View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140_low_9 (Length: 250)
Name: NF10140_low_9
Description: NF10140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 22618001 - 22618220
Alignment:
| Q |
8 |
acccacttaatcactgccaacgtcatctgattaagagggaatgatgctgagtcattaaaaactgaactaaatggataaaaatgcccttattcaggcacca |
107 |
Q |
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| T |
22618001 |
acccacctaatcactgtca-cgtcatctgattaagagggaatgatgctgagtcattaaaaactgaactaaatggataaaaa------------ggcacca |
22618087 |
T |
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| Q |
108 |
aaatgaccaaattaccttcaaattttgtagtttatataactgcattatctataaatcagaatatttggaataataaatttgataacaaatttat-ccaat |
206 |
Q |
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| T |
22618088 |
aaatgaccaaattacctacaaattttgtagtttatataactgcattatctataaatcagaatatttggaataataaatttgataacaaatttataccaat |
22618187 |
T |
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| Q |
207 |
ggattttgagtagctaagtcagcaactgtctct |
239 |
Q |
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| T |
22618188 |
ggattttgagtagctgagtcagcaactgtctct |
22618220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 11435985 - 11435866
Alignment:
| Q |
3 |
cctttacccacttaatcactgccaacgtcatctgattaagagggaatgatgctgagtcattaaaaactgaactaaatggataaaaatgcccttattcagg |
102 |
Q |
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| T |
11435985 |
ccttgacccacttaatcattgcca-cgtcatctgattaagagggaatgatgctgagtcattaaaaactaaactgaatggacaaaaatgcccttattcagg |
11435887 |
T |
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| Q |
103 |
caccaaaatgaccaaattacc |
123 |
Q |
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| T |
11435886 |
caccaaaatgaccaaattacc |
11435866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 17886806 - 17886688
Alignment:
| Q |
3 |
cctttacccacttaatcactgccaacgtcatctgattaagagggaatgatgctgagtcattaaaaactgaactaaatggataaaaatgcccttattcagg |
102 |
Q |
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| T |
17886806 |
ccttgacccacttaatcactgcca-cgtcaactgataaagagggaatgatgctgagtcattaaaaattgaactgaatggacaaaaatgaccttattcagg |
17886708 |
T |
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| Q |
103 |
caccaaaatgaccaaattacc |
123 |
Q |
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| T |
17886707 |
caccaaaatga-caaattacc |
17886688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 32927399 - 32927461
Alignment:
| Q |
34 |
ctgattaagagggaatgatgctgagtcattaaaaactgaactaaatggataaaaatgccctta |
96 |
Q |
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| T |
32927399 |
ctgattaagaggtaatgatgttgagtcattaaaagctatactgaatggacaaaaatgccctta |
32927461 |
T |
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