View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10141_low_9 (Length: 240)
Name: NF10141_low_9
Description: NF10141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10141_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 39384199 - 39384418
Alignment:
| Q |
4 |
tagttgaaattatatatgtaccttgccattatagtttctatcaaaataaagacatgtcccaaagtgcttaaacacagtgtcctttaaatcaggaggaaac |
103 |
Q |
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| T |
39384199 |
tagttgaaattatatatgtaccttgccattatagtttctatcaaaataaagacatgtcccaaagtgcttaaacacagtgtcctttaaatcaggaggaaac |
39384298 |
T |
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| Q |
104 |
ctaggaataatatcatagctataaacaattctgtaaaacttaatacaattatctttcaaattcttctccatgtatttagcaa--atatgtcatctccaac |
201 |
Q |
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| T |
39384299 |
ctaggaataatatcatagctataaacaattctgtaaaacttaataccattatctttcaaattcttctccatgtattcagtaaatatatgtcatctccaac |
39384398 |
T |
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| Q |
202 |
tcttggttgaccaaatgtgt |
221 |
Q |
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|||||||||||||||||||| |
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| T |
39384399 |
tcttggttgaccaaatgtgt |
39384418 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 6289609 - 6289576
Alignment:
| Q |
191 |
tcatctccaactcttggttgaccaaatgtgtaaa |
224 |
Q |
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| T |
6289609 |
tcatctccaactcttggttgtccaaatgtgtaaa |
6289576 |
T |
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