View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10142_high_11 (Length: 400)
Name: NF10142_high_11
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 84 - 384
Target Start/End: Original strand, 14206023 - 14206324
Alignment:
| Q |
84 |
taaggttacaaaaaagtatttgtaagtaagaacttccatttcatttcgcaacaaagcgatttacaccttactcaaaatttgcaaaatcatagttcatggg |
183 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14206023 |
taaggttacaaaaaagtatttgtaa----gaacttccaattcatttcgcaacaaagcgatttgcaccttactcaaaatttgcaaaatcatagttcatggg |
14206118 |
T |
|
| Q |
184 |
aataacatattggtattt----------attacaataataacatttcatttcatgtaccttttccaac-nnnnnnnnnnncatttcttgtaccctgatca |
272 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
14206119 |
aataacatattggtatttattacaatacattacaataataacatttcatttcatgtaccttttccaacaacaaaaaaaaacatgtcttgtaccctgatca |
14206218 |
T |
|
| Q |
273 |
cctactattcacaatgattttcactc--aatacaaattcataagtatttactaaagtaatcacatatgtagcatcgacatttgcgtgtttcgtgtctaat |
370 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |
|
|
| T |
14206219 |
cctactattcacaatgattttcactcaaaatacaaattcataagtatttactatagtaatc--------agcatcgacatttgtgtgtttggtgtctaat |
14206310 |
T |
|
| Q |
371 |
atttatcaatattt |
384 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14206311 |
atttatcaatattt |
14206324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University