View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10141_low_3 (Length: 317)
Name: NF10141_low_3
Description: NF10141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10141_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 2218116 - 2218408
Alignment:
| Q |
9 |
agcagagattaataacttgagacttatcgcaagctgaataatatcaataatcaataattcagtttgtaaaataatatcaaaccatgccttagaaaaatat |
108 |
Q |
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| T |
2218116 |
agcagggattaataacttgagacttatcgcaagctgaataatatcaataatcaataattcagtttgtaaaataatatcaaaccatgccttagaaaaatat |
2218215 |
T |
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| Q |
109 |
ccacatcttgcaagttgaatcaaaatagaaatcaagcttgactactactaaattgttttctttggattcacgagttacaatttgatcttgttgattttgc |
208 |
Q |
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| T |
2218216 |
ccacatcttgcaagttgaatcaaaatagaaatcaagcttgactactactaaattgttttctttggattcacgagttacaatttgatcttgttgattttgc |
2218315 |
T |
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| Q |
209 |
gcttcgctgaaaaatgtggtcaattattttcaccttggaagcaatgatataacgaagtttggtacgttgtgttgtttgaatataagaggttag |
301 |
Q |
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| T |
2218316 |
gcttcgctgaaaaatgtggtcaattattttcacattggaagcaatgatataacgaagtttggtacgttgtgttgtttgaatataagaggttag |
2218408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 1118377 - 1118289
Alignment:
| Q |
55 |
ataatcaataattcagtttgtaaaataatatcaaaccatgccttagaaaaatatccacatcttgcaagttgaatcaaaatagaaatcaag |
144 |
Q |
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| T |
1118377 |
ataatcaataattcaatttgtagaataaaataacaccaaaccatagaaaa-tatccgcaccttacaagttgaatcgaaatagaaatcaag |
1118289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 546369 - 546427
Alignment:
| Q |
115 |
cttgcaagttgaatcaaaatagaaatcaagcttgactact--actaaattgttttcttt |
171 |
Q |
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| T |
546369 |
cttgcaagttgaatcaaaataaagatcaagcttgactgctaaactaaattgtttccttt |
546427 |
T |
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