View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10141_low_1 (Length: 440)
Name: NF10141_low_1
Description: NF10141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10141_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 56165493 - 56165181
Alignment:
| Q |
17 |
agaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaatcacaccaacagacttggtgtaaaccaatatgctattaacctccaaagt |
116 |
Q |
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| T |
56165493 |
agaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaaacacaccaacagacttggtgtaaaccaatatgctattaacctccaaagt |
56165394 |
T |
|
| Q |
117 |
tccacttcttaattaaatctctttccttactatattgaacccaaaattctgctgcaagctctgtcaatcacttaaccgcacgaacaaaacaagaggaatc |
216 |
Q |
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| T |
56165393 |
tccacttcttaattaaatctctttccttactatattgaacccaaaattctgctgcaagctctgtcaatcgcttaaccgcacgaacaaaacaagaggaatc |
56165294 |
T |
|
| Q |
217 |
gcagcagtcacaccaatccaaatggtcctcctaatgctggtaggaatgaaaccaggcctgtaatattgaaaattctgtacttattatccattcaataact |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56165293 |
gcagcagtcacaccaatccaaatgg---tcctaatgctggtaggaatgaaaccaggcctgtaatattgaaaattctgtacttattatccattcaataact |
56165197 |
T |
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| Q |
317 |
tcgcaaaaattagaat |
332 |
Q |
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|||||||||||||||| |
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| T |
56165196 |
tcgcaaaaattagaat |
56165181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 63 - 414
Target Start/End: Complemental strand, 44262911 - 44262575
Alignment:
| Q |
63 |
gcaaatcacaccaacagacttggtgtaaaccaatatgctatt-aacctccaaagttccacttcttaattaaatctctttccttactatattgaacccaaa |
161 |
Q |
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| T |
44262911 |
gcaaaacacaccaacagacttggtgtaaaccaatatgctatttaacctccaaagctcctctccttag----atctccttccttactatattgaacccaaa |
44262816 |
T |
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| Q |
162 |
attctgctgcaagctctgtcaatcacttaaccgcacgaacaaaacaagaggaatcgcagcagtcacaccaatccaaatggtcctcctaatgctggtagga |
261 |
Q |
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| T |
44262815 |
actctgctgcaagctctgtaaatcgcttaactacacaaacagaacaacaacaattgcagtagtcatgccaaaccagactgtcct---aatgcttgtagga |
44262719 |
T |
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| Q |
262 |
atgaaaccaggcctgtaatattgaaaattctgtacttattatccattcaataacttc--gcaaaaattagaataatcatattccaatccatccgataact |
359 |
Q |
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|||||| |||||| || | ||||| ||||||| |||||| |||||| | || || |||||| |||| |||||| ||||||||||||||| |
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| T |
44262718 |
atgaaagcaggcc----atgt-----attctatacttat---ccattcgataactacttgcgaagattagagtaattctattcctatccatccgataact |
44262631 |
T |
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| Q |
360 |
gaaatgggacttaaa-atacacatacatcccaccaattagtaacataacaaaccaa |
414 |
Q |
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| T |
44262630 |
gaaatgggacttaaagatacacatacatcccatcaattaatggcataacaaaccaa |
44262575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 44263758 - 44263708
Alignment:
| Q |
17 |
agaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaa |
67 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
44263758 |
agaatgttgaacaagatgaagctgaaactgaatttggatttggaaggcaaa |
44263708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 44259687 - 44259653
Alignment:
| Q |
143 |
ttactatattgaacccaaaattctgctgcaagctc |
177 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
44259687 |
ttacgatattgaacccaaaattctgctgcaagctc |
44259653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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