View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10141_low_11 (Length: 237)
Name: NF10141_low_11
Description: NF10141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10141_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 4521792 - 4522014
Alignment:
| Q |
1 |
aatgtcaaattgtcttcatgtacaataagttatcgtaagctatcctatagagcgtatagaaatacattataaaaattgcttatacacatgtcataagttc |
100 |
Q |
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| T |
4521792 |
aatgtcaaattgtcttcatgtacaataagttatcgtaagctatcctatagagcgtatagaaatacatta--aaaattgcttatacacatgtcataagtta |
4521889 |
T |
|
| Q |
101 |
tttcaaagtctcataagatatcatactagtagataagctcaaagtcaatccaaacagactcaaaataatgacaggaaaatgaaaaggaaggaagttgttt |
200 |
Q |
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| T |
4521890 |
tttcaaagtctcataagttatcataccagtagataagctcaaagtcaatccaaacagactcaaaataatgacaggaaaatgaaaaggaaggaagttgttt |
4521989 |
T |
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| Q |
201 |
gagagattggtatagttgattttga |
225 |
Q |
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||||||||||||||||||| ||||| |
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| T |
4521990 |
gagagattggtatagttgactttga |
4522014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 4511172 - 4511241
Alignment:
| Q |
149 |
tccaaacagactcaaaataatgacaggaaaatgaaaaggaaggaagttgtttgagagattggtatagttg |
218 |
Q |
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||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||| |
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| T |
4511172 |
tccaaactgacccaaaataatgacaagaaaatgaaaaataaggaagttgtttgagatattcgtatagttg |
4511241 |
T |
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