View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10141_low_12 (Length: 231)
Name: NF10141_low_12
Description: NF10141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10141_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 5034031 - 5033844
Alignment:
| Q |
21 |
agctaaaggagtgtttggctgcagaattatcccgaaaaagggctggtcgggtagatcatttccatacacataatttctgtcttccctttacttacaagct |
120 |
Q |
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| T |
5034031 |
agctaaaggagtatttggctgcagaattatcccgaaaaagggctggtcgggtagatcatttccatacacataatttctgtcttccctttacttacaagct |
5033932 |
T |
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| Q |
121 |
acaactccaagtctccaagtcacagccatcttaatgttgaaataagc-aataataaaaaggcaacataactataaaaccatataagatgtggtaaa |
215 |
Q |
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| T |
5033931 |
acaactcca--------agtcacagccatcttaatgttgaaataagcaaataataaaaaggcaacataactataaaaccatataagatgtggtaaa |
5033844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 4974723 - 4974768
Alignment:
| Q |
20 |
gagctaaaggagtgtttggctgcagaattatcccgaaaaagggctg |
65 |
Q |
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| T |
4974723 |
gagctaaaggagtgtttggctgcagaattagcccgaaaaggggctg |
4974768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 4999673 - 4999720
Alignment:
| Q |
22 |
gctaaaggagtgtttggctgcagaattatcccgaaaaagggctggtcg |
69 |
Q |
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| T |
4999673 |
gctaaaggagtgtttggctgaagaattagcccgaaaaaaggttggtcg |
4999720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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