View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_high_2 (Length: 541)
Name: NF10142_high_2
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 16644768 - 16645006
Alignment:
| Q |
21 |
atccccacaccagttattgtcattaccaatactttgtactc---cattgacaaggaacagatgaaaagattcttttttagttgttgaaagagagggctga |
117 |
Q |
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| T |
16644768 |
atccccacaccagttattgtcattaccaatactttgtagtcatgcattgaaaaggaacagatgaaaagattcttttttagttgttgaaagagagggctga |
16644867 |
T |
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| Q |
118 |
atctcgtaaatacttacaactactatatatattttcatgcctgtaaagggcacgaatgctagtgcagtttagagttgcatccactacactagtaagtagt |
217 |
Q |
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| T |
16644868 |
atctcgtaaatacttacaactactatatattttttcatgcctgtaaagagaacgaatgctagtgcattttagagttgcatccactacactagtaagtagt |
16644967 |
T |
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| Q |
218 |
agtaacatattacattgttaaaattacgaaactagtgag |
256 |
Q |
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| T |
16644968 |
agtaacatattacattgttaaaaatacgaaactagtgag |
16645006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 332 - 474
Target Start/End: Original strand, 16645071 - 16645213
Alignment:
| Q |
332 |
acatggatcattcgagtgaggaatcaactttatgaactgatcgagagaaagccaatacatcattaggagcttgagctgtttcaccatttgaaattatgtt |
431 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16645071 |
acatgaatcattcgagtgaggaatcaactttatgaactgatcgagagaaagccaatacatcattaggagcttgagctgtttcaccatttgaaattatgtt |
16645170 |
T |
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| Q |
432 |
gtcacgaatgatccttttggtcactgtatcactctctaattcc |
474 |
Q |
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| T |
16645171 |
gtcacgaatgatccttttggtcactgtgtcattctctaattcc |
16645213 |
T |
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