View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10142_high_27 (Length: 251)
Name: NF10142_high_27
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_high_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 45408523 - 45408760
Alignment:
| Q |
1 |
taaagtaagatgatctataaattcaatattcaaaagattttggtgaagatatatcttcaatctcacttatgtggttgttcttaatttaatgaaatgattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45408523 |
taaagtaagatgatctataaattcaatattcaaaagattttggtgaagatatatatacaatctcacttgtgtggttgttcttaatttaatgaaatgattt |
45408622 |
T |
|
| Q |
101 |
aacctaatgagattctcgttcatatatccaacattatttaactcttaaagacgtattctaatatgatgaaccccataatctaaatcacctaataattttt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45408623 |
aacataatgagattctcgttcatatatccaacattatttaactcctaaagacgtattctaatatgatgaaccccataatctaaatcacctaataattttt |
45408722 |
T |
|
| Q |
201 |
tatacaaaaatagttgcactcaatggaactagtaccct |
238 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
45408723 |
tatacaaaaatagttgcactcagtagaactagtaccct |
45408760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 11655342 - 11655308
Alignment:
| Q |
57 |
tcaatctcacttatgtggttgttcttaatttaatg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11655342 |
tcaatctcacttatgtggttgttcttaatctaatg |
11655308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University