View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_high_1 (Length: 614)
Name: NF10142_high_1
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 22 - 404
Target Start/End: Original strand, 32790134 - 32790516
Alignment:
| Q |
22 |
gtgcctgtttccaataagttgatatttccagccaagctgctcaactagagacttttctgaaagataagcagctaaaccaccataacccatcatacaagct |
121 |
Q |
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| T |
32790134 |
gtgcctgtttccaataagttgatatttccagccaagctgctcaactagagacttttctgaaagataagctgctaaaccaccataacccatcatacaagct |
32790233 |
T |
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| Q |
122 |
agtttagcagcactttgattaccaaagttttgtcgactttatccgtgaacaaaatcaggatttaccttaacaatcaacagagttacaaccattcatattg |
221 |
Q |
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| T |
32790234 |
agtttagcagcactttgattaccaaagttttgtccactttatccgtgaacaaaatcaggatttaccttaacagtcaacagagttacaaccattcatattg |
32790333 |
T |
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| Q |
222 |
atttatttgagtttatcgactgacatgaacacttgtatgtatatcaacatcgtgcaaaaagactggaaaattaaacaggtaaataagaaataacctgtcg |
321 |
Q |
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| T |
32790334 |
atttatttgagtttatcgactgacatgaacacttgtatgtatatcaacatcgtgcaaaaagactggaaaattaaacaggcaaataagaaataacctgtcg |
32790433 |
T |
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| Q |
322 |
cccttcggtttcctcatgcgatcgccattagctttggatacagcatcaatttcagctcgaatttgacgcatctaggattgtat |
404 |
Q |
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| T |
32790434 |
cccttcggtttcctcatgcgatcgccattagctttggatacagcaccaatttcagctcgaatttgacgcatctaggattgtat |
32790516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 469 - 608
Target Start/End: Original strand, 32790584 - 32790717
Alignment:
| Q |
469 |
gtagtacctacttccatgggtctgcgactgcgaccatccaagcgaagtccttctgggctcacgtattccattttttggttttcaaattcaaataaatttg |
568 |
Q |
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| T |
32790584 |
gtagtacctacttccatgggtctgc------gaccatccaagcgaagtccttctgggctcacgtattccattttttggtgttcaaattcaaaaaaaattg |
32790677 |
T |
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| Q |
569 |
tgaaggcattgttgttttgcgatactttgtcctttgcttc |
608 |
Q |
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| T |
32790678 |
tgaaggcaatgttgttttgcgatactttgtcctttgcttc |
32790717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 48283217 - 48283315
Alignment:
| Q |
56 |
agctgctcaactagagacttttctgaaagataagcagctaaaccaccataacccatcatacaagctagtttagcagcactttgattaccaaagttttgt |
154 |
Q |
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| T |
48283217 |
agctgctcaactagagacttttctgaaagataagctgctaaaccataataacccgtcatacaagcaaggttggcagcactttgtttaccagggttttgt |
48283315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 48283665 - 48283734
Alignment:
| Q |
275 |
gcaaaaagactggaaaattaaacaggtaaataagaaataacctgtcgcccttcggtttcctcatgcgatc |
344 |
Q |
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| T |
48283665 |
gcaaaaagactgggaaattaaacaagtaaataagaaataacctgtcgccctttggtttcctcatgcgatc |
48283734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 48284253 - 48284308
Alignment:
| Q |
346 |
ccattagctttggatacagcatcaatttcagctcgaatttgacgcatctaggattg |
401 |
Q |
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|||| |||||||||||||||| |||| || ||||||||||| |||||||||||||| |
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| T |
48284253 |
ccatcagctttggatacagcaccaatctctgctcgaatttgtcgcatctaggattg |
48284308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 50271467 - 50271416
Alignment:
| Q |
58 |
ctgctcaactagagacttttctgaaagataagcagctaaaccaccataaccc |
109 |
Q |
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| T |
50271467 |
ctgctcaactagagacttttccgaaagataagctgctaagccatgataaccc |
50271416 |
T |
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