View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10141_high_3 (Length: 250)
Name: NF10141_high_3
Description: NF10141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10141_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 21103665 - 21103906
Alignment:
| Q |
1 |
tcgtgatttggataaagatcgagtgtaattgctgctaaatcgtaaccatttagtgaaacaacactatttgtatgaatttgactgttgttgggccatattt |
100 |
Q |
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| T |
21103665 |
tcgtgatttggataaagatcgagtgtaattgctgctaaatcgtaaccatttagtgaaacaacactatttgtatgaatttgactgttgttgggccatattt |
21103764 |
T |
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| Q |
101 |
acttgagtcatattaattacctaatcttaaactttaaagcaaaaagtaaaagagttaaaataaataattttgcattctattgaataagtggttcatcaaa |
200 |
Q |
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| T |
21103765 |
acttgagtcatattaattacctaatcttaaactttaaagcaaaaagtaaaagagttaaaataaataattttgcattgtattgaataagtggttcatcaaa |
21103864 |
T |
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| Q |
201 |
ttaattacatacagtcttgttactattttatctctctgtgct |
242 |
Q |
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| T |
21103865 |
ttaattacatacattcttgttactattgtctctctgtgtgct |
21103906 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 35749738 - 35749817
Alignment:
| Q |
155 |
ttaaaataaataattttgcattctattgaataagtggttcatcaaattaattacatacagtcttgttactattttatctc |
234 |
Q |
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| T |
35749738 |
ttaaaagagataaatttgcattggattgagtaaatggttcatcaaatcaattacatacattcttgatactcttttctctc |
35749817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 12605349 - 12605277
Alignment:
| Q |
150 |
aagagttaaaataaataattttgcattctattgaataagtggttcatcaaattaattacatacagtcttgtta |
222 |
Q |
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| T |
12605349 |
aagacttaaaagaaatgaatttgcattgtattaagtaaatggttcatcaaatcaattacagacattcttgtta |
12605277 |
T |
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