View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10142_high_19 (Length: 287)

Name: NF10142_high_19
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10142_high_19
NF10142_high_19
[»] chr7 (21 HSPs)
chr7 (7-178)||(42649252-42649426)
chr7 (190-263)||(388433-388506)
chr7 (190-259)||(17026063-17026132)
chr7 (190-263)||(5795555-5795628)
chr7 (190-259)||(7539716-7539785)
chr7 (190-259)||(36926415-36926484)
chr7 (188-259)||(3931414-3931485)
chr7 (193-272)||(45174646-45174725)
chr7 (190-259)||(666281-666350)
chr7 (190-259)||(26215723-26215792)
chr7 (219-259)||(35544233-35544273)
chr7 (208-256)||(45054817-45054865)
chr7 (188-259)||(7443833-7443904)
chr7 (220-263)||(15433665-15433708)
chr7 (220-263)||(28950355-28950398)
chr7 (188-259)||(37333701-37333772)
chr7 (220-259)||(43052318-43052357)
chr7 (71-104)||(14063382-14063415)
chr7 (71-104)||(14373410-14373443)
chr7 (231-263)||(26719201-26719233)
chr7 (219-259)||(42071555-42071595)
[»] chr3 (16 HSPs)
chr3 (190-276)||(54432927-54433013)
chr3 (190-259)||(5418049-5418118)
chr3 (188-262)||(45714119-45714193)
chr3 (190-259)||(7029141-7029210)
chr3 (192-257)||(25252882-25252947)
chr3 (190-259)||(39471144-39471213)
chr3 (190-263)||(41609320-41609393)
chr3 (192-247)||(3526294-3526349)
chr3 (192-259)||(32688567-32688634)
chr3 (193-259)||(20407815-20407881)
chr3 (190-252)||(46294309-46294371)
chr3 (193-259)||(51067701-51067767)
chr3 (190-259)||(27040609-27040678)
chr3 (188-260)||(33439306-33439378)
chr3 (219-259)||(39133813-39133853)
chr3 (219-259)||(39943797-39943837)
[»] chr5 (22 HSPs)
chr5 (188-259)||(26217427-26217498)
chr5 (190-259)||(11136728-11136797)
chr5 (188-259)||(26299450-26299521)
chr5 (188-259)||(27451055-27451126)
chr5 (188-259)||(14501411-14501482)
chr5 (190-259)||(3805438-3805507)
chr5 (190-259)||(5385154-5385223)
chr5 (190-251)||(19283657-19283718)
chr5 (190-255)||(27905486-27905551)
chr5 (190-263)||(29322069-29322142)
chr5 (190-259)||(34720128-34720197)
chr5 (190-259)||(34856952-34857021)
chr5 (208-259)||(19715797-19715848)
chr5 (193-259)||(26297914-26297980)
chr5 (190-252)||(34724111-34724173)
chr5 (190-259)||(43385804-43385873)
chr5 (70-104)||(2033128-2033162)
chr5 (190-259)||(1841042-1841111)
chr5 (190-259)||(32157450-32157519)
chr5 (222-259)||(39408757-39408794)
chr5 (212-252)||(4984037-4984077)
chr5 (219-259)||(18879655-18879695)
[»] chr4 (22 HSPs)
chr4 (190-259)||(52705599-52705668)
chr4 (190-259)||(7505430-7505499)
chr4 (193-263)||(12790207-12790277)
chr4 (190-259)||(9469434-9469502)
chr4 (190-259)||(25133939-25134008)
chr4 (190-259)||(40797160-40797229)
chr4 (190-263)||(44792842-44792915)
chr4 (191-259)||(50605462-50605530)
chr4 (188-263)||(45674308-45674383)
chr4 (190-259)||(22720750-22720819)
chr4 (190-247)||(48803777-48803834)
chr4 (190-259)||(49820384-49820453)
chr4 (193-276)||(9222823-9222906)
chr4 (188-259)||(21436311-21436382)
chr4 (220-259)||(48977040-48977079)
chr4 (208-259)||(51409179-51409230)
chr4 (71-104)||(11024919-11024952)
chr4 (190-259)||(19850138-19850207)
chr4 (71-104)||(23915459-23915492)
chr4 (188-260)||(36156974-36157047)
chr4 (190-259)||(55892736-55892805)
chr4 (190-258)||(48732022-48732090)
[»] chr2 (13 HSPs)
chr2 (188-263)||(33830894-33830969)
chr2 (190-259)||(2647665-2647734)
chr2 (190-259)||(20986070-20986139)
chr2 (219-259)||(12139401-12139441)
chr2 (190-259)||(36538083-36538152)
chr2 (219-259)||(26435802-26435842)
chr2 (190-257)||(29478049-29478116)
chr2 (71-102)||(33406995-33407026)
chr2 (189-259)||(35380359-35380429)
chr2 (190-259)||(27633148-27633217)
chr2 (71-104)||(38763607-38763640)
chr2 (222-259)||(41958585-41958622)
chr2 (231-259)||(40675212-40675240)
[»] chr1 (16 HSPs)
chr1 (188-259)||(24575304-24575375)
chr1 (190-257)||(38061686-38061753)
chr1 (190-259)||(5205175-5205244)
chr1 (190-259)||(28005741-28005810)
chr1 (190-259)||(32179339-32179408)
chr1 (190-259)||(35309014-35309083)
chr1 (188-259)||(7955653-7955724)
chr1 (190-239)||(19507944-19507993)
chr1 (190-263)||(24470575-24470648)
chr1 (190-259)||(36418526-36418595)
chr1 (196-253)||(48152634-48152691)
chr1 (188-252)||(45654439-45654503)
chr1 (190-259)||(29678169-29678238)
chr1 (190-247)||(31815895-31815952)
chr1 (190-259)||(43090097-43090161)
chr1 (190-262)||(15014021-15014093)
[»] chr6 (9 HSPs)
chr6 (197-259)||(33109845-33109907)
chr6 (190-259)||(18961851-18961920)
chr6 (190-259)||(7957060-7957129)
chr6 (190-261)||(10962485-10962556)
chr6 (221-259)||(10346249-10346287)
chr6 (193-247)||(17439546-17439600)
chr6 (190-259)||(6998582-6998651)
chr6 (202-259)||(11460825-11460882)
chr6 (72-104)||(17398917-17398949)
[»] chr8 (3 HSPs)
chr8 (208-259)||(43966906-43966957)
chr8 (190-260)||(34515561-34515631)
chr8 (190-259)||(9413329-9413398)
[»] scaffold0135 (1 HSPs)
scaffold0135 (193-276)||(33476-33559)
[»] scaffold0106 (1 HSPs)
scaffold0106 (190-259)||(26499-26568)
[»] scaffold0316 (1 HSPs)
scaffold0316 (221-257)||(18747-18783)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 42649426 - 42649252
Alignment:
Q  7 actccctctgtctcaaattaagtgttcatttt-gagatttacaggatttttnnnnnnntgattaattgattttaatggtaaaatatgtttcatttactag 105  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  42649426 actccctctgtctcacattaagtgttcatttttgagatttacaggatttttaaaaaaatgattaattgattttaatggtaaaatatgtttcatttactag 42649327  T
Q  106 tactaaaatac---atctatgaactgtagttagtgaagtagttagaagattgaattagaataaataaggttatgtt 178  Q
    |||||||||||   || ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  42649326 tactaaaatacattatttatgaactgtagttagtgaagtagttagaaggttgaattagaat-aataaggttatgtt 42649252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 388433 - 388506
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttc 263  Q
    ||||||||||||||||  |  |||||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  388433 tggaaatgagtcgagtcgaaccgaacttgcctgagctcggttcgactcgataagaattggttcggctcgagttc 388506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 17026132 - 17026063
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||||| ||||||||||  |||| ||||||||||||||||||||||||    
T  17026132 tggaaatgagtcgagtcgagtcgaacttgtctgagctcgactcgactcgataagaattggttcggctcga 17026063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 5795628 - 5795555
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttc 263  Q
    ||||||||||||||||  | |||||| |  |||||||||| |||| ||||||||||||||||||||||||||||    
T  5795628 tggaaatgagtcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcgagttc 5795555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 7539785 - 7539716
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||||| |||||| |||||||||  ||||||||||| |||| ||||||||||||||||| ||||||    
T  7539785 tggaaatgagccgagttgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcga 7539716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 36926415 - 36926484
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  | |||||| | ||||||||||| |||| ||||||||||||||||||||||||    
T  36926415 tggaaatgagtcgagtcgaatcgaacctgtctgagctcggctcgactcgataagaattggttcggctcga 36926484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 3931485 - 3931414
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||| ||||  |  ||||| | ||||||||||| |||| ||||||||||||||||||||||||    
T  3931485 gttggaaatgagttgagtccaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcga 3931414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 45174646 - 45174725
Alignment:
Q  193 aaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttcaaaatgaac 272  Q
    |||||||||||||  |  ||||| | ||||||||||| |||| || ||||||||||||||||||||||||| | ||||||    
T  45174646 aaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcaataagaattggttcggctcgagttcgacatgaac 45174725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 666350 - 666281
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |  ||||| | ||||||||||| | || ||||||||||||||||||||||||    
T  666350 tggaaatgagtcgagtcgaaccgaacatgtctgagctcggcttgactcgataagaattggttcggctcga 666281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 26215723 - 26215792
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |  ||||| |  |||||||||| |||| ||||||||||||||||||||||||    
T  26215723 tggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcga 26215792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 35544273 - 35544233
Alignment:
Q  219 tctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  35544273 tctgagctcgattcgactcgataagaattggttcggctcga 35544233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 45054817 - 45054865
Alignment:
Q  208 agtcgaacttatctgagctcggttcgattcgataagaattggttcggct 256  Q
    |||||||||| |||||||| || |||| |||||||||||||||||||||    
T  45054817 agtcgaacttgtctgagcttggctcgactcgataagaattggttcggct 45054865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 7443833 - 7443904
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||||  |  ||||  | ||||||||||| |||| ||||||||||||||||||| ||||    
T  7443833 gttggaaatgagtcgagtcgaaccgaatctgtctgagctcggctcgactcgataagaattggttcggttcga 7443904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 15433665 - 15433708
Alignment:
Q  220 ctgagctcggttcgattcgataagaattggttcggctcgagttc 263  Q
    |||||||||| | || ||||||||||||||||||||||||||||    
T  15433665 ctgagctcggcttgactcgataagaattggttcggctcgagttc 15433708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 28950398 - 28950355
Alignment:
Q  220 ctgagctcggttcgattcgataagaattggttcggctcgagttc 263  Q
    |||||||||| || | ||||||||||||||||||||||||||||    
T  28950398 ctgagctcggctcaactcgataagaattggttcggctcgagttc 28950355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 37333701 - 37333772
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||||  |  ||||| |  ||||||| || |||| ||||||||||||||||||||||||    
T  37333701 gttggaaatgagtcgagtcgaaccgaacctgcctgagcttggctcgactcgataagaattggttcggctcga 37333772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 43052318 - 43052357
Alignment:
Q  220 ctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  43052318 ctgagctcggctcgactcgataagaattggttcggctcga 43052357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 14063415 - 14063382
Alignment:
Q  71 ttgattttaatggtaaaatatgtttcatttacta 104  Q
    ||||||||||||||||||||||||| ||||||||    
T  14063415 ttgattttaatggtaaaatatgtttaatttacta 14063382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 14373443 - 14373410
Alignment:
Q  71 ttgattttaatggtaaaatatgtttcatttacta 104  Q
    ||||||||||||||||||||||||| ||||||||    
T  14373443 ttgattttaatggtaaaatatgtttaatttacta 14373410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 26719201 - 26719233
Alignment:
Q  231 tcgattcgataagaattggttcggctcgagttc 263  Q
    |||| ||||||||||||||||||||||||||||    
T  26719201 tcgactcgataagaattggttcggctcgagttc 26719233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 42071555 - 42071595
Alignment:
Q  219 tctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||| |||| || |||||||||||||||||||||    
T  42071555 tctgagctcggctcgactcaataagaattggttcggctcga 42071595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 276
Target Start/End: Complemental strand, 54433013 - 54432927
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttcaaaatgaaccttt 276  Q
    |||||||||||||||| ||||||||  | ||||||||||  |||| |||||||||||||||||||||||||||||||| ||||||||    
T  54433013 tggaaatgagtcgagtcaagtcgaatatgtctgagctcgactcgactcgataagaattggttcggctcgagttcaaaacgaaccttt 54432927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 5418049 - 5418118
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||||| |||||| |||| | || ||||||||||||||||||||||||    
T  5418049 tggaaatgagtcgagtcgagtcgaacttgtctgagttcggcttgactcgataagaattggttcggctcga 5418118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 45714119 - 45714193
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagtt 262  Q
    ||||||||||||||||||| | |||||| ||||||||||||  |||| ||  |||||||||| |||| |||||||    
T  45714119 gttggaaatgagtcgagttgaatcgaacctatctgagctcgactcgactcattaagaattggctcggttcgagtt 45714193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 7029141 - 7029210
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  ||||||||| ||||||| |||  |||| |||||||||||| |||| ||||||    
T  7029141 tggaaatgagtcgagtccagtcgaactcatctgagttcgactcgactcgataagaatttgttcagctcga 7029210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 25252882 - 25252947
Alignment:
Q  192 gaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctc 257  Q
    ||||||||||||||  |||||||| | |||||||||   |||| ||||||||||||||||||||||    
T  25252882 gaaatgagtcgagtcgagtcgaacctgtctgagctcaactcgactcgataagaattggttcggctc 25252947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 39471213 - 39471144
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |  ||||| | ||||| ||||| |||| ||||||||||||||||||||||||    
T  39471213 tggaaatgagtcgagtcgaaccgaacctgtctgaactcggctcgactcgataagaattggttcggctcga 39471144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 41609320 - 41609393
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttc 263  Q
    ||||||||||||||||  |  ||||| |  |||||||||| |||| |||||||||||||||||| |||||||||    
T  41609320 tggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcgactcgagttc 41609393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 3526349 - 3526294
Alignment:
Q  192 gaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaatt 247  Q
    ||||||||||||||| ||||||||||| || ||||||| |||| ||||||| ||||    
T  3526349 gaaatgagtcgagttgagtcgaacttagctaagctcggctcgactcgataaaaatt 3526294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 32688567 - 32688634
Alignment:
Q  192 gaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||| |  ||||  | ||||||||||| |||| ||||||| ||||||||||||||||    
T  32688567 gaaatgagtcgagttgaaccgaatctgtctgagctcggctcgactcgataaaaattggttcggctcga 32688634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 20407881 - 20407815
Alignment:
Q  193 aaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||||||||  |||| ||| | | ||||||||| |||| |||||||| |||||||||||||||    
T  20407881 aaatgagtcgagtcgagtccaacgtgtttgagctcggctcgactcgataagtattggttcggctcga 20407815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 46294371 - 46294309
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttc 252  Q
    ||||||||||||||||  |||||||||  ||||||||||| ||||  | ||||||||||||||    
T  46294371 tggaaatgagtcgagtcgagtcgaactcgtctgagctcggctcgacgcaataagaattggttc 46294309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 51067701 - 51067767
Alignment:
Q  193 aaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||| || |||||||| ||| |||||  ||| | |||||||||||| |||||||||||    
T  51067701 aaatgagtcgagtcaaatcgaacttgtctaagctcaattctaatcgataagaattagttcggctcga 51067767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 27040678 - 27040609
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||||| | |||||||   |||| ||| ||||| ||||||||||||||    
T  27040678 tggaaatgagtcgagtcgagtcgaacttgtttgagctcaactcgactcgttaagatttggttcggctcga 27040609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 33439378 - 33439306
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgag 260  Q
    ||||||||||||||||||  | |||||| ||||||||||||  |||| ||  |||||||||| |||| |||||    
T  33439378 gttggaaatgagtcgagtcgaatcgaacctatctgagctcgactcgactcattaagaattggctcggttcgag 33439306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 39133813 - 39133853
Alignment:
Q  219 tctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||| | |||| ||||||||||||||||||||||||    
T  39133813 tctgagctcagctcgactcgataagaattggttcggctcga 39133853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 39943837 - 39943797
Alignment:
Q  219 tctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||| |||| ||||||||||||||||| ||||||    
T  39943837 tctgagctcggctcgactcgataagaattggttcagctcga 39943797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 26217427 - 26217498
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||| || |||||||||||||||||||||    
T  26217427 gttggaaatgagtcgagtcgagtcgaacttgtctgagctcggttcgactcaataagaattggttcggctcga 26217498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 11136797 - 11136728
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||||| ||||| ||||| |||||||||||||||| ||||||||||||    
T  11136797 tggaaatgagtcgagtcgagtcgaacttgtctgaactcggctcgattcgataagaataggttcggctcga 11136728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 26299450 - 26299521
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||| |||||||||||||  |||| ||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  26299450 gttgaaaatgagtcgagtcgagtcaaacttgtctgagctcgattcgactcgataagaattggttcggctcga 26299521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 27451126 - 27451055
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||||  |||| ||| | |||||||||| ||||| ||||||||||||||||||||||||    
T  27451126 gttggaaatgagtcgagtcgagtcaaacctgtctgagctcgattcgactcgataagaattggttcggctcga 27451055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 14501482 - 14501411
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||| ||  ||||||| || ||||||||||| |||| ||||||||||| ||||||||||||    
T  14501482 gttggaaatgagtcgcgtcgagtcgaatttgtctgagctcggctcgactcgataagaatcggttcggctcga 14501411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 3805507 - 3805438
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |  ||||| | ||||||||||| |||| ||||||||||||||||||||||||    
T  3805507 tggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcga 3805438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 5385223 - 5385154
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  | |||||||| |||||||||| ||||||||||| | |||| |||||||||||    
T  5385223 tggaaatgagtcgagtcgaatcgaacttttctgagctcgattcgattcgattaaaatttgttcggctcga 5385154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 19283718 - 19283657
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggtt 251  Q
    ||||||||||||||||  | |||||||||||||||||||  |||| ||||||||||||||||    
T  19283718 tggaaatgagtcgagtagaatcgaacttatctgagctcgactcgactcgataagaattggtt 19283657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 27905486 - 27905551
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggc 255  Q
    ||||||||||||||||  |  ||||||||||||||||||| |||| | ||||||||||||||||||    
T  27905486 tggaaatgagtcgagtcgaaccgaacttatctgagctcggctcgacttgataagaattggttcggc 27905551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 29322069 - 29322142
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttc 263  Q
    ||||||||||||||||  |  ||||| |  |||||||||| |||| ||||||||||||||||||||||||||||    
T  29322069 tggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcgagttc 29322142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 34720197 - 34720128
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||| | || ||||||| ||||| ||||||||||||||||||| ||||    
T  34720197 tggaaatgagtcgagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttcggttcga 34720128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 34856952 - 34857021
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||  | |||||| ||| ||||| ||||||||||||||||||||||||    
T  34856952 tggaaatgagtcgagtcgagtcgaatctgtctgagttcgattcgactcgataagaattggttcggctcga 34857021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 19715797 - 19715848
Alignment:
Q  208 agtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||||| |||||||||| ||||| ||||||| ||||||||||||||||    
T  19715797 agtcgaacttgtctgagctcgattcgactcgataataattggttcggctcga 19715848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 26297914 - 26297980
Alignment:
Q  193 aaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||| | ||||| ||| | | |||||||| ||||| ||||||||||||||||||||||||    
T  26297914 aaatgagtcgaatcaagtcaaacctgtgtgagctcgattcgactcgataagaattggttcggctcga 26297980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 34724173 - 34724111
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttc 252  Q
    ||||||||||||||||  |||||||| | || ||||||| ||||| |||||||||||||||||    
T  34724173 tggaaatgagtcgagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttc 34724111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 43385804 - 43385873
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||| | |||||  |||||||||  ||||||||||| |||| ||||||||||||||||| ||||||    
T  43385804 tggaaatgtgccgagtcgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcga 43385873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 2033162 - 2033128
Alignment:
Q  70 attgattttaatggtaaaatatgtttcatttacta 104  Q
    ||||||||||||| |||||||||||||||||||||    
T  2033162 attgattttaatgataaaatatgtttcatttacta 2033128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 1841111 - 1841042
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |  | ||| | ||||||||||  |||| ||||||||||||||||||||||||    
T  1841111 tggaaatgagtcgagtcgaaccaaacctgtctgagctcgactcgactcgataagaattggttcggctcga 1841042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 32157519 - 32157450
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |   |||| | |||| |||||| |||| ||||||||||||||||||||||||    
T  32157519 tggaaatgagtcgagtcgaactgaacctgtctgggctcggctcgactcgataagaattggttcggctcga 32157450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 39408757 - 39408794
Alignment:
Q  222 gagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  39408757 gagctcgattcgactcgataagaattggttcggctcga 39408794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 4984077 - 4984037
Alignment:
Q  212 gaacttatctgagctcggttcgattcgataagaattggttc 252  Q
    |||||| ||||||||||| |||| |||||||||||||||||    
T  4984077 gaacttgtctgagctcggctcgactcgataagaattggttc 4984037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 18879655 - 18879695
Alignment:
Q  219 tctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||| |||| |||| ||||||||||||||||||||||||    
T  18879655 tctgagttcggctcgactcgataagaattggttcggctcga 18879695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 52705599 - 52705668
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  52705599 tggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcga 52705668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 7505430 - 7505499
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||||| ||||||||||| |||| ||||||||||||| ||||||||||    
T  7505430 tggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattgattcggctcga 7505499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 12790277 - 12790207
Alignment:
Q  193 aaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttc 263  Q
    |||||||||||||  |  ||||| | ||||||||||| ||||||||||||||||||| |||||||||||||    
T  12790277 aaatgagtcgagtcgaaccgaacctgtctgagctcggctcgattcgataagaattggctcggctcgagttc 12790207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 9469434 - 9469502
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  | |||||| | ||||||||||| |||| ||||||||||||||||||||||||    
T  9469434 tggaaatgagtcgagtcga-tcgaacctgtctgagctcggctcgactcgataagaattggttcggctcga 9469502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 25133939 - 25134008
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||  | ||||||||||  |||| ||||||||||||||||||||||||    
T  25133939 tggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcga 25134008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 40797160 - 40797229
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||  | ||||||||||  |||| ||||||||||||||||||||||||    
T  40797160 tggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcga 40797229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 44792915 - 44792842
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttc 263  Q
    ||||||||||||||||  |  ||||| | | ||||||||| |||| ||||||||||||||||||||||||||||    
T  44792915 tggaaatgagtcgagtcgaaccgaacctgtatgagctcggctcgactcgataagaattggttcggctcgagttc 44792842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 50605462 - 50605530
Alignment:
Q  191 ggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||||||||||  |  ||||| | ||||||||||| |||| ||||||||||||||||||||||||    
T  50605462 ggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcga 50605530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 45674308 - 45674383
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttc 263  Q
    ||||||||||||||||||  |  ||||| |  |||||||||| |||| ||||||||||||||||||||| ||||||    
T  45674308 gttggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggcttgagttc 45674383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 22720750 - 22720819
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||| ||||||  | |||||||  ||||||||||| || | ||||||||||||||||||||||||    
T  22720750 tggaaatgaatcgagtcgaatcgaactagtctgagctcggctcaactcgataagaattggttcggctcga 22720819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 48803834 - 48803777
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaatt 247  Q
    ||||||||||||||| | ||||||||||| || ||||||| |||||||||||| ||||    
T  48803834 tggaaatgagtcgagctgagtcgaacttagctcagctcggctcgattcgataaaaatt 48803777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 49820384 - 49820453
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||| ||||||  | |||||| |  |||||||||| |||| ||||||||||||||||||||||||    
T  49820384 tggaaatgaatcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcga 49820453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 9222906 - 9222823
Alignment:
Q  193 aaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttcaaaatgaaccttt 276  Q
    ||||||||||||| || |||||  | ||||||||||  || | || ||||||||||||||||||||||||  ||| ||||||||    
T  9222906 aaatgagtcgagtcaaatcgaaactgtctgagctcgactcaactcaataagaattggttcggctcgagtttcaaacgaaccttt 9222823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 21436311 - 21436382
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||||  |  ||||| | |||||| |||| |||| ||||||||||||| ||||||||||    
T  21436311 gttggaaatgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataagaattgattcggctcga 21436382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 48977040 - 48977079
Alignment:
Q  220 ctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  48977040 ctgaactcggctcgattcgataagaattggttcggctcga 48977079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 51409230 - 51409179
Alignment:
Q  208 agtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||||| ||||||||||  |||| |||||||||||| |||||||||||    
T  51409230 agtcgaacttgtctgagctcgactcgactcgataagaatttgttcggctcga 51409179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 11024919 - 11024952
Alignment:
Q  71 ttgattttaatggtaaaatatgtttcatttacta 104  Q
    ||||||||||||||| ||||||||||||||||||    
T  11024919 ttgattttaatggtataatatgtttcatttacta 11024952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 19850138 - 19850207
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |  ||||| | ||||||||||| |||| |||||||  |||||||||||||||    
T  19850138 tggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataaacattggttcggctcga 19850207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 23915459 - 23915492
Alignment:
Q  71 ttgattttaatggtaaaatatgtttcatttacta 104  Q
    ||||||||||||||||||||||||| ||||||||    
T  23915459 ttgattttaatggtaaaatatgtttaatttacta 23915492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 36157047 - 36156974
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaa-cttatctgagctcggttcgattcgataagaattggttcggctcgag 260  Q
    ||||||||||||||||||||| ||||| |  ||||||||||| ||||| ||  |||||||||| |||| |||||    
T  36157047 gttggaaatgagtcgagttaaatcgaatccaatctgagctcgattcgactcattaagaattggctcggttcgag 36156974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 55892805 - 55892736
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  | |||||  ||||||||||||  |||| |||||||||||| | |||||||||    
T  55892805 tggaaatgagtcgagtcgaatcgaatctatctgagctcgactcgactcgataagaatttgctcggctcga 55892736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 48732090 - 48732022
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcg 258  Q
    ||||||||||||||||  ||| |||||  | ||||||||| |||| |||||| |||||||||| |||||    
T  48732090 tggaaatgagtcgagtcgagttgaactcgtgtgagctcggctcgactcgatatgaattggttcagctcg 48732022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 33830894 - 33830969
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttc 263  Q
    ||||||||||||||||||  |  ||||| | ||||||||||| |||| ||||||||||||||||||||||||||||    
T  33830894 gttggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgagttc 33830969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 2647734 - 2647665
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  ||||||| || ||||| ||||| |||| ||||||||||||||||||||||||    
T  2647734 tggaaatgagtcgagtcgagtcgaatttgtctgaactcggctcgactcgataagaattggttcggctcga 2647665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 20986070 - 20986139
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |  ||||| | ||||||||||| |||| ||||||||||||||||||||||||    
T  20986070 tggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcga 20986139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 12139401 - 12139441
Alignment:
Q  219 tctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  12139401 tctgagctcggttcgactcgataagaattggttcggctcga 12139441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 36538083 - 36538152
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |   |||| | ||||||||||| |||| ||||||||||||||||||||||||    
T  36538083 tggaaatgagtcgagtcgaactgaacctgtctgagctcggctcgactcgataagaattggttcggctcga 36538152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 26435802 - 26435842
Alignment:
Q  219 tctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  26435802 tctgagctcggctcgattcgataagaattggttcggttcga 26435842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 29478049 - 29478116
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctc 257  Q
    |||||||||| ||||| ||| ||||||  ||||||||| |||||| || |||||| ||||||||||||    
T  29478049 tggaaatgagacgagtcaagccgaactcgtctgagctcagttcgactcaataagatttggttcggctc 29478116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 102
Target Start/End: Original strand, 33406995 - 33407026
Alignment:
Q  71 ttgattttaatggtaaaatatgtttcatttac 102  Q
    ||||||||||||||||||||||||||||||||    
T  33406995 ttgattttaatggtaaaatatgtttcatttac 33407026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 35380359 - 35380429
Alignment:
Q  189 ttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||||||| ||||| ||||||| ||  || ||||||| |||| |||||||||||| | |||||||||    
T  35380359 ttggaaatgagtggagttgagtcgaagttgacttagctcggctcgactcgataagaattagatcggctcga 35380429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 27633148 - 27633217
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |  ||||| |  |||||||||| |||| | ||||||||||||||||||||||    
T  27633148 tggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgacttgataagaattggttcggctcga 27633217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 38763640 - 38763607
Alignment:
Q  71 ttgattttaatggtaaaatatgtttcatttacta 104  Q
    ||||||||||||||||||| ||||||||||||||    
T  38763640 ttgattttaatggtaaaatgtgtttcatttacta 38763607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 41958585 - 41958622
Alignment:
Q  222 gagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  41958585 gagctcggttcgactcgataaaaattggttcggctcga 41958622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 259
Target Start/End: Original strand, 40675212 - 40675240
Alignment:
Q  231 tcgattcgataagaattggttcggctcga 259  Q
    |||||||||||||||||||||||||||||    
T  40675212 tcgattcgataagaattggttcggctcga 40675240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 24575304 - 24575375
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||||  |||||||| | |||||||||| || || ||||||||||||||||||||||||    
T  24575304 gttggaaatgagtcgagtcgagtcgaacctgtctgagctcgatttgaatcgataagaattggttcggctcga 24575375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 38061753 - 38061686
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctc 257  Q
    ||||||||||||||||  |||||||| | |||||||||| ||||| ||||||||||||||||||||||    
T  38061753 tggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactcgataagaattggttcggctc 38061686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 5205244 - 5205175
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||| | |||||||||| ||||| || |||||||||||||||||||||    
T  5205244 tggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactccataagaattggttcggctcga 5205175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 28005741 - 28005810
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||| | ||||||||||  |||| ||||||||||||||||||||||||    
T  28005741 tggaaatgagtcgagtcgagtcgaacctctctgagctcgactcgactcgataagaattggttcggctcga 28005810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 32179339 - 32179408
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |  |||||||  |||||||||| |||||||||||||||||||||||||||||    
T  32179339 tggaaatgagtcgagtcgaaccgaacttgcctgagctcggctcgattcgataagaattggttcggctcga 32179408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 35309014 - 35309083
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||| ||||  |  ||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  35309014 tggaaatgagttgagtcgaaccgaacctacctgagctcggttcgactcgataagaattggttcggctcga 35309083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 7955653 - 7955724
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||||  |||||||  | ||||||||||  |||| || |||||||||||||||||||||    
T  7955653 gttggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcaataagaattggttcggctcga 7955724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 19507944 - 19507993
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcga 239  Q
    ||||||||||||||||  |||||||||||||||||||||| |||| ||||    
T  19507944 tggaaatgagtcgagtcgagtcgaacttatctgagctcggctcgactcga 19507993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 24470648 - 24470575
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttc 263  Q
    ||||||||||||||||  |  ||||| |  |||||||||| || | ||||||||||||||||||||||||||||    
T  24470648 tggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcaactcgataagaattggttcggctcgagttc 24470575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 36418526 - 36418595
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  | |||||  |  |||||||||| |||| ||||||||||||||||||||||||    
T  36418526 tggaaatgagtcgagtcgaatcgaatctgcctgagctcggctcgactcgataagaattggttcggctcga 36418595  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 48152634 - 48152691
Alignment:
Q  196 tgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcg 253  Q
    |||||||| || | |||||||| |||||| ||||||||| ||||||||||||||||||    
T  48152634 tgagtcgaattgaatcgaacttgtctgagttcggttcgactcgataagaattggttcg 48152691  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 45654503 - 45654439
Alignment:
Q  188 gttggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttc 252  Q
    ||||||||||||||||||  |||||||| |  |||||||||  |||| |||||||||||||||||    
T  45654503 gttggaaatgagtcgagtcgagtcgaacctgcctgagctcgactcgactcgataagaattggttc 45654439  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 29678238 - 29678169
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  | |||||| | |||||||| |  |||| |||||||||| |||||||||||||    
T  29678238 tggaaatgagtcgagtcgaatcgaacctgtctgagcttgactcgactcgataagaaatggttcggctcga 29678169  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 31815895 - 31815952
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaatt 247  Q
    ||||||||||||||| | ||||||||||| || ||||||| |||| ||||||| ||||    
T  31815895 tggaaatgagtcgagctgagtcgaacttagctaagctcggatcgactcgataaaaatt 31815952  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 43090161 - 43090097
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |||||||||| |||||||||||      |||| |||||||||||||||||||    
T  43090161 tggaaatgagtcgagtcgagtcgaacttgtctgagctcgg-----ctcgacaagaattggttcggctcga 43090097  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 15014021 - 15014093
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagtt 262  Q
    ||||||||||||||||  | || ||||| ||||||||||  |||||||  |||||||||| |||| |||||||    
T  15014021 tggaaatgagtcgagtcgaatcaaacttgtctgagctcgactcgattcattaagaattggctcggttcgagtt 15014093  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 33109845 - 33109907
Alignment:
Q  197 gagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||||  |||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  33109845 gagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcga 33109907  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 18961851 - 18961920
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||||||||||| || |||||| |  |||||||||| |||| ||||||||||||||||||||||||    
T  18961851 tggaaatgagtcgagtcaaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcga 18961920  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 7957060 - 7957129
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |  ||||| | ||||||||||| |||| ||||||||||||||||||||||||    
T  7957060 tggaaatgagtcgagtcgacccgaacctgtctgagctcggctcgactcgataagaattggttcggctcga 7957129  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 10962556 - 10962485
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagt 261  Q
    ||||||||||||||||  | |||||| ||||||||||||  |||||||  ||||||||||||||| ||||||    
T  10962556 tggaaatgagtcgagtcgaatcgaacctatctgagctcgactcgattcattaagaattggttcggttcgagt 10962485  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 10346249 - 10346287
Alignment:
Q  221 tgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  10346249 tgagctcggctcgattcgataagaattggttcggctcga 10346287  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 17439546 - 17439600
Alignment:
Q  193 aaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaatt 247  Q
    |||||||||||||| ||||||||||| || ||||||| |||| ||||||| ||||    
T  17439546 aaatgagtcgagttgagtcgaacttagctaagctcggctcgactcgataaaaatt 17439600  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 6998582 - 6998651
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |  ||||| | ||||||||||| |||| |||||||||||| | |||||||||    
T  6998582 tggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaatttgctcggctcga 6998651  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 11460882 - 11460825
Alignment:
Q  202 gagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||| |||||||||| | ||| ||||  ||||||||||||||||||||| |||||||    
T  11460882 gagttgagtcgaacttgtttgaactcgactcgattcgataagaattggtttggctcga 11460825  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 17398917 - 17398949
Alignment:
Q  72 tgattttaatggtaaaatatgtttcatttacta 104  Q
    ||||||||||| |||||||||||||||||||||    
T  17398917 tgattttaatgataaaatatgtttcatttacta 17398949  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 43966906 - 43966957
Alignment:
Q  208 agtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    |||||||||| ||||| ||||| |||| ||||||||||||||||||||||||    
T  43966906 agtcgaacttgtctgaactcggctcgactcgataagaattggttcggctcga 43966957  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 34515561 - 34515631
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgag 260  Q
    ||||||||||||||||  | |||||| |||||||||||| ||||||||  |||||||||| |||| |||||    
T  34515561 tggaaatgagtcgagtcgaatcgaacctatctgagctcgattcgattcattaagaattggctcggttcgag 34515631  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 9413398 - 9413329
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||||||||||||  |   |||||| ||||||||||  |||| |||||||||| |||||||||||||    
T  9413398 tggaaatgagtcgagtcgaactgaacttgtctgagctcgactcgactcgataagaaatggttcggctcga 9413329  T

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Target: scaffold0135 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 33559 - 33476
Alignment:
Q  193 aaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcgagttcaaaatgaaccttt 276  Q
    ||||||||||||| || |||||  | ||||||||||  || | || ||||||||||||||||||||||||  ||| ||||||||    
T  33559 aaatgagtcgagtcaaatcgaaactgtctgagctcgactcaactcaataagaattggttcggctcgagtttcaaacgaaccttt 33476  T

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Target: scaffold0106 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 26499 - 26568
Alignment:
Q  190 tggaaatgagtcgagttaagtcgaacttatctgagctcggttcgattcgataagaattggttcggctcga 259  Q
    ||||||| ||||||||| | |||||| | | ||||||||  |||| ||||||||||||||||| ||||||    
T  26499 tggaaatcagtcgagttgaatcgaacctgtttgagctcgactcgactcgataagaattggttcagctcga 26568  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 18747 - 18783
Alignment:
Q  221 tgagctcggttcgattcgataagaattggttcggctc 257  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  18747 tgagctcggctcgactcgataagaattggttcggctc 18783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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