View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10141_low_7 (Length: 245)

Name: NF10141_low_7
Description: NF10141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10141_low_7
NF10141_low_7
[»] chr4 (10 HSPs)
chr4 (17-234)||(21614306-21614523)
chr4 (28-187)||(34855679-34855838)
chr4 (64-177)||(22884373-22884485)
chr4 (64-177)||(22936037-22936149)
chr4 (64-177)||(48961769-48961881)
chr4 (91-234)||(21557587-21557730)
chr4 (28-130)||(14617310-14617413)
chr4 (62-130)||(12194410-12194478)
chr4 (88-130)||(22755615-22755657)
chr4 (64-137)||(54899753-54899825)
[»] chr2 (10 HSPs)
chr2 (28-234)||(23258698-23258904)
chr2 (28-187)||(3252235-3252392)
chr2 (98-234)||(13613300-13613437)
chr2 (62-177)||(35076861-35076975)
chr2 (62-177)||(35080119-35080233)
chr2 (64-133)||(6277264-6277332)
chr2 (62-134)||(27499210-27499282)
chr2 (62-130)||(4696994-4697062)
chr2 (62-130)||(27195987-27196055)
chr2 (90-130)||(29445549-29445589)
[»] chr3 (14 HSPs)
chr3 (29-185)||(43683420-43683576)
chr3 (28-187)||(23048890-23049050)
chr3 (28-187)||(50096593-50096752)
chr3 (64-187)||(17544850-17544973)
chr3 (64-220)||(26272999-26273155)
chr3 (62-177)||(10558095-10558209)
chr3 (46-177)||(19193671-19193802)
chr3 (88-177)||(3164887-3164978)
chr3 (62-134)||(6731818-6731890)
chr3 (62-134)||(6765354-6765426)
chr3 (28-177)||(9237499-9237649)
chr3 (95-134)||(53189749-53189788)
chr3 (62-130)||(33672113-33672181)
chr3 (117-188)||(28716809-28716884)
[»] chr6 (8 HSPs)
chr6 (28-187)||(11184111-11184270)
chr6 (64-177)||(964708-964820)
chr6 (62-177)||(5190480-5190594)
chr6 (28-130)||(15394252-15394355)
chr6 (78-137)||(27315845-27315904)
chr6 (106-234)||(15586864-15586992)
chr6 (88-130)||(12489189-12489231)
chr6 (169-228)||(26175781-26175840)
[»] chr8 (11 HSPs)
chr8 (48-190)||(12104528-12104670)
chr8 (28-185)||(8855961-8856119)
chr8 (28-185)||(8857434-8857592)
chr8 (75-187)||(27805646-27805758)
chr8 (64-177)||(2847874-2847986)
chr8 (64-177)||(5952075-5952187)
chr8 (64-177)||(33383309-33383421)
chr8 (64-177)||(29354229-29354341)
chr8 (161-234)||(10649372-10649445)
chr8 (97-163)||(10648626-10648692)
chr8 (47-129)||(33578369-33578452)
[»] chr5 (9 HSPs)
chr5 (28-187)||(20473636-20473796)
chr5 (28-187)||(31375534-31375694)
chr5 (64-177)||(43103948-43104060)
chr5 (62-177)||(22035806-22035920)
chr5 (62-177)||(22039032-22039146)
chr5 (166-234)||(18019236-18019304)
chr5 (79-177)||(36700426-36700523)
chr5 (62-130)||(9421046-9421114)
chr5 (91-134)||(7290015-7290058)
[»] chr7 (10 HSPs)
chr7 (29-187)||(7570258-7570416)
chr7 (29-187)||(7576673-7576831)
chr7 (87-187)||(18973952-18974052)
chr7 (64-201)||(231716-231852)
chr7 (64-177)||(5189749-5189860)
chr7 (62-177)||(1636985-1637099)
chr7 (62-177)||(44673080-44673194)
chr7 (76-176)||(20436625-20436725)
chr7 (62-177)||(1633740-1633854)
chr7 (64-200)||(27059228-27059362)
[»] scaffold0050 (1 HSPs)
scaffold0050 (54-200)||(38707-38854)
[»] scaffold0012 (1 HSPs)
scaffold0012 (64-177)||(157049-157161)
[»] chr1 (11 HSPs)
chr1 (62-177)||(28138897-28139011)
chr1 (62-177)||(28142148-28142262)
chr1 (29-170)||(28957060-28957201)
chr1 (64-185)||(26639573-26639694)
chr1 (28-187)||(8435067-8435217)
chr1 (76-177)||(14159350-14159451)
chr1 (32-209)||(42590835-42591012)
chr1 (62-137)||(17761809-17761884)
chr1 (79-177)||(25663142-25663240)
chr1 (46-130)||(45532684-45532769)
chr1 (129-234)||(26609336-26609441)
[»] scaffold0005 (1 HSPs)
scaffold0005 (28-130)||(199964-200067)
[»] scaffold0146 (1 HSPs)
scaffold0146 (79-177)||(35803-35901)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 21614523 - 21614306
Alignment:
Q  17 acttaatgggtaatctagggatagaaaagtgttaggctgtgattatgaattaacggactttaaaaccttctatgattataggttcacctaagggattagg 116  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21614523 acttaacgggtaatctagggatagaaaagtgttaggttgtgattatgaattaacggactttaaaaccttctatgattataggttcacctaagggattaga 21614424  T
Q  117 gaattataattagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaactagaggaacaattaaacattttaaattcag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21614423 gaattataattagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaactagaggaacaattaaacattttaaattcag 21614324  T
Q  217 attaccaattagtgatga 234  Q
    ||||||||||||||||||    
T  21614323 attaccaattagtgatga 21614306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 187
Target Start/End: Complemental strand, 34855838 - 34855679
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    ||||||||||| ||||  ||||||| ||||||| | || ||||||||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  34855838 aatctagggatggaaagttgttaggttgtgattctaaaattaacggactt-aaaacctttgatgattataggttcacctaaggaattagggaattataat 34855740  T
Q  127 tagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaact 187  Q
    ||||| ||| | |||||||| |||||||||| ||||||||||||||||||| |||||||||    
T  34855739 tagaagagatggctctgagtcaagggattgacctgagctattttgttaattgtcgtaaact 34855679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 22884485 - 22884373
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| | || ||  | |||||||||| || ||    
T  22884485 aattaacggactt-aaaaccttttatgattataggttcacctaagggattagggaattataatcagaaaagacggctttggatcaagggattgacctaag 22884387  T
Q  164 ctattttgttaatt 177  Q
    ||||||||||||||    
T  22884386 ctattttgttaatt 22884373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 22936149 - 22936037
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| | || ||  | |||||||||| || ||    
T  22936149 aattaacggactt-aaaaccttttatgattataggttcacctaagggattagggaattataatcagaaaagacggctttggatcaagggattgacctaag 22936051  T
Q  164 ctattttgttaatt 177  Q
    ||||||||||||||    
T  22936050 ctattttgttaatt 22936037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 48961881 - 48961769
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| || |   | |||||||||| || ||    
T  48961881 aattaacggactt-aaaaccttttatgattataggttcacctaagggattagggaattataatcagaaaagagggcttttgatcaagggattgacctaag 48961783  T
Q  164 ctattttgttaatt 177  Q
    ||||||||||||||    
T  48961782 ctattttgttaatt 48961769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 21557730 - 21557587
Alignment:
Q  91 attataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaactaga 190  Q
    |||||||||||||||||||||| | |  ||| |||||  |||||||| |||||||| |||||||| | |||| ||||||||||||||| |||||||||||    
T  21557730 attataggttcacctaagggatcatgagattgtaatttcaaaagagggctctgagtcaagggattaacctgaactattttgttaattagcgtaaactaga 21557631  T
Q  191 ggaacaattaaacattttaaattcagattaccaattagtgatga 234  Q
     ||||||||| ||  ||||  |||| |||| ||||||| |||||    
T  21557630 agaacaattatacggtttaggttcacattaacaattagcgatga 21557587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 14617310 - 14617413
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattat-gaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    |||||||||||||||   ||||||| |||||| || |||||||||||||| | || |||  |||||||||||||||||||||| ||||||||||||| ||    
T  14617310 aatctagggatagaacgttgttaggttgtgataattgaattaacggacttaacaatctttgatgattataggttcacctaaggaattagggaattatgat 14617409  T
Q  127 taga 130  Q
    ||||    
T  14617410 taga 14617413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 12194410 - 12194478
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattaga 130  Q
    ||||||||||||||| | | ||||  | |||||||||||||||||||| ||||||||||||| ||||||    
T  12194410 tgaattaacggacttaatatcctttgacgattataggttcacctaaggaattagggaattatgattaga 12194478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 22755615 - 22755657
Alignment:
Q  88 atgattataggttcacctaagggattagggaattataattaga 130  Q
    |||||||||||||| ||||||| ||||||||||||||||||||    
T  22755615 atgattataggttcccctaaggaattagggaattataattaga 22755657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 54899753 - 54899825
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagagg 137  Q
    |||||||||||||| || ||||  |||| ||||||||||||| ||| |||||||||||||||| || |||||||    
T  54899753 aattaacggacttttaa-ccttgaatgaatataggttcacctgaggaattagggaattataatcaggaaagagg 54899825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 28 - 234
Target Start/End: Original strand, 23258698 - 23258904
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattatgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataatt 127  Q
    |||||||||||| |||  ||||| | ||||||| |||||||||  |||||||||||||  |||||||||||||||| |||||||||||||||||||||||    
T  23258698 aatctagggataaaaatttgttaagttgtgattctgaattaacacactttaaaacctttgatgattataggttcacgtaagggattagggaattataatt 23258797  T
Q  128 agaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaactagaggaacaattaaacattttaaattcagattaccaatta 227  Q
    ||||||| || |||| ||| |||||||||| |||||||||||||||||||| | |||||| ||||| ||||||||   ||||  |||||||||| |||||    
T  23258798 agaaaagtgggctctcagtcaagggattgacctgagctattttgttaattagcttaaactggaggagcaattaaatggtttaggttcagattactaatta 23258897  T
Q  228 gtgatga 234  Q
    |||||||    
T  23258898 gtgatga 23258904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 3252235 - 3252392
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    ||||||||||||||||  ||||||| ||||||| | || ||| | || |||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  3252235 aatctagggatagaaagttgttaggttgtgattctaaaattatctga-tttaaaacctttgatgattataggttcacctaaggaattagggaattataat 3252333  T
Q  127 tagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaact 187  Q
    |||||||||||   |||||| |||||||||| ||||||||||||||||||| |||||||||    
T  3252334 tagaaaagagg--gctgagtcaagggattgacctgagctattttgttaattgtcgtaaact 3252392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 234
Target Start/End: Original strand, 13613300 - 13613437
Alignment:
Q  98 gttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaactagaggaacaa 197  Q
    |||||||||| ||||||||| ||| ||||| ||||| ||| |||||||| |||||||||| |||| |||||||||||||||||||||||| |||||||||    
T  13613300 gttcacctaatggattaggggattgtaatttgaaaatagggctctgagtcaagggattgacctgaactattttgttaattatcgtaaacttgaggaacaa 13613399  T
Q  198 ttaaacattttaaattc-agattaccaattagtgatga 234  Q
    ||| ||| ||||| ||| |||||| |||||||||||||    
T  13613400 ttatacagtttaagttcaagattaacaattagtgatga 13613437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 35076861 - 35076975
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactg 161  Q
    ||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||| ||  |  | |||||||||| ||     
T  35076861 tgaattaacggactt-aaaacctttgatgactataggttcacctaagggattagggaattataatcagaaaagagggcttaggatcaagggattgaccta 35076959  T
Q  162 agctattttgttaatt 177  Q
    ||||||||||||||||    
T  35076960 agctattttgttaatt 35076975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 35080119 - 35080233
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactg 161  Q
    ||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||| ||  |  | |||||||||| ||     
T  35080119 tgaattaacggactt-aaaacctttgatgactataggttcacctaagggattagggaattataatcagaaaagagggcttaggatcaagggattgaccta 35080217  T
Q  162 agctattttgttaatt 177  Q
    ||||||||||||||||    
T  35080218 agctattttgttaatt 35080233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 6277332 - 6277264
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaa 133  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||||| ||||||    
T  6277332 aattaacggactt-aaaaccttttatgattataagttcacctaagggattagagaattataatgagaaaa 6277264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 27499210 - 27499282
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaag 134  Q
    ||||||||||||||| | | ||||  |  ||||||||||||||||||||||||||||||||| ||||||||||    
T  27499210 tgaattaacggacttaatatcctttgacaattataggttcacctaagggattagggaattatgattagaaaag 27499282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 4697062 - 4696994
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattaga 130  Q
    ||||||||||||||| | | ||||  |  ||||||||||||||||||||||||||||||||| ||||||    
T  4697062 tgaattaacggacttaatatcctttgacaattataggttcacctaagggattagggaattatgattaga 4696994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 27196055 - 27195987
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattaga 130  Q
    ||||||||||||||| | | ||||  |  ||||||||||||||||||| ||||||||||||| ||||||    
T  27196055 tgaattaacggacttaatatcctttgagaattataggttcacctaaggaattagggaattatgattaga 27195987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 29445589 - 29445549
Alignment:
Q  90 gattataggttcacctaagggattagggaattataattaga 130  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  29445589 gattataggttcacctaaggaattagggaattatgattaga 29445549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 43683420 - 43683576
Alignment:
Q  29 atctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataatt 127  Q
    |||||||||||||||| ||||||| ||||||| | || ||||||||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||     
T  43683420 atctagggatagaaaattgttaggttgtgattctaaaattaacggactt-aaaacctttgatgattataggttcacctaaggaattagggaattataatc 43683518  T
Q  128 agaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaa 185  Q
    ||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||    
T  43683519 agagaagaggcctctgagtcaagggattgacctgagctattttgttaattatcgtaaa 43683576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 23048890 - 23049050
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    ||||||||||| ||||  ||||||| ||||||| | || |||||||| |||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  23048890 aatctagggatggaaagttgttaggttgtgattctaaaattaacggattttaaaacctttgatgattataggttcacctaaggaattagggaattataat 23048989  T
Q  127 tagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaact 187  Q
    ||||||||||| |||||||| |||||||||| |||||||||||| |||||| |||||||||    
T  23048990 tagaaaagagggctctgagtcaagggattgacctgagctattttattaattgtcgtaaact 23049050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 50096593 - 50096752
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    ||||||||||| ||||  ||||||| || |||||| || ||||||||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  50096593 aatctagggatggaaagttgttaggttgcgattataaaattaacggactt-aaaacctttgatgattataggttcacctaaggaattagggaattataat 50096691  T
Q  127 tagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaact 187  Q
    ||||||| ||| |||||||| |||||||||| |||| |||||||||||||| | |||||||    
T  50096692 tagaaaatagggctctgagtcaagggattgacctgaactattttgttaattgttgtaaact 50096752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 187
Target Start/End: Complemental strand, 17544973 - 17544850
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||||| ||||||||  |||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||| |||||||||| |||||    
T  17544973 aattaacggactt-aaaacctttgatgattataggttcacttaaggaattagggaattataattagaaaagagggctctaagtcaagggattgacctgag 17544875  T
Q  164 ctatttt-gttaattatcgtaaact 187  Q
    ||||||| ||||||| |||||||||    
T  17544874 ctattttggttaattgtcgtaaact 17544850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 26272999 - 26273155
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||| || |||||||  |||||||  ||||||| | || ||||||| |||| |||||||||||||||  ||||||| ||| |||||| ||||     
T  26272999 aattaacggacattcaaacctttgatgattacgggttcacatgagagattaggaaattgtaattagaaaagagggttctgagtcaagtgattgacctgaa 26273098  T
Q  164 ctattttgttaattatcgtaaactagaggaacaattaaacattttaaattcagatta 220  Q
    ||||||||||||||||||||||||| ||||  ||||||||| ||||  |||||||||    
T  26273099 ctattttgttaattatcgtaaactacaggacaaattaaacagtttaggttcagatta 26273155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 10558209 - 10558095
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactg 161  Q
    ||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||| ||  |  | |||||||||| ||     
T  10558209 tgaattaacggactt-aaaacctttgatgactataggttcacctaagggattagggaattataatcagaaaagagggcttaggatcaagggattgaccta 10558111  T
Q  162 agctattttgttaatt 177  Q
    ||||||||||||||||    
T  10558110 agctattttgttaatt 10558095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 177
Target Start/End: Original strand, 19193671 - 19193802
Alignment:
Q  46 tgttaggctgtgattat-gaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctga 144  Q
    ||||||| |||||| || |||||||||||||| ||||||||  |||||||||||||| |||||| ||||| ||||||||||| |||||||||  ||  |     
T  19193671 tgttaggttgtgataattgaattaacggactt-aaaacctttcatgattataggttcgcctaagagattatggaattataatcagaaaagagtgcttagg 19193769  T
Q  145 gttaagggattgaactgagctattttgttaatt 177  Q
     | |||||||||| || ||||||||||||||||    
T  19193770 atcaagggattgacctaagctattttgttaatt 19193802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 3164978 - 3164887
Alignment:
Q  88 atgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgagctat--tttgttaatt 177  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||||  | ||||| |||||||||| || ||||||  ||||||||||    
T  3164978 atgaatataggttcacctaaggaattagggaattataatcagaaaagagggttttgagtcaagggattgacctaagctataatttgttaatt 3164887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 6731818 - 6731890
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaag 134  Q
    ||||||||||||||| | | ||||  |  ||||||||||||||||||||||||||||||||| ||||||||||    
T  6731818 tgaattaacggacttaatatcctttgacaattataggttcacctaagggattagggaattatgattagaaaag 6731890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 6765426 - 6765354
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaag 134  Q
    ||||||||||||||| | | ||||  |  ||||||||||||||||||||||||||||||||| ||||||||||    
T  6765426 tgaattaacggacttaatatcctttgacaattataggttcacctaagggattagggaattatgattagaaaag 6765354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 9237499 - 9237649
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattat-gaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    ||||||||||||||    ||||||| |||||| || ||||||||| |||| | ||||||  |||||||||||||||||||||| |||| ||||||||  |    
T  9237499 aatctagggatagagcgttgttaggttgtgataattgaattaacgaacttaataacctttgatgattataggttcacctaaggaattatggaattatggt 9237598  T
Q  127 tagaaaagaggtctctgagttaagggattgaactgagctattttgttaatt 177  Q
    |||| |||||  ||  |  |||||||||||| || || || ||||||||||    
T  9237599 tagataagagaacttaggattaagggattgacctaagttaatttgttaatt 9237649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 53189749 - 53189788
Alignment:
Q  95 taggttcacctaagggattagggaattataattagaaaag 134  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  53189749 taggttcacctaagggattagggaattatgattagaaaag 53189788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 33672113 - 33672181
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattaga 130  Q
    ||||||||||||||| | | ||||  |  ||||||||||||||||||| ||||||||||||| ||||||    
T  33672113 tgaattaacggacttaatatcctttgagaattataggttcacctaaggaattagggaattatgattaga 33672181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 28716884 - 28716809
Alignment:
Q  117 gaattataattagaaaagaggt----ctctgagttaagggattgaactgagctattttgttaattatcgtaaacta 188  Q
    ||||||||||| |||||||| |    ||||| || |||||||||| ||||||||||||||||||| || |||||||    
T  28716884 gaattataattggaaaagagctagggctctgggtcaagggattgacctgagctattttgttaattgtcctaaacta 28716809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 187
Target Start/End: Complemental strand, 11184270 - 11184111
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    ||||||||||| ||||  ||||||| || |||||| || ||||||||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  11184270 aatctagggatggaaagttgttaggttgcgattataaaattaacggactt-aaaacctttgatgattataggttcacctaaggaattagggaattataat 11184172  T
Q  127 tagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaact 187  Q
    ||||||||||| |||||||| |||||||||| ||||||||||||||||||| | |||||||    
T  11184171 tagaaaagagggctctgagtcaagggattgacctgagctattttgttaattgttgtaaact 11184111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 964708 - 964820
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||  |  | |||||||||| || ||    
T  964708 aattaacggactt-aaaaccttttatgattataggttcacctaaggaattagggaattataatcagaaaagagggcttaggatcaagggattgacctaag 964806  T
Q  164 ctattttgttaatt 177  Q
    ||||||||||||||    
T  964807 ctattttgttaatt 964820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 5190480 - 5190594
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactg 161  Q
    ||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||| |||||||| ||  |  | ||||||||||  |     
T  5190480 tgaattaacggactt-aaaacctttgatgactataggttcacctaagggattagggaattataattataaaagagggcttaggatcaagggattgactta 5190578  T
Q  162 agctattttgttaatt 177  Q
    ||||||||||||||||    
T  5190579 agctattttgttaatt 5190594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 15394355 - 15394252
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattat-gaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    ||||||||||||||    ||||||| |||||| || |||||||||||||| ||||||||  |||||||||||||||||||||  ||||||||||||| ||    
T  15394355 aatctagggatagagctttgttaggttgtgataattgaattaacggacttaaaaacctttgatgattataggttcacctaagcaattagggaattatgat 15394256  T
Q  127 taga 130  Q
    ||||    
T  15394255 taga 15394252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 27315845 - 27315904
Alignment:
Q  78 aaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagagg 137  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27315845 aaaacctttgatgattataggttcacctaagggattagggaattataatcagaaaagagg 27315904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 15586864 - 15586992
Alignment:
Q  106 aagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaactagaggaacaattaaacat 205  Q
    ||||||||| |||||| ||||||||| |  ||  | ||||  ||||| || | ||| |||||||| ||||||||||||||||| ||||||||||| ||      
T  15586864 aagggattatggaattgtaattagaacaagggaatatgagacaagggtttaacctgggctattttcttaattatcgtaaactataggaacaattatacgg 15586963  T
Q  206 tttaaattcagattaccaattagtgatga 234  Q
    |||| |||||||||||| |||||||||||    
T  15586964 tttagattcagattaccgattagtgatga 15586992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 12489231 - 12489189
Alignment:
Q  88 atgattataggttcacctaagggattagggaattataattaga 130  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12489231 atgattataggttcacctaagggattagggaattataattaga 12489189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 26175781 - 26175840
Alignment:
Q  169 ttgttaattatcgtaaactagaggaacaattaaacattttaaattcagattaccaattag 228  Q
    |||||||||||||||||||||||||||||||| ||  ||||| ||||||||| |||||||    
T  26175781 ttgttaattatcgtaaactagaggaacaattacacggtttaagttcagattagcaattag 26175840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 12104670 - 12104528
Alignment:
Q  48 ttaggctgtgattatgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagtt 147  Q
    ||||| ||||||| |||||||||| |||||||||||||  |||||||||||||||| |||||||||||  |||||||||||||||||||| |||| |||     
T  12104670 ttaggttgtgattctgaattaacgcactttaaaacctttgatgattataggttcacgtaagggattagcaaattataattagaaaagagggctcttagtc 12104571  T
Q  148 aagggattgaactgagctattttgttaattatcgtaaactaga 190  Q
    |||||||||  |||||||||||||||||||||| |||||||||    
T  12104570 aagggattgtcctgagctattttgttaattatcataaactaga 12104528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 8856119 - 8855961
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    |||||||||||| |||  ||||||| ||||| | |||| |||| ||| | |||||||||  ||||||||||||||||||| ||||||| |||||||| ||    
T  8856119 aatctagggatacaaagttgttaggttgtgactctgaaattaatggattgtaaaacctttgatgattataggttcacctatgggattatggaattatgat 8856020  T
Q  127 tagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaa 185  Q
    ||||||||||| |||||| | |||||||||| ||||| || |||||||||| |||||||    
T  8856019 tagaaaagagggctctgattcaagggattgacctgagatactttgttaattgtcgtaaa 8855961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 8857592 - 8857434
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    |||||||||||| |||  ||||||| ||||| | |||| |||| ||| | |||||||||  ||||||||||||||||||| ||||||| |||||||| ||    
T  8857592 aatctagggatacaaagttgttaggttgtgactctgaaattaatggattgtaaaacctttgatgattataggttcacctatgggattatggaattatgat 8857493  T
Q  127 tagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaa 185  Q
    ||||||||||| |||||| | |||||||||| ||||| || |||||||||| |||||||    
T  8857492 tagaaaagagggctctgattcaagggattgacctgagatactttgttaattgtcgtaaa 8857434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 27805758 - 27805646
Alignment:
Q  75 tttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgagctattttgtta 174  Q
    ||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| |  ||||||||| |||| |||||||||||    
T  27805758 tttaaaaccattgatgattataggttcacctaaggaattagggaattataattagaaaagatggctctgactcgagggattgacctgaactattttgtta 27805659  T
Q  175 attatcgtaaact 187  Q
    ||| |||||||||    
T  27805658 attgtcgtaaact 27805646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 2847986 - 2847874
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||  |  | |||||||||| || |     
T  2847986 aattaacggactt-aaaaccttttatgattataggttcacctaagggattagggaattataatcagaaaagagggcttaggatcaagggattgacctaaa 2847888  T
Q  164 ctattttgttaatt 177  Q
    ||||||||||||||    
T  2847887 ctattttgttaatt 2847874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 5952075 - 5952187
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||  |  | |||||||||| || ||    
T  5952075 aattaacggactt-aaaaccttttatgattataggttcacctaaggaattagggaattataatcagaaaagagggcttaggatcaagggattgacctaag 5952173  T
Q  164 ctattttgttaatt 177  Q
    ||||||||||||||    
T  5952174 ctattttgttaatt 5952187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 33383309 - 33383421
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||  |  |  | |||||||||| || ||    
T  33383309 aattaacggactt-aaaaccttttatgattataggttcacctaaggaattagggaattataatcagaaaagagggtttaggatcaagggattgacctaag 33383407  T
Q  164 ctattttgttaatt 177  Q
    ||||||||||||||    
T  33383408 ctattttgttaatt 33383421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 29354229 - 29354341
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagag-gtctctgagttaagggattgaactga 162  Q
    ||||||||||||| ||| | ||| ||||||||||||||||||||| || |||| ||||||||| |  |||||| |||| ||||| |||||||||| || |    
T  29354229 aattaacggacttcaaacctttc-atgattataggttcacctaagcgagtaggaaattataatcaagaaagagagtct-tgagtcaagggattgacctaa 29354326  T
Q  163 gctattttgttaatt 177  Q
    |||||||||||||||    
T  29354327 gctattttgttaatt 29354341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 10649372 - 10649445
Alignment:
Q  161 gagctattttgttaattatcgtaaactagaggaacaattaaacattttaaattcagattaccaattagtgatga 234  Q
    |||||||||||||||||||||||||||||||| || |||| |   ||||  ||||||||| |||||||||||||    
T  10649372 gagctattttgttaattatcgtaaactagagggaccattatagtgtttaggttcagattatcaattagtgatga 10649445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 10648626 - 10648692
Alignment:
Q  97 ggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||||||||| || ||||||| ||||||||| || |||||||| |||| ||||| |||||    
T  10648626 ggttcacctaagggattgggaaattatagttagaaaagggggctctgagtcaaggtattgacctgag 10648692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 33578452 - 33578369
Alignment:
Q  47 gttaggctgtgattat-gaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattag 129  Q
    |||||| |||||| || ||||| |||||||| | | ||||| |  ||||||||||||||||||| ||||||||||||| |||||    
T  33578452 gttaggttgtgatcatcgaattcacggacttaatatccttcgacaattataggttcacctaaggaattagggaattatgattag 33578369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 187
Target Start/End: Complemental strand, 20473796 - 20473636
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    ||||||||||| ||||  ||||||| ||||||| | || |||||||| |||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  20473796 aatctagggatggaaagttgttaggttgtgattctaaaattaacgga-tttaaaacctttgatgattataggttcacctaaggaattagggaattataat 20473698  T
Q  127 tagaaaaga-ggtctctgagttaagggattgaactgagctattttgttaattatcgtaaact 187  Q
    ||||||||| || |||||||| |||||||||| ||||||||||||||||||| |||||||||    
T  20473697 tagaaaagaggggctctgagtcaagggattgacctgagctattttgttaattgtcgtaaact 20473636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 31375534 - 31375694
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    ||||||||||| ||||  ||||| | ||||||| | || ||||||||||| ||||||||  |||||||||||||||||||||| ||||| ||||||||||    
T  31375534 aatctagggatggaaagttgttatgttgtgattctaaaattaacggactt-aaaacctttgatgattataggttcacctaaggaattagagaattataat 31375632  T
Q  127 tagaaaagaggtctctgagttaagggattgaactgagctatttt-gttaattatcgtaaact 187  Q
    ||||||||||| |||||||| |||||||| | |||||||||||| |||||||||||||||||    
T  31375633 tagaaaagagggctctgagtcaagggatttacctgagctattttggttaattatcgtaaact 31375694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 43104060 - 43103948
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||  |  | |||||||||| || ||    
T  43104060 aattaacggactt-aaaaccttttatgattataggttcacctaagggattagggaattataatcagaaaagaggacttaggatcaagggattgacctaag 43103962  T
Q  164 ctattttgttaatt 177  Q
     |||||||||||||    
T  43103961 ttattttgttaatt 43103948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 22035806 - 22035920
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtc-tctgagttaagggattgaact 160  Q
    ||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||| | | ||| | |||||||||| ||    
T  22035806 tgaattaacggactt-aaaacctttgatgactataggttcacctaagggattagggaattataatcagaaaagagggcttatga-tcaagggattgacct 22035903  T
Q  161 gagctattttgttaatt 177  Q
     ||||||||||||||||    
T  22035904 aagctattttgttaatt 22035920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 22039032 - 22039146
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtc-tctgagttaagggattgaact 160  Q
    ||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||| | | ||| | |||||||||| ||    
T  22039032 tgaattaacggactt-aaaacctttgatgactataggttcacctaagggattagggaattataatcagaaaagagggcttatga-tcaagggattgacct 22039129  T
Q  161 gagctattttgttaatt 177  Q
     ||||||||||||||||    
T  22039130 aagctattttgttaatt 22039146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 18019236 - 18019304
Alignment:
Q  166 attttgttaattatcgtaaactagaggaacaattaaacattttaaattcagattaccaattagtgatga 234  Q
    |||||||||||||||||| |||||||||| |||| |||  | || |||||||||||||||| |||||||    
T  18019236 attttgttaattatcgtatactagaggaataatttaacggtgtagattcagattaccaattcgtgatga 18019304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 36700426 - 36700523
Alignment:
Q  79 aaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgagctattttgttaatt 177  Q
    |||||||  |||| ||||||||||||| ||| |||||||||||||||| || ||||||| || |  |  |||||||||| || ||||||||||||||||    
T  36700426 aaaccttgaatgaatataggttcacctgaggaattagggaattataatcaggaaagagggct-taggacaagggattgacctaagctattttgttaatt 36700523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 9421114 - 9421046
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattaga 130  Q
    ||||||||||||||| | | ||||  |  ||||||||||||||||||| ||||||||||||| ||||||    
T  9421114 tgaattaacggacttaatatcctttgagaattataggttcacctaaggaattagggaattatgattaga 9421046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 7290015 - 7290058
Alignment:
Q  91 attataggttcacctaagggattagggaattataattagaaaag 134  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||    
T  7290015 attataggtttacctaaggaattagggaattatgattagaaaag 7290058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 7570258 - 7570416
Alignment:
Q  29 atctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataatt 127  Q
    |||||||||||||||| ||||||| ||||||| | || ||||||||||| ||||||||  ||| |||||| ||||||||||| ||||||||||||||||     
T  7570258 atctagggatagaaaattgttaggttgtgattctaaaattaacggactt-aaaacctttgatggttatagattcacctaaggaattagggaattataatc 7570356  T
Q  128 agaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaact 187  Q
    ||| |||||| |||||||| |||||||||| ||||||||||||||||||| | |||||||    
T  7570357 agagaagagggctctgagtcaagggattgacctgagctattttgttaattgttgtaaact 7570416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 7576673 - 7576831
Alignment:
Q  29 atctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataatt 127  Q
    |||||||||||||||| ||||||| ||||||| | || ||||||||||| ||||||||  ||| |||||| ||||||||||| ||||||||||||||||     
T  7576673 atctagggatagaaaattgttaggttgtgattctaaaattaacggactt-aaaacctttgatggttatagattcacctaaggaattagggaattataatc 7576771  T
Q  128 agaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaact 187  Q
    ||| |||||| |||||||| |||||||||| ||||||||||||||||||| | |||||||    
T  7576772 agagaagagggctctgagtcaagggattgacctgagctattttgttaattgttgtaaact 7576831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 18974052 - 18973952
Alignment:
Q  87 tatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaac 186  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||  ||||||| |||||||||| ||||||||||||||||||| ||||||||    
T  18974052 tatgattataggttcacctgaggaattagggaattataattagaaaagagggttctgagtcaagggattgacctgagctattttgttaattgtcgtaaac 18973953  T
Q  187 t 187  Q
    |    
T  18973952 t 18973952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 201
Target Start/End: Original strand, 231716 - 231852
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||| || |||||||  | |||||| | |||||||||| |||||||| ||| ||||  ||||||||| |||||||| ||||||||| ||||||    
T  231716 aattaacggacattcaaacctttgaagattatggattcacctaagagattaggggattgtaatatgaaaagaggactctgagtcaagggattg-actgag 231814  T
Q  164 ctattttgttaattatcgtaaactagaggaacaattaa 201  Q
    ||||||| ||||||||||||||||||| ||| ||||||    
T  231815 ctattttcttaattatcgtaaactagatgaataattaa 231852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 5189860 - 5189749
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||  |  | |||||||||| || ||    
T  5189860 aattaacggactt-aaaaccttttatgattataggttcacctaagggattagggaattataatcagaaaagagggcttaggatcaagggattgacct-ag 5189763  T
Q  164 ctattttgttaatt 177  Q
    ||||||||||||||    
T  5189762 ctattttgttaatt 5189749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 1637099 - 1636985
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactg 161  Q
    ||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||| ||  |  | |||||||||| ||     
T  1637099 tgaattaacggactt-aaaacctttgatgactataggttcacctaagggattagggaattataatcagaaaagagggcttaggatcaagggattgaccta 1637001  T
Q  162 agctattttgttaatt 177  Q
    ||||||||||||||||    
T  1637000 agctattttgttaatt 1636985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 44673194 - 44673080
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactg 161  Q
    ||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||| ||  |  | |||||||||| ||     
T  44673194 tgaattaacggactt-aaaacctttgatgactataggttcacctaagggattagggaattataatcagaaaagagggcttaggatcaagggattgaccta 44673096  T
Q  162 agctattttgttaatt 177  Q
    ||||||||||||||||    
T  44673095 agctattttgttaatt 44673080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 20436625 - 20436725
Alignment:
Q  76 ttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgagctattttgttaa 175  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||| ||  |  | |||||||| | || ||||||||||||||    
T  20436625 ttaaaacctttgatgattataggttcacctaagggattagggaattataatcagaaaagagggcttaggatcaagggattcacctaagctattttgttaa 20436724  T
Q  176 t 176  Q
    |    
T  20436725 t 20436725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 1633854 - 1633740
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactg 161  Q
    ||||||||||||||| ||||||||  |||| |||||||||||| ||||||||| ||||||||||| |||||||||| ||  |  | |||||||||| ||     
T  1633854 tgaattaacggactt-aaaacctttgatgactataggttcaccgaagggattaaggaattataatcagaaaagagggcttaggatcaagggattgaccta 1633756  T
Q  162 agctattttgttaatt 177  Q
    ||||||||||||||||    
T  1633755 agctattttgttaatt 1633740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 27059228 - 27059362
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    |||||| ||||||| ||| |||  ||||||| |||||| |||||| ||||| | |||| ||||||||||||||| || ||||| |||||||||| ||||     
T  27059228 aattaatggactttcaaaactttgatgattacaggttcgcctaagtgattaagaaattgtaattagaaaagagggctatgagtcaagggattgacctgaa 27059327  T
Q  164 ctattttgttaattatcgtaaactagaggaacaatta 200  Q
    |||   |||||||||||||||||||  ||||||||||    
T  27059328 cta--gtgttaattatcgtaaactattggaacaatta 27059362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 38854 - 38707
Alignment:
Q  54 tgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaaggg 152  Q
    |||||||||||| ||||  ||| ||||||||||  ||||||||| |||||||||||||||||| |||||||||||| |||||||| |||||||| ||| |    
T  38854 tgtgattatgaaattaattgacattaaaacctttgatgattatatgttcacctaagggattagagaattataattaaaaaagagggctctgagtcaagag 38755  T
Q  153 attgaactgagctattttgttaattatcgtaaactagaggaacaatta 200  Q
    ||||| |||||||||||| |||||| | ||||| ||||||||||||||    
T  38754 attgacctgagctattttattaattgttgtaaattagaggaacaatta 38707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 157049 - 157161
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    ||||||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||||| |||||||||| || ||  | |||||||||| || ||    
T  157049 aattaacggactt-aaaaccttttaagattataggttcagctaagggattagggaattataatcagaaaagagggctttggatcaagggattgacctaag 157147  T
Q  164 ctattttgttaatt 177  Q
    ||||||||||||||    
T  157148 ctattttgttaatt 157161  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 28139011 - 28138897
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactg 161  Q
    ||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||| ||  |  | |||||||||| ||     
T  28139011 tgaattaacggactt-aaaacctttgatgactataggttcacctaagggattagggaattataatcagaaaagagggcttaggatcaagggattgaccta 28138913  T
Q  162 agctattttgttaatt 177  Q
    ||||||||||||||||    
T  28138912 agctattttgttaatt 28138897  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 28142262 - 28142148
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactg 161  Q
    ||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||| ||  |  | |||||||||| ||     
T  28142262 tgaattaacggactt-aaaacctttgatgactataggttcacctaagggattagggaattataatcagaaaagagggcttaggatcaagggattgaccta 28142164  T
Q  162 agctattttgttaatt 177  Q
    ||||||||||||||||    
T  28142163 agctattttgttaatt 28142148  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 170
Target Start/End: Original strand, 28957060 - 28957201
Alignment:
Q  29 atctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataatt 127  Q
    |||||||||||||||| ||||||| ||||||| | || ||||||||||| ||| ||||  |||||||||||||||||||||| ||||| ||||||||||     
T  28957060 atctagggatagaaaattgttaggttgtgattctaaaattaacggactt-aaaccctttgatgattataggttcacctaaggaattagagaattataatc 28957158  T
Q  128 agaaaagaggtctctgagttaagggattgaactgagctatttt 170  Q
    ||| |||||  || ||| | |||||||||| ||||||||||||    
T  28957159 agagaagagacctatgaatcaagggattgacctgagctatttt 28957201  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 26639694 - 26639573
Alignment:
Q  64 aattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgag 163  Q
    |||||||| || ||||||||||  ||||||||||||||| |||| | ||||| ||||||||||||||||||||  |||| ||| |||||||||| || |     
T  26639694 aattaacgtacattaaaacctttgatgattataggttcagctaaagaattagagaattataattagaaaagagtgctctaagtcaagggattgacctaaa 26639595  T
Q  164 ctattttgttaattatcgtaaa 185  Q
    ||||||| |||||| |||||||    
T  26639594 ctatttttttaattgtcgtaaa 26639573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 8435067 - 8435217
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    ||||||||||| ||||  ||||||| || |||||| || ||||||||||| ||||||||  |||||||||| |||||         ||||||||||||||    
T  8435067 aatctagggatggaaagttgttaggttgcgattataaaattaacggactt-aaaacctttgatgattatagattcac---------tagggaattataat 8435156  T
Q  127 tagaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaact 187  Q
    ||||||||||| | |||||| |||||||||| ||||||||||||||||||| | |||||||    
T  8435157 tagaaaagagggccctgagtcaagggattgacctgagctattttgttaattgttgtaaact 8435217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 14159451 - 14159350
Alignment:
Q  76 ttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgagctattttgttaa 175  Q
    ||||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||| ||  |  | ||||||||||  | ||||||||||||||    
T  14159451 ttaaaacctttgatgactataggttcacctaagggattagggaattataatcagaaaagagggcttaggatcaagggattgacttaagctattttgttaa 14159352  T
Q  176 tt 177  Q
    ||    
T  14159351 tt 14159350  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 42591012 - 42590835
Alignment:
Q  32 tagggatagaaaagtgttaggctgtgattatgaa-ttaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattaga 130  Q
    ||||||||||||  ||||| | ||||||| | || ||||| ||| ||||||| ||  ||||||| |||||||| ||||||||||||||||| || |||||    
T  42591012 tagggatagaaagttgttaagttgtgatttttaaattaacagacattaaaacttttgatgattacaggttcac-taagggattagggaattgtagttaga 42590914  T
Q  131 aaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaactagaggaacaattaaacatttta 209  Q
    ||||| |  | ||||| || | ||||| ||||| |||||||||||| || | |||||| | ||||||||||||| ||||    
T  42590913 aaagatggatttgagtcaaagaattgacctgagttattttgttaatcattgcaaactataagaacaattaaacagttta 42590835  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 17761809 - 17761884
Alignment:
Q  62 tgaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattagaaaagagg 137  Q
    ||||||||||||||| | | ||||  |  ||||||||||||||||||||||||||||||||| |||||| ||||||    
T  17761809 tgaattaacggacttgatatcctttgacaattataggttcacctaagggattagggaattatgattagataagagg 17761884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 25663240 - 25663142
Alignment:
Q  79 aaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgagctattttgttaatt 177  Q
    |||||||  |||| ||||||||||||||| ||||||| |||||||||| || ||||||| || |   | |||||||||| || ||||||||||||||||    
T  25663240 aaaccttgaatgaatataggttcacctaaaggattagagaattataatcaggaaagagggcttttgatcaagggattgacctaagctattttgttaatt 25663142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 45532769 - 45532684
Alignment:
Q  46 tgttaggctgtgattat-gaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataattaga 130  Q
    ||||||| |||||| || |||||||||||||| | | ||||  | |||||||||||||||||||| ||||||||||||| ||||||    
T  45532769 tgttaggttgtgataattgaattaacggacttaatatcctttgacgattataggttcacctaaggaattagggaattatgattaga 45532684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 26609336 - 26609441
Alignment:
Q  129 gaaaagaggtctctgagttaagggattgaactgagctattttgttaattatcgtaaactagaggaacaattaaacattttaaattcagattaccaattag 228  Q
    |||||||||  | |||||| ||||||||| || || ||||||||||||  || ||||||| ||||||||||  ||  |||| ||||| |||| |||||||    
T  26609336 gaaaagaggattatgagttgagggattgacctaagttattttgttaatcgtcataaactaaaggaacaattgtacgatttagattcaaattagcaattag 26609435  T
Q  229 tgatga 234  Q
    | ||||    
T  26609436 taatga 26609441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 200067 - 199964
Alignment:
Q  28 aatctagggatagaaaagtgttaggctgtgattat-gaattaacggactttaaaaccttctatgattataggttcacctaagggattagggaattataat 126  Q
    |||||||||||||||   ||||||| |||||| || |||||||||||||| | || |||  |||||||||||||||||||||| ||||||||||||| ||    
T  200067 aatctagggatagaacgttgttaggttgtgataattgaattaacggacttaacaatctttgatgattataggttcacctaaggaattagggaattatgat 199968  T
Q  127 taga 130  Q
    ||||    
T  199967 taga 199964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 35803 - 35901
Alignment:
Q  79 aaaccttctatgattataggttcacctaagggattagggaattataattagaaaagaggtctctgagttaagggattgaactgagctattttgttaatt 177  Q
    |||||||  |||| ||||||||||||| ||| ||||| |||||||||| || ||||||| ||  |  | |||||||| | || ||||||||||||||||    
T  35803 aaaccttgaatgaatataggttcacctgaggaattagagaattataatcaggaaagagggcttaggatcaagggatttatctaagctattttgttaatt 35901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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