View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_high_15 (Length: 330)
Name: NF10142_high_15
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 324
Target Start/End: Complemental strand, 5194106 - 5193802
Alignment:
| Q |
25 |
gacttcatattaaaatttatcttaagtttcatttactattaaacattattgtctcgatcccgacgcgtaaaacagattcttttatcgagattagttatca |
124 |
Q |
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| T |
5194106 |
gacttcatattaaaatttatcttaaatctcatttactattaaacattattgtctcgatcccgacgcgtaaaacagattctctgatcgagattagttatca |
5194007 |
T |
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| Q |
125 |
tggtagaaaattcatatataggacatgataactcaaagg-----nnnnnnnntgtaaaccttgttagaaaatctcttttttctaccggtcttgtccctgt |
219 |
Q |
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| T |
5194006 |
tggtagaaaattcatatctaggacatgataactcaaaggaaaaaaaaaaaaaagtaaaccttgttagaaaatctcttttttctaccggtcttgtccctat |
5193907 |
T |
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| Q |
220 |
cgacacattnnnnnnnnnnnnnncatatatcgtgttggtcctttaatctcctccttttctctttgatgaatttcatgcttatttctttactttatttcat |
319 |
Q |
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| T |
5193906 |
cgacacattaaaaaattaaaaaacatatatcgtgttggtcctttaatctcctccttttctctttgatgaatttcatgcttatttctttactttatttcat |
5193807 |
T |
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| Q |
320 |
ctctc |
324 |
Q |
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|||| |
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| T |
5193806 |
atctc |
5193802 |
T |
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