View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140_low_6 (Length: 282)

Name: NF10140_low_6
Description: NF10140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140_low_6
NF10140_low_6
[»] chr4 (16 HSPs)
chr4 (41-267)||(46873653-46873879)
chr4 (134-233)||(46891255-46891355)
chr4 (1-40)||(10352914-10352953)
chr4 (1-40)||(1817815-1817854)
chr4 (1-40)||(3292926-3292965)
chr4 (1-40)||(42333806-42333845)
chr4 (1-40)||(43143614-43143653)
chr4 (1-41)||(44156748-44156788)
chr4 (1-41)||(50205107-50205147)
chr4 (174-233)||(18968310-18968369)
chr4 (1-40)||(29996013-29996052)
chr4 (1-40)||(48989426-48989465)
chr4 (1-39)||(28877280-28877318)
chr4 (41-91)||(46891067-46891117)
chr4 (204-233)||(35522102-35522131)
chr4 (1-41)||(36382376-36382416)
[»] chr3 (6 HSPs)
chr3 (1-41)||(19565531-19565571)
chr3 (1-40)||(6930924-6930963)
chr3 (1-40)||(45335972-45336011)
chr3 (1-40)||(11018242-11018281)
chr3 (1-40)||(45183079-45183118)
chr3 (1-50)||(33041042-33041090)
[»] chr6 (3 HSPs)
chr6 (1-40)||(29743381-29743420)
chr6 (1-40)||(28996828-28996867)
chr6 (1-40)||(18339204-18339243)
[»] chr7 (11 HSPs)
chr7 (1-40)||(26624844-26624883)
chr7 (1-40)||(34389086-34389125)
chr7 (1-40)||(36658279-36658318)
chr7 (1-40)||(38638266-38638305)
chr7 (1-39)||(35090267-35090305)
chr7 (1-41)||(40920033-40920073)
chr7 (1-40)||(37002174-37002213)
chr7 (1-40)||(43184498-43184537)
chr7 (1-41)||(7002822-7002862)
chr7 (1-41)||(7048693-7048733)
chr7 (174-222)||(28726955-28727003)
[»] chr5 (5 HSPs)
chr5 (1-40)||(12278890-12278929)
chr5 (1-40)||(33430419-33430458)
chr5 (1-40)||(37254739-37254778)
chr5 (1-40)||(17332581-17332620)
chr5 (1-40)||(31680465-31680504)
[»] chr1 (3 HSPs)
chr1 (1-40)||(17445411-17445450)
chr1 (1-39)||(35907651-35907689)
chr1 (188-233)||(26238437-26238482)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-41)||(53022-53062)
[»] chr2 (3 HSPs)
chr2 (4-40)||(771097-771133)
chr2 (1-40)||(12756867-12756906)
chr2 (1-40)||(45418681-45418720)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-40)||(5328-5367)
[»] chr8 (3 HSPs)
chr8 (1-40)||(4404106-4404145)
chr8 (1-40)||(23402206-23402245)
chr8 (1-40)||(34136855-34136894)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 41 - 267
Target Start/End: Original strand, 46873653 - 46873879
Alignment:
Q  41 tatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgactattatacgatgtggcatggcggacattgt 140  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873653 tatcaaatttcttccataattaagccgtggcatggtggactttgtgctagttggcatatgctactgtgactattatacgatgtggcatggcggacattgt 46873752  T
Q  141 gttgttaattgcggttcgcggaaaaatatgctagttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaatgactttt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873753 gttgttaattgcggttcgcggaaaaatatgctagttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaatgactttt 46873852  T
Q  241 cgcggggcattagcgagttgttcaaat 267  Q
    |||||||||||||||||||||||||||    
T  46873853 cgcggggcattagcgagttgttcaaat 46873879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 46891255 - 46891355
Alignment:
Q  134 acattgtgttgttaattgcggttcgcggaaaaatatgct-agttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaa 232  Q
    ||||||||||||||||||| ||| |||||| ||| || | ||||| || |  | |||| ||||||||| |||||||||||||||||||||||| ||||||    
T  46891255 acattgtgttgttaattgcagtttgcggaataatgtggttagttccaaatatgttctgtaatagtgctatagccgctatttcacaatattttgtactaaa 46891354  T
Q  233 t 233  Q
    |    
T  46891355 t 46891355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10352914 - 10352953
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10352914 aaattccgagacctatttgcgtgtaagaattttcagattg 10352953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1817854 - 1817815
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  1817854 aaattccgagacctatttgcgtgtaagaatttttagattg 1817815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3292926 - 3292965
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  3292926 aaattccgagacctatttgcgtgtgagaattttcagattg 3292965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42333806 - 42333845
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  42333806 aaattccgagacctatttgcgtgtgagaattttcagattg 42333845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43143614 - 43143653
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  43143614 aaattccgagacctatttgcgtgtgagaattttcagattg 43143653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 44156788 - 44156748
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattgt 41  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  44156788 aaattccgagacctatttgcgtgagagaattttcagattgt 44156748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 50205107 - 50205147
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattgt 41  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  50205107 aaattccaagacctatttgcgtgtgagaattttcagattgt 50205147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 18968369 - 18968310
Alignment:
Q  174 gttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaat 233  Q
    ||||||||| |||| |||||||||| | |||||||||||| |||| |||||| |||||||    
T  18968369 gttcaaattacgctatgcaatagtgttatagccgctatttgacaacattttgtactaaat 18968310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29996013 - 29996052
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  29996013 aaattccgagaactatttgcgtgcaagaattttcagattg 29996052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 48989465 - 48989426
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  48989465 aaattccgagacctatttgcgtatgagaattttcagattg 48989426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28877280 - 28877318
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagatt 39  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  28877280 aaattccgagacctatttgcgtgtgagaatttttagatt 28877318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 46891067 - 46891117
Alignment:
Q  41 tatcaaatttcttccataattaagccgtggcatggcggactttgtgctagt 91  Q
    |||||||||||| |||||| |  || |||||||||||||||||||||||||    
T  46891067 tatcaaatttctgccataaatgggctgtggcatggcggactttgtgctagt 46891117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 35522131 - 35522102
Alignment:
Q  204 gccgctatttcacaatattttgcactaaat 233  Q
    ||||||||||||||||||||||||||||||    
T  35522131 gccgctatttcacaatattttgcactaaat 35522102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36382376 - 36382416
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattgt 41  Q
    ||||||| |||||||||||||||| | ||||||||||||||    
T  36382376 aaattccaagacctatttgcgtgtgacaattttcagattgt 36382416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19565531 - 19565571
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattgt 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19565531 aaattccgagacctatttgcgtgtaagaattttcagattgt 19565571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6930924 - 6930963
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  6930924 aaattccgagacctatttgcgtgtgagaattttcagattg 6930963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45336011 - 45335972
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  45336011 aaattccaagacctatttgcgtgtaagaattttcagattg 45335972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11018242 - 11018281
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  11018242 aaattctgagacctatttgcgtgtgagaattttcagattg 11018281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45183118 - 45183079
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  45183118 aaattccgagacctatttgtgtgtgagaattttcagattg 45183079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33041090 - 33041042
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattgtatcaaattt 50  Q
    |||||||||||||||||||||||| | |||||||| ||||| ||||||||    
T  33041090 aaattccgagacctatttgcgtgtgaaaattttcaaattgt-tcaaattt 33041042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29743420 - 29743381
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29743420 aaattccgagacctatttgcgtgtaagaattttcagattg 29743381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28996867 - 28996828
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  28996867 aaattccgagacctatttgcgtgtgagaattttcagattg 28996828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18339243 - 18339204
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  18339243 aaattccgagacctatttgcatgtgagaattttcagattg 18339204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26624883 - 26624844
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  26624883 aaattccgagacctatttgcgtgtgagaattttcagattg 26624844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34389086 - 34389125
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  34389086 aaattccgagacctatttgcgtgtgagaattttcagattg 34389125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 36658318 - 36658279
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  36658318 aaattccgagacctatttgcgtgtgagaattttcagattg 36658279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38638266 - 38638305
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  38638266 aaattccgagacctatttgcgtgtgagaattttcagattg 38638305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35090305 - 35090267
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagatt 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  35090305 aaattccgagacctatttgcgtgtgagaattttcagatt 35090267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40920033 - 40920073
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattgt 41  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  40920033 aaattccgagacctatttgcatgtgagaattttcagattgt 40920073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 37002174 - 37002213
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  37002174 aaattccaagacctatttgcgtgtgagaattttcagattg 37002213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43184498 - 43184537
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  43184498 aaattcagagacctatttgcgtgtgagaattttcagattg 43184537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7002862 - 7002822
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattgt 41  Q
    |||||||| ||||||||||||||| |||||||| |||||||    
T  7002862 aaattccgtgacctatttgcgtgtgagaatttttagattgt 7002822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7048733 - 7048693
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattgt 41  Q
    |||||||| ||||||||||||||| |||||||| |||||||    
T  7048733 aaattccgtgacctatttgcgtgtgagaatttttagattgt 7048693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 28727003 - 28726955
Alignment:
Q  174 gttcaaattccgctctgcaatagtgctttagccgctatttcacaatatt 222  Q
    |||||||||||||| ||||| |||||  ||||| |||||||||||||||    
T  28727003 gttcaaattccgctatgcaacagtgccatagccactatttcacaatatt 28726955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 12278890 - 12278929
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  12278890 aaattccgagacctatttgcgtgtgagaattttcagattg 12278929  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33430458 - 33430419
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  33430458 aaattccgagacctatttgcgtgtgagaattttcagattg 33430419  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 37254778 - 37254739
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  37254778 aaattccgagacctatttgcgtgtgagaattttcagattg 37254739  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 17332581 - 17332620
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  17332581 aaattccgagacctatttgcgtgtgaaaattttcagattg 17332620  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31680504 - 31680465
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  31680504 aaattccgagacctatttgcatgtgagaattttcagattg 31680465  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 17445450 - 17445411
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  17445450 aaattccgagacctatttgcgtgtgagaattttcagattg 17445411  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35907689 - 35907651
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagatt 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  35907689 aaattccgagacctatttgcgtgtgagaattttcagatt 35907651  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 26238437 - 26238482
Alignment:
Q  188 ctgcaatagtgctttagccgctatttcacaatattttgcactaaat 233  Q
    ||||||||||||| ||||||||||||  |||||||||| |||||||    
T  26238437 ctgcaatagtgctatagccgctatttggcaatattttgtactaaat 26238482  T

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Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 53062 - 53022
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattgt 41  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  53062 aaattccgagacctatttgcatgtgagaattttcagattgt 53022  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 771133 - 771097
Alignment:
Q  4 ttccgagacctatttgcgtgtaagaattttcagattg 40  Q
    ||||||||||||||||||||| |||||||||||||||    
T  771133 ttccgagacctatttgcgtgtgagaattttcagattg 771097  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 12756867 - 12756906
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  12756867 aaattccgagacttatttgcgtgtgagaattttcagattg 12756906  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45418720 - 45418681
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  45418720 aaattcagagacctatttgcgtgtgagaattttcagattg 45418681  T

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Target: scaffold0502 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5367 - 5328
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  5367 aaattccgagacctatttgcatgtgagaattttcagattg 5328  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4404145 - 4404106
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  4404145 aaattccgagacctatttgcgtgtgagaatttttagattg 4404106  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23402245 - 23402206
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  23402245 aaatttcgagacctatttgcgtgtgagaattttcagattg 23402206  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34136855 - 34136894
Alignment:
Q  1 aaattccgagacctatttgcgtgtaagaattttcagattg 40  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  34136855 aaatttcgagacctatttgcgtgtgagaattttcagattg 34136894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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