View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10141_low_2 (Length: 436)
Name: NF10141_low_2
Description: NF10141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10141_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 52583385 - 52582962
Alignment:
| Q |
1 |
aagtagtatcatcttttgaaatgatagcaggtttgggagctgcaaagtgttacactgctctggcacttcaagcaatgtctaggcatttttgtagcttaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583385 |
aagtagtatcatcttttgaaatgatagcaggtttgggagctgcaaagtgttacactgctctggcacttcaagcaatgtctaggcatttttgtagcttaag |
52583286 |
T |
|
| Q |
101 |
agatgccataatgtcccaaataaatgctgagaaaagaaaactgtttcaggatgtacctaaaattaatagtggattgtctcaactgagcttatttgagaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583285 |
agatgccataatgtcccaaataaatgctgagaaaagaaaactgtttcaggatgtacctaaaattaatagtggattgtctcaactgagcttatttgagaga |
52583186 |
T |
|
| Q |
201 |
gataataatagacagactagaatgtctctccaacaacttggagtcattcaaaaccaacgacaagtttggagacctattagagggttacctgaaacatctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583185 |
gataataatagacagactagaatgtctctccaacaacttggagtcattcaaaaccaacgacaagtttggagacctattagagggttacctgaaacatctg |
52583086 |
T |
|
| Q |
301 |
tagcaattcttcgtgcttggctctttgagcactttcttcatccgtaagcttatatcaaaattctgtttttgtttttatgttatgtcattttcttgtctta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583085 |
tagcaattcttcgtgcttggctctttgagcactttcttcatccgtaagcttatatcaaaattctgtttttgtttttatgttatgtcattttcttgtctta |
52582986 |
T |
|
| Q |
401 |
ttaatgaaatgctaatttgatgtc |
424 |
Q |
| |
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| T |
52582985 |
ttaatgaaatgctaatttgatgtc |
52582962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 52591105 - 52591061
Alignment:
| Q |
304 |
caattcttcgtgcttggctctttgagcactttcttcatccgtaag |
348 |
Q |
| |
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|||| |||||||||||||||||||| || |||||| ||||||||| |
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| T |
52591105 |
caatacttcgtgcttggctctttgaacattttcttaatccgtaag |
52591061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 43242935 - 43242984
Alignment:
| Q |
279 |
agagggttacctgaaacatctgtagcaattcttcgtgcttggctctttga |
328 |
Q |
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||||| |||||||||| ||||||| | |||||||||||||||||||||| |
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| T |
43242935 |
agaggattacctgaaagatctgtatctgttcttcgtgcttggctctttga |
43242984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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