View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10141_low_8 (Length: 245)
Name: NF10141_low_8
Description: NF10141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10141_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 52583919 - 52583674
Alignment:
| Q |
1 |
aaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttc-----ctgattttatgttcactagtactaataaagaaaattgcatcata |
95 |
Q |
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| T |
52583919 |
aaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttctcttcctgattttatgttcactagtactaataaagaaaattgcatcata |
52583820 |
T |
|
| Q |
96 |
cttgagtagtattcgaat------------taagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatcaaattgttttg |
183 |
Q |
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| T |
52583819 |
cttgagtagtattcgaataaaaagcttaattaagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatcaaattgttttg |
52583720 |
T |
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| Q |
184 |
gtatgaactatataaatgttttcataagctatctttgagaatttat |
229 |
Q |
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| T |
52583719 |
gtatgaactatataaatgttttcataagctatctttgagaatttat |
52583674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 19395216 - 19395147
Alignment:
| Q |
162 |
aaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttattga |
232 |
Q |
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| T |
19395216 |
aaacgaaaatcaaattgtttttgtataagctata-aaatgttttcattagctatcttggagaattgattga |
19395147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 38033892 - 38033934
Alignment:
| Q |
127 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
169 |
Q |
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| T |
38033892 |
ttatcaaataagtgtttatgtataagttatttatataacaaaa |
38033934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 43133890 - 43133932
Alignment:
| Q |
127 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
169 |
Q |
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|||||| |||||| |||||||||||||||||| |||||||||| |
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| T |
43133890 |
ttatcacataagtatttatgtataaattatttctaaaacaaaa |
43133932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 5939015 - 5939051
Alignment:
| Q |
134 |
ataagtgtttatgtataaattatttttaaaacaaaaa |
170 |
Q |
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|||||||||||||||||| ||||||||| |||||||| |
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| T |
5939015 |
ataagtgtttatgtataagttatttttataacaaaaa |
5939051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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