||||||||||||||||||||| |   |||||||| ||  ||||  ||||||||||||||||||||||||||||||||| ||||    
T  24563475 aatctcacccttaccttagaattgcaaagacaaagaaaacacagcaa-tcgattccctagttcttctctcttggtcttctctccttgccttagctt 24563569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 10986235 - 10986173
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
    |||||| |||||||||| ||||||| |||||||||||| || |||||||||||||||||||||    
T  10986235 aatttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgca 10986173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 24512898 - 24512787
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc-aaatcagttcctaagttct 244  Q
    ||||||||||||||||||| ||||| |||||| ||||| || |||||| |||||||| ||||  ||| | || ||||||| ||||| ||||||| | |||    
T  24512898 aattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgc--agaaagattgcacagcaaaatcggttcctaggctct 24512801  T
Q  245 tctctcttggtctt 258  Q
    ||||||||| ||||    
T  24512800 tctctcttgttctt 24512787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 24641696 - 24641607
Alignment:
Q  188 cacccttaccttagaattgcaaagacaaatag--cacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||||||||||||| |||||||| |   |||||||| ||  |||   ||||||||||||||||||||||||||||||||| ||||    
T  24641696 cacccttaccttagaattgcgaagacaaagaaaacacagcaa-tcgattctctagttcttctctcttggtcttctctccttgccttagctt 24641607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 29614201 - 29614146
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  29614201 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 29614146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 4477858 - 4477912
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  4477858 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 23839199 - 23839253
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  23839199 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 12168366 - 12168418
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  12168366 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 12168418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 19287275 - 19287327
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  19287275 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 19287327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 19785921 - 19785869
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  19785921 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 19785869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 19878459 - 19878511
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  19878459 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 19878511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 930150 - 930095
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||| |||| ||||||| |||||| ||||| || ||||||||||||||    
T  930150 aattttcagaaactatagattatgattattgagagatagtctcacccttaccttag 930095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 18800438 - 18800493
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||| ||||    
T  18800438 aattttcagaaattatagattatgattattgagagatagtctcacccttacattag 18800493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  148 ttttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    |||||||||||||| ||||| || |||||| ||||| || |||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 19884235 - 19884287
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||| |||||| ||||| || |||||| |||||||    
T  19884235 tttcagaaattatagattatgattattgagagatagtctcaccctaaccttag 19884287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 135304 - 135568
Alignment:
Q  11 atcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttatt 110  Q
    ||||||||||| ||||||||||||||||||| ||||||| |||||||  | |||||||||||||| |||||||||||||||||||||||||||||||| |    
T  135304 atcaacaacatagattaagaaatcatactaa-catcaaattacaacacaataaacctgattcttacaccttttctttcaaaatcatcattaacccttaat 135402  T
Q  111 ttcccaattttacctt-aagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  135403 t-ctcaattttacctttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatctcacgcttaccttagaattgcaa 135501  T
Q  210 agacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  135502 agacaaatagcacagcaaatcagttcctaagctcttctctcttggtcttctctccttgccttagctt 135568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 25181121 - 25180880
Alignment:
Q  9 acatcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaaccctta 108  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||| | || |||||||||   |||||||||||||||||||||||| |||||||| |    
T  25181121 acatcaacaacatagattaagaaatcatactaaacatcaaagtacaaaaatataaacctgatcaatataccttttctttcaaaatcatccttaaccctaa 25181022  T
Q  109 ttttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25181021 atttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 25180922  T
Q  209 aagacaaatagcacagcaaatcagttcctaagttcttctctc 250  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  25180921 aagacaaaaagcacagcaaatcagttcctaagttcttctctc 25180880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 10441 - 10679
Alignment:
Q  10 catcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttat 109  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||| || |||||| || | |||||||||||||||||||||||| |||||||| |     
T  10441 catcaacaacatagattaagaaatcatactaaacatcaaagtacaacaatataaaccttatccctataccttttctttcaaaatcatccttaaccctaaa 10540  T
Q  110 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10541 tttcccaattttaccttaagaacaattcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaatttcaa 10640  T
Q  210 agacaaatagcacagcaaatcagttcctaagttcttctc 248  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  10641 agacaaaaagcacagcaaatcagttcctaagtccttctc 10679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 142 - 276
Target Start/End: Complemental strand, 27207778 - 27207644
Alignment:
Q  142 gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagt 241  Q
    ||||||||||||||||||||| ||||  |  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  27207778 gattaattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatccgttcctaagt 27207679  T
Q  242 tcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||||||||||||||||||||||| ||||    
T  27207678 tcttctctcttggtcttctctccttgccttagctt 27207644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 26885179 - 26885312
Alignment:
Q  142 gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagt 241  Q
    ||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||||    
T  26885179 gattaattttcagaaattatacatta-gattattgaaagataatcccacccttaccttagaattgcagagacaaaaagcacatcaaatccgttcctaagt 26885277  T
Q  242 tcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||||||| ||||||||||||||| ||||    
T  26885278 tcttctctcttggttttctctccttgccttagctt 26885312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 23168480 - 23168224
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcatta-acccttattttcccaatttt 121  Q
    ||||||||||||||||| | ||||||| |||||||    |||| ||| ||||| ||||||||||||||||||| ||| | ||||| ||| ||  ||||||    
T  23168480 gattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaaatcagcatcataccctaattctc--aatttt 23168383  T
Q  122 ---accttaagaacagttcaatt-gattaatttt-cagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 216  Q
       | ||| | |||  ||| ||| |||||||||| ||||||||||| |||||||  | |||||||||||||||||||||||||||||||||| | |||||    
T  23168382 tttatcttcaaaactattctattagattaatttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaaacaaa 23168283  T
Q  217 tagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
     ||||||||||| | || ||||||||||||||||||||||||||||||||||||| ||||    
T  23168282 -agcacagcaaaaccgtccctaagttcttctctcttggtcttctctccttgccttagctt 23168224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 23579737 - 23579481
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcatta-acccttattttcccaatttt 121  Q
    ||||||||||||||||| | ||||||| |||||||    |||| ||| ||||| ||||||||||||||||||| ||| | ||||| ||| ||  ||||||    
T  23579737 gattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaaatcagcatcataccctaattctc--aatttt 23579640  T
Q  122 ---accttaagaacagttcaatt-gattaatttt-cagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 216  Q
       | ||| | |||  ||| ||| |||||||||| ||||||||||| |||||||  | |||||||||||||||||||||||||||||||||| | |||||    
T  23579639 tttatcttcaaaactattctattagattaatttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaaacaaa 23579540  T
Q  217 tagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
     ||||||||||| | || ||||||||||||||||||||||||||||||||||||| ||||    
T  23579539 -agcacagcaaaaccgtccctaagttcttctctcttggtcttctctccttgccttagctt 23579481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 27366566 - 27366472
Alignment:
Q  183 aatcccacccttaccttagaattgcaaagacaaatag--cacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    |||| ||||||||||||||||||||||||||||| |   |||||||| ||  ||||  ||||||||||||||||||||||||||||||||| ||||    
T  27366566 aatctcacccttaccttagaattgcaaagacaaagaaaacacagcaa-tcgattccctagttcttctctcttggtcttctctccttgccttagctt 27366472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 5706075 - 5705947
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttcttc 246  Q
    |||||| ||||||| ||||||| || ||| ||||| || |||||||||||||||||||| |||||||  | | |||||| ||||  |||   ||||||||    
T  5706075 tttcaggaattatagattatgattaatgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttcttc 5705977  T
Q  247 tctcttggtcttctctccttgcctttgctt 276  Q
    ||||||||||||||||||| ||||| ||||    
T  5705976 tctcttggtcttctctcctagccttagctt 5705947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 200
Target Start/End: Original strand, 23265058 - 23265197
Alignment:
Q  62 aaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt-aagaacagttcaatt-gattaattttcagaaatt 159  Q
    |||| ||||||||| ||| || |||||||||||| ||| |||||| ||| ||  | |||||  || ||||||| ||||||| ||| ||||||||||||||    
T  23265058 aaacatgattcttacaccattcctttcaaaatcagcatcaaccctaattctca-atttttattttcaagaacaattcaattagatcaattttcagaaatt 23265156  T
Q  160 atatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||| ||||| |||||| ||||| || |||||||||||||    
T  23265157 atatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 200
Target Start/End: Original strand, 23280126 - 23280265
Alignment:
Q  62 aaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt-aagaacagttcaatt-gattaattttcagaaatt 159  Q
    |||| ||||||||| ||| || |||||||||||| ||| |||||| ||| ||  | |||||  || ||||||| ||||||| ||| ||||||||||||||    
T  23280126 aaacatgattcttacaccattcctttcaaaatcagcatcaaccctaattctca-atttttattttcaagaacaattcaattagatcaattttcagaaatt 23280224  T
Q  160 atatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||| ||||| |||||| ||||| || |||||||||||||    
T  23280225 atatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 6483718 - 6483772
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  6483718 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 6487185 - 6487239
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  6487185 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 21908360 - 21908414
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    |||||||||||||||||||| |||| |||||| ||||| || |||||||||||||    
T  21908360 aattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 26583830 - 26583882
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  26583830 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 26583882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 16147020 - 16146791
Alignment:
Q  11 atcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttatt 110  Q
    |||||||||||||||||||||||||||||||||||  || |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16147020 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttatt 16146921  T
Q  111 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 210  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16146920 ttccaaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 16146821  T
Q  211 gacaaatagcacagc-aaatcagttcctaa 239  Q
    ||||||||||||||| ||||||||||||||    
T  16146820 gacaaatagcacagcaaaatcagttcctaa 16146791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 23 - 208
Target Start/End: Original strand, 27906142 - 27906328
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcatta-acccttattttcccaatttt 121  Q
    ||||||||||||||||  | ||||||| |||||||    |||| ||||||||| ||||||||||||||||||| ||| | ||||| ||| ||  ||||||    
T  27906142 gattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccttttctttcaaaatcaacatcacaccctaattctc--aatttt 27906239  T
Q  122 acctt-aagaacagttcaattg-attaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
    | ||| ||||||  ||| |||  |||||||||||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||    
T  27906240 atcttcaagaactattctattatattaattttcagaaattatacattatgatcattgaaagataatcccacccttatcttagaattgca 27906328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 14486601 - 14486713
Alignment:
Q  87 tcaaaatcatcattaacccttattttcccaattttacctt-aagaacagttcaatt-gattaattttcagaaattatatattatgactattgaaagataa 184  Q
    ||||||||||||| |||||| || |||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||  |||||| ||||     
T  14486601 tcaaaatcatcatcaaccct-atattcccaattttatcttcaagaacaattcaattcgattaattttcagaaattatatattatgatcattgaaggatag 14486699  T
Q  185 tcccacccttacct 198  Q
    || |||||||||||    
T  14486700 tctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 53483708 - 53483836
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttcttc 246  Q
    |||||| ||||||| ||||||| |||||| ||||| || |||||||||||||||||||| |||||||  | | |||||| ||||  |||   ||||||||    
T  53483708 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttcttc 53483806  T
Q  247 tctcttggtcttctctccttgcctttgctt 276  Q
    ||||||||||||||||||| ||||| ||||    
T  53483807 tctcttggtcttctctcctagccttagctt 53483836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 15408140 - 15408196
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttaga 202  Q
    ||||||||||||||||||| ||||| |||||| ||||| || |||||||||||||||    
T  15408140 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttaga 15408196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 11848114 - 11848169
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  11848114 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 11848169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 8045884 - 8045832
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  8045884 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 8045832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 62 - 276
Target Start/End: Complemental strand, 2051 - 1837
Alignment:
Q  62 aaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt-aagaacagttcaattgattaattttcagaaatta 160  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  2051 aaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-cccaattttactttcaagaacagttcaattgattaattttcagaaatta 1953  T
Q  161 tatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttct 260  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  1952 tatattatgactattgaaagataatcccacccttaccttacaattgcaaagacaaaaagcacagcaaatccgttcctaagttcttctctcttggtcttct 1853  T
Q  261 ctccttgcctttgctt 276  Q
    ||||||||||| ||||    
T  1852 ctccttgccttagctt 1837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 9201 - 9434
Alignment:
Q  11 atcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttatt 110  Q
    ||||||||||| |||| |||||||||||||| ||||||| |||||||  | |||||| ||||||| |||||||||||||||||||||||||||||||| |    
T  9201 atcaacaacatagattgagaaatcatactaaacatcaaattacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaat 9300  T
Q  111 ttcccaattttacctt-aagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 209  Q
    | ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  9301 t-cccaattttacttttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgtag 9399  T
Q  210 agacaaatagcacagcaaatcag-ttcctaagttct 244  Q
    ||||| | | |||||||| |||| ||||||||||||    
T  9400 agacagaga-cacagcaattcagtttcctaagttct 9434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 36 - 276
Target Start/End: Original strand, 889 - 1126
Alignment:
Q  36 tactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttaccttaagaacagt 135  Q
    ||||||||||||||  ||||| ||| |||||| | ||||| || ||||||| |||||||  |||||||||| ||||||||||||||||| ||||||||||    
T  889 tactaatcatcaaac-acaactttataaacctaaatcttacacattttctt-caaaatcgccattaaccctaattttcccaattttaccataagaacagt 986  T
Q  136 tcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttc 235  Q
    | ||||| ||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  987 taaattgcttaattttcagaaatcatatattatcactattgagagatgatcccacccttaccttagaattgcaaagacaaa-agcacagcaaatcaattc 1085  T
Q  236 ctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||| |||||||||||||||||||||||||||||||| ||||    
T  1086 ctaggttcttctctcttggtcttctctccttgccttagctt 1126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 62 - 271
Target Start/End: Original strand, 10156 - 10364
Alignment:
Q  62 aaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttac-cttaagaacagttcaattgattaattttcagaaatta 160  Q
    |||| ||||||||| ||| |  |||||||||| | ||| |||||| |||  ||||||||||  || | ||||| ||||||||||||||||||||||||||    
T  10156 aaacatgattcttacaccatccctttcaaaattagcatcaaccctaatt--cccaattttattctcatgaacaattcaattgattaattttcagaaatta 10253  T
Q  161 tatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttct 260  Q
     ||||||||| ||||| ||||||||| ||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  10254 catattatgattattggaagataatctcacccttaccttagaattgtagagacaaaaagcacagcaaatccgttcctaagttcttctctcttggtcttct 10353  T
Q  261 ctccttgcctt 271  Q
    |||||||||||    
T  10354 ctccttgcctt 10364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 67 - 276
Target Start/End: Complemental strand, 493162 - 492953
Alignment:
Q  67 tgattcttataccttttctttcaaaatcatcatta-acccttattttcccaattttacctt-aagaacagttcaatt-gattaattttcagaaattatat 163  Q
    ||||||||| ||||||||||||||||||| ||||| ||||| ||| ||   |||||| ||  ||||||  ||| ||| |||||||||||||||||||||     
T  493162 tgattcttacaccttttctttcaaaatcagcattataccctaattctct--attttatctccaagaactattccattagattaattttcagaaattatac 493065  T
Q  164 attatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctc 263  Q
    |||| || ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  493064 atta-gattattgaaagataatctcacccttaccttagaattgcagagacaaaaagcacagcaaatccgttcctaagttcttctctcttggtcttctctc 492966  T
Q  264 cttgcctttgctt 276  Q
    |||||||| ||||    
T  492965 cttgccttagctt 492953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 1234 - 1425
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaatttta 122  Q
    ||||| ||||||||||||||||||||  || ||||||  |||||||| |||||  | ||||||| ||||||||||||||  ||| |||||||||||||||    
T  1234 gattaggaaatcatactaatcatcaat-tataacattgtaaacctgaatcttacgcattttctt-caaaatcatcattagacctaattttcccaatttta 1331  T
Q  123 ccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 216  Q
    |||||||||||||| ||||| ||||||||||||||  ||||||||  |||||||||||  ||||||||||||||||||||||||||||||||||    
T  1332 ccttaagaacagttaaattgtttaattttcagaaagcatatattaacactattgaaaggaaatcccacccttaccttagaattgcaaagacaaa 1425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 10250 - 10125
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttctt 245  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||    
T  10250 aattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttctt 10151  T
Q  246 ctctcttggtcttctctccttgcctt 271  Q
    ||||||||||||||||||||||||||    
T  10150 ctctcttggtcttctctccttgcctt 10125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 11111 - 11042
Alignment:
Q  173 attgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagtt 242  Q
    |||||| ||||||||||||||||||||||||||  |   | || || ||||||||||||| |||||||||    
T  11111 attgaaggataatcccacccttaccttagaattttaggaagaattaacacagcaaatcagctcctaagtt 11042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 1580 - 1455
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttctt 245  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||    
T  1580 aattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttctt 1481  T
Q  246 ctctcttggtcttctctccttgcctt 271  Q
    ||||||||||||||||||||||||||    
T  1480 ctctcttggtcttctctccttgcctt 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 16233 - 16023
Alignment:
Q  30 aaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttaccttaag 129  Q
    |||||||||||||||||||| |||||||| |  ||||||||||||  || ||||||| ||||||||||||||||||| | || || | ||||| |||||     
T  16233 aaatcatactaatcatcaaa-tacaacatcatgaacctgattcttgcacattttctt-caaaatcatcattaaccctaaatt-ccaatttttatcttaaa 16137  T
Q  130 aacagttcaattgattaatttt-cagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaa 228  Q
    ||||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |   | || || |||||||||    
T  16136 aacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgtaggaagaattaacacagcaaa 16037  T
Q  229 tcagttcctaagtt 242  Q
    |||| |||||||||    
T  16036 tcagctcctaagtt 16023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 6035 - 5781
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcatta-acccttattttcccaatttt 121  Q
    ||||||||||||||||  | ||||||| ||||||||   |||| | ||||||| |||||| |||||||||||| | | | ||||| ||| ||  ||||||    
T  6035 gattaagaaatcatacataacatcaaattacaacatgttaaacataattcttacaccttt-ctttcaaaatcagcctcataccctaattctc--aatttt 5939  T
Q  122 acctt-aagaacagttcaatt-gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--at 217  Q
    | ||| ||||||  ||||||| ||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||  |     
T  5938 atcttcaagaactattcaattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaa 5839  T
Q  218 agcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 276  Q
    | |||||| |||| |||||  ||||||||||||||||||||||||||||||||| ||||    
T  5838 aacacagc-aatcggttccctagttcttctctcttggtcttctctccttgccttagctt 5781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 91374 - 91144
Alignment:
Q  29 gaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaatttt---acct 125  Q
    ||||||||| ||||||||||| |||||||||| |||||| | ||||| || ||||||| ||||||   |||||||||| |||| |||||||||   |||     
T  91374 gaaatcatattaatcatcaaa-tacaacattataaacctaaatcttacacattttctt-caaaattgccattaaccctaattt-cccaatttttttacca 91278  T
Q  126 taagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc 225  Q
    ||| ||||||| ||||| ||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||  ||  ||||    
T  91277 taaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttaccttagaattgcaaagataa--agtgcagc 91180  T
Q  226 aaatcagttcctaagttcttctctcttggtcttctc 261  Q
    ||| || || ||||| ||||||||||||||||||||    
T  91179 aaaccaatttctaagctcttctctcttggtcttctc 91144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 97100 - 96870
Alignment:
Q  29 gaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaatttt---acct 125  Q
    ||||||||| ||||||||||| |||||||||| |||||| | ||||| || ||||||| ||||||   |||||||||| |||| |||||||||   |||     
T  97100 gaaatcatattaatcatcaaa-tacaacattataaacctaaatcttacacattttctt-caaaattgccattaaccctaattt-cccaatttttttacca 97004  T
Q  126 taagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc 225  Q
    ||| ||||||| ||||| ||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||  ||  ||||    
T  97003 taaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttaccttagaattgcaaagataa--agtgcagc 96906  T
Q  226 aaatcagttcctaagttcttctctcttggtcttctc 261  Q
    ||| || || ||||| ||||||||||||||||||||    
T  96905 aaaccaatttctaagctcttctctcttggtcttctc 96870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 111885 - 111938
Alignment:
Q  148 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  111885 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 142 - 276
Target Start/End: Complemental strand, 3461 - 3327
Alignment:
Q  142 gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagt 241  Q
    ||||||||||||||||||||||||||     |||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  3461 gattaattttcagaaattatatattaaattcattgaaagataatatcacccttaccttagaattgcaaagacaaaaagcacggcaaatccgttcctaagt 3362  T
Q  242 tcttctctcttggtcttctctccttgcctttgctt 276  Q
    ||| |||||||||||||||||| ||||||| ||||    
T  3361 tctcctctcttggtcttctctcgttgccttagctt 3327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 148 - 270
Target Start/End: Original strand, 6 - 125
Alignment:
Q  148 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttct 247  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||  ||  |||||| ||| |||||||| ||||||    
T  6 ttttcagaaatcatatattagaactattgaaagataatcccacccttaccttagaattgcaaagataa--agtgcagcaagtcaattcctaagctcttct 103  T
Q  248 ctcttggtcttctctccttgcct 270  Q
    |||||||||||||| ||||||||    
T  104 ctcttggtcttctc-ccttgcct 125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 23748 - 23562
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcatta-acccttattttcccaatttt 121  Q
    ||||||||||||||||| | ||||||| |||||||    |||| ||||||||| | ||||||||||||||||| ||| | ||||| ||| ||  ||||||    
T  23748 gattaagaaatcatactgaacatcaaattacaacacattaaacatgattcttacatcttttctttcaaaatcagcatcacaccctaattctc--aatttt 23651  T
Q  122 acctt-aagaacagttcaatt-gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgca 208  Q
      ||| ||||||  |||  || ||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||    
T  23650 gtcttcaagaactattcttttagattaattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgca 23562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 276
Target Start/End: Original strand, 111686 - 111817
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttc 243  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||||||||| |||||||  | | |||||| ||||  |||   |||||    
T  111686 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttc 111784  T
Q  244 ttctctcttggtcttctctccttgcctttgctt 276  Q
    |||||||||||||||||||||||||||| ||||    
T  111785 ttctctcttggtcttctctccttgccttagctt 111817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 11905 - 11850
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  11905 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 11850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 13947 - 13879
Alignment:
Q  148 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 216  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  13947 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 13879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 40725 - 40475
Alignment:
Q  9 acatcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaaccctta 108  Q
    |||||||||  || |||||||||||||| || | ||||||| |||||||    |||| |||| |||| ||| || |||||||||||| ||| |||||| |    
T  40725 acatcaacattatagattaagaaatcattctgaacatcaaattacaacacgttaaacatgatccttacaccattcctttcaaaatcagcatcaaccctaa 40626  T
Q  109 ttttcccaattttaccttaagaacagttcaattgatta--attttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 206  Q
    ||| || | ||||| || ||||||| ||||  | |  |  |||||||||||||||||| ||||| |||||| ||||| || ||||||||||||||| |||    
T  40625 tttcccaatttttatctcaagaacaattcatgttaaaacaattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttg 40526  T
Q  207 caaagacaaatagcacagc-aaatcagttcctaagttcttctctcttggtctt 258  Q
    |  ||| | || ||||||| ||||| ||||||| | |||||||||||| ||||    
T  40525 c--agaaagattgcacagcaaaatcggttcctaggctcttctctcttgttctt 40475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 73161 - 73365
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcatta-acccttattttcccaatttt 121  Q
    ||||||||||||||||  | ||||||| |||||||    |||| ||||||||| ||| ||||||||||||||| ||| | ||||| ||| ||  ||||||    
T  73161 gattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccgtttctttcaaaatcaacatcacaccctaattctc--aatttt 73258  T
Q  122 acctt-aagaacagttcaatt-gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatag 219  Q
    | ||| |||| |  | | ||| |||||||||||| |||||||| |||||||  |||||||||||||||||||||||||| | ||||||    | ||||||    
T  73259 atcttcaagagctatcctattagattaattttcataaattatacattatgatcattgaaagataatcccacccttacctcataattgc----agaaatag 73354  T
Q  220 cacagcaaatc 230  Q
    |||||||||||    
T  73355 cacagcaaatc 73365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 10609 - 10546
Alignment:
Q  142 gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaatt 205  Q
    ||||||||||||||||||||| |||| ||  |||||||||||||||||| ||||||||||||||    
T  10609 gattaattttcagaaattatacattaagatcattgaaagataatcccacacttaccttagaatt 10546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 200
Target Start/End: Original strand, 16736 - 16875
Alignment:
Q  62 aaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt--aagaacagttcaatt-gattaattttcagaaat 158  Q
    |||| ||||||||| ||| || |||||||||||| ||| |||||| |||  |||||||||   ||  ||||||| ||||||| ||| |||||||||||||    
T  16736 aaacatgattcttaaaccattcctttcaaaatcagcatcaaccctaatt--cccaatttttattttcaagaacaattcaattagatcaattttcagaaat 16833  T
Q  159 tatatattatgactattgaaagataatcccacccttacctta 200  Q
    |||||| ||||| |||||| ||||| || |||||||||||||    
T  16834 tatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 45326 - 45198
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttcttc 246  Q
    |||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||| |||| |||||||  | | |||||| ||||  |||   ||||||||    
T  45326 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagatttgcgaagacaaagaaaacacagc-aatcgattctctagttcttc 45228  T
Q  247 tctcttggtcttctctccttgcctttgctt 276  Q
    ||||||||||||||||||| ||||| ||||    
T  45227 tctcttggtcttctctcctagccttagctt 45198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 135349 - 135530
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaatttta 122  Q
    |||||||||||||| || | ||||||| |||||||    |||| |||| |||| ||| || |||||||||||| ||| |||||| |||| || | |||||    
T  135349 gattaagaaatcattctgaacatcaaattacaacacattaaacatgatccttacaccattcctttcaaaatcagcatcaaccctaatttcccaattttta 135448  T
Q  123 ccttaagaacagttcaattgatta--attttcagaaattatatattatgactattgaaagataatcccacccttaccttaga 202  Q
     || ||||||| ||||  | |  |  |||||||||||||||||| ||||| |||||| ||||| || |||||||||||||||    
T  135449 tctcaagaacaattcatgttaaaacaattttcagaaattatatactatgattattgagagatagtctcacccttaccttaga 135530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 717 - 770
Alignment:
Q  148 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  717 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttag 770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 22646 - 22536
Alignment:
Q  147 attttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc-aaatcagttcctaagttctt 245  Q
    |||||||||||||||||| ||||| |||||| ||||| || |||||||||||| || ||||  ||| | || ||||||| ||||| ||||||| | ||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgc--agaaatattgcacagcaaaatcggttcctaggctctt 22549  T
Q  246 ctctcttggtctt 258  Q
    |||||||||||||    
T  22548 ctctcttggtctt 22536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 12833 - 13019
Alignment:
Q  23 gattaagaaatcatactaatcatcaaagtacaacattaaaaacct-gattcttataccttttctttcaaaatcat-cattaacccttattttccc--aat 118  Q
    ||||| |||||||||||||||||  || |||||||||| |||||| ||||||||   | |||| |||| |||||| |||||||||| | ||||||  | |    
T  12833 gattaggaaatcatactaatcatacaaatacaacattataaacctagattcttaacacatttccttcagaatcatacattaaccctaaatttccccaatt 12932  T
Q  119 tttacc-ttaagaacagttcaa---ttgattaa-ttttcagaaattatatattatgactattg-aaagataatcccacccttacctt 199  Q
    |||||| |||||||||||| ||   | |||||| |||| |||||| ||||||||  ||||||| |||||||||||||||||||||||    
T  12933 tttacctttaagaacagttaaaatttagattaattttttagaaatcatatattagaactattgtaaagataatcccacccttacctt 13019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 200
Target Start/End: Original strand, 13548 - 13687
Alignment:
Q  62 aaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt--aagaacagttcaatt-gattaattttcagaaat 158  Q
    |||| ||||||||| ||| || |||||||||||| ||| |||||| |||  |||||||||   ||  ||||||| ||||||| ||| |||||||||||||    
T  13548 aaacatgattcttacaccattcctttcaaaatcagcatcaaccctaatt--cccaatttttattttcaagaacaattcaattagatcaattttcagaaat 13645  T
Q  159 tatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||| ||||| || |||||| ||||| || |||||||||||||    
T  13646 tatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 116877 - 116951
Alignment:
Q  127 aagaacagttcaatt-gattaattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||| ||||||| ||| ||||||||||||||||||| ||||| |||||| ||||| || |||||||||||||    
T  116877 aagaacaattcaattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 805 - 750
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  805 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 750  T

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Target: scaffold0461 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 147 - 8
Alignment:
Q  62 aaacctgattcttataccttttctttcaaaatcatcattaacccttattttcccaattttacctt--aagaacagttcaatt-gattaattttcagaaat 158  Q
    |||| ||||||||| ||| || |||||||||||| ||  |||||| |||  |||||||||   ||  ||||||| ||||||| ||| |||||||||||||    
T  147 aaacatgattcttacaccattcctttcaaaatcagcaacaaccctaatt--cccaatttttattttcaagaacaattcaattagatcaattttcagaaat 50  T
Q  159 tatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||| ||||| || |||||| ||||| || |||||||||||||    
T  49 tatgtattaagattattgagagatagtctcacccttacctta 8  T

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Target: scaffold0247 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 11342 - 11397
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  11342 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 11397  T

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Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 30858 - 30913
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  30858 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 30913  T

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Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 102002 - 101928
Alignment:
Q  127 aagaacagttcaatt-gattaattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||| ||||||| ||| ||||||||| ||||||||| ||||| |||||| ||||| || |||||||||||||    
T  102002 aagaacaattcaattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

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Target: scaffold0310 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 17644 - 17700
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttaga 202  Q
    ||||||||||||||||| ||||||  |||||| ||||| || |||||||||||||||    
T  17644 aattttcagaaattatacattatggttattgagagatagtctcacccttaccttaga 17700  T

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Target: scaffold0025 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 14450 - 14398
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacct 198  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||    
T  14450 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

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Target: scaffold0456 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 932 - 987
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||| |||| ||||||| |||||| ||||| || ||||||||||||||    
T  932 aattttcagaaactatagattatgattattgagagatagtctcacccttaccttag 987  T

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Target: scaffold0456; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 8077 - 8132
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||| |||| ||||||| |||||| ||||| || ||||||||||||||    
T  8077 aattttcagaaactatagattatgattattgagagatagtctcacccttaccttag 8132  T

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Target: scaffold0090 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 18170 - 18225
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||| |||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  18170 aattttcaaaaattatagattatgattattgagagatagtctcacccttaccttag 18225  T

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Target: scaffold1461 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1461
Description:

Target: scaffold1461; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 1543 - 1485
Alignment:
Q  142 gattaattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||||  |||||| ||  |||| ||||||||| |||||||||||||    
T  1543 gattaattttcagaaattgcatattaagatcattgcaagataatctcacccttacctta 1485  T

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Target: scaffold0317 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 1387 - 1441
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    |||||||| ||||||||||| ||||  ||||||||||| || |||||||||||||    
T  1387 aattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

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Target: scaffold0124 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 34330 - 34276
Alignment:
Q  146 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 200  Q
    ||||||||||||||||||| ||||| ||| || ||||| || |||||||||||||    
T  34330 aattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

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Target: scaffold1773 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 1181 - 1242
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 210  Q
    |||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||  |||||||    
T  1181 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgcaaa 1242  T

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Target: scaffold0796 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 1784 - 1691
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagtt 242  Q
    |||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||  ||| |   | || || ||||||||||||| |||||||||    
T  1784 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgtaggaagaattaacacagcaaatcagctcctaagtt 1691  T

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Target: scaffold0796; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 5807 - 5714
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagtt 242  Q
    |||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||  ||| |   | || || ||||||||||||| |||||||||    
T  5807 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgtaggaagaattaacacagcaaatcagctcctaagtt 5714  T

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Target: scaffold0117 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 1950 - 1897
Alignment:
Q  148 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    ||||||||||||||| ||||||| |||||| | ||| || ||||||||||||||    
T  1950 ttttcagaaattatagattatgattattgagatatagtctcacccttaccttag 1897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 8627 - 8574
Alignment:
Q  148 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    ||||||||||||||| ||||||| |||||| | ||| || ||||||||||||||    
T  8627 ttttcagaaattatagattatgattattgagatatagtctcacccttaccttag 8574  T

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Target: scaffold0058 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 294 - 346
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||||||||||| ||||||  |||||| ||||| || ||||||||||||||    
T  294 tttcagaaattatagattatggttattgagagatagtctcacccttaccttag 346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 50182 - 50234
Alignment:
Q  149 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 201  Q
    |||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  50182 tttcaggaattatagattatgattattgagagatagtctcacccttaccttag 50234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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