View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10141_high_5 (Length: 240)
Name: NF10141_high_5
Description: NF10141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10141_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 6350662 - 6350890
Alignment:
| Q |
1 |
aactctctctttttaacctttgttgtaaccgttaagaatggaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgcc |
100 |
Q |
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| T |
6350662 |
aactctctctctttaacctctgttgtaaccgttaagaatggaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaactaacttgcc |
6350761 |
T |
|
| Q |
101 |
acataa--ttagattctgttatggcagttagagagagttatgatagagtgcagttagtctatgatagctaa--gcttaaccattgtaccaaactcagtta |
196 |
Q |
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| T |
6350762 |
acataagcttagattctgttatggcagttagagagagttatgatagagtgcagttagtctatggtaggtaaacgcttaagcattttaccaaactcagtta |
6350861 |
T |
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| Q |
197 |
gtgaaataatgaattttccctcttctatt |
225 |
Q |
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| T |
6350862 |
gtgaaataatgaattttccctcttctatt |
6350890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 35081986 - 35082093
Alignment:
| Q |
41 |
gaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgccacataa--ttagattctgttatggcagttagagagagtta |
138 |
Q |
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| T |
35081986 |
gaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaactaacttgccacataagcttagattctgctatggcagttagagagaacta |
35082085 |
T |
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| Q |
139 |
tgatagag |
146 |
Q |
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| T |
35082086 |
tgatagag |
35082093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 35084185 - 35084240
Alignment:
| Q |
170 |
gcttaaccattgtaccaaactcagttagtgaaataatgaattttccctcttctatt |
225 |
Q |
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| T |
35084185 |
gcttaaccattgtaacaaactcggttagtgaaataatgaattttctctcttctatt |
35084240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 11021815 - 11021744
Alignment:
| Q |
31 |
gttaagaatggaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgccac |
102 |
Q |
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| T |
11021815 |
gttaagaatggaagaagatggaagattacttgaggagcaagtaacctgacatagctctaacaaacttgccac |
11021744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 6290254 - 6290214
Alignment:
| Q |
31 |
gttaagaatggaagaagaagaaagattacttgagaagcaag |
71 |
Q |
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| T |
6290254 |
gttaagaatggaagaagaaggaagattacttgaggagcaag |
6290214 |
T |
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