View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10142_high_28 (Length: 250)

Name: NF10142_high_28
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10142_high_28
NF10142_high_28
[»] chr6 (5 HSPs)
chr6 (17-248)||(29487525-29487759)
chr6 (65-208)||(7646826-7646969)
chr6 (99-197)||(12607123-12607221)
chr6 (132-232)||(25935579-25935681)
chr6 (165-199)||(28898443-28898477)
[»] chr7 (7 HSPs)
chr7 (67-232)||(27425779-27425946)
chr7 (65-199)||(22326862-22326996)
chr7 (70-199)||(23992011-23992140)
chr7 (111-199)||(42195427-42195515)
chr7 (67-208)||(8307531-8307669)
chr7 (70-171)||(41405803-41405904)
chr7 (67-199)||(17611848-17611980)
[»] chr3 (14 HSPs)
chr3 (67-231)||(521791-521957)
chr3 (67-213)||(36517520-36517666)
chr3 (70-232)||(45166235-45166399)
chr3 (60-237)||(1561276-1561455)
chr3 (67-199)||(50612935-50613067)
chr3 (76-232)||(23643005-23643163)
chr3 (70-188)||(31788314-31788432)
chr3 (70-232)||(38176415-38176579)
chr3 (67-199)||(34624537-34624668)
chr3 (67-232)||(39145257-39145424)
chr3 (81-199)||(20912187-20912305)
chr3 (61-199)||(52546742-52546880)
chr3 (99-199)||(9496568-9496668)
chr3 (61-199)||(51297086-51297223)
[»] chr5 (15 HSPs)
chr5 (70-232)||(37093937-37094101)
chr5 (70-232)||(4391871-4392035)
chr5 (70-232)||(32891183-32891347)
chr5 (99-199)||(3456790-3456890)
chr5 (67-213)||(41326495-41326641)
chr5 (78-199)||(11739280-11739401)
chr5 (65-199)||(29223469-29223601)
chr5 (120-199)||(34286652-34286731)
chr5 (70-199)||(228032-228161)
chr5 (120-199)||(38614241-38614320)
chr5 (70-199)||(8692517-8692646)
chr5 (138-199)||(40925912-40925973)
chr5 (140-199)||(6614307-6614366)
chr5 (123-232)||(5481414-5481525)
chr5 (156-199)||(31644721-31644764)
[»] chr2 (17 HSPs)
chr2 (67-232)||(13685999-13686166)
chr2 (70-199)||(42263840-42263969)
chr2 (70-231)||(41464926-41465089)
chr2 (99-232)||(3810295-3810430)
chr2 (61-188)||(35676349-35676476)
chr2 (69-199)||(25414922-25415051)
chr2 (67-232)||(28429287-28429451)
chr2 (99-232)||(14941013-14941149)
chr2 (65-227)||(35323506-35323670)
chr2 (65-232)||(45093175-45093340)
chr2 (99-208)||(19898957-19899066)
chr2 (142-232)||(28716343-28716435)
chr2 (70-236)||(29689248-29689407)
chr2 (70-199)||(2752694-2752823)
chr2 (70-160)||(28716439-28716529)
chr2 (104-199)||(40126561-40126656)
chr2 (61-170)||(23454350-23454460)
[»] chr1 (18 HSPs)
chr1 (70-232)||(31032723-31032887)
chr1 (67-230)||(34475905-34476070)
chr1 (70-199)||(29095583-29095712)
chr1 (67-232)||(1270177-1270344)
chr1 (67-232)||(20808953-20809120)
chr1 (120-198)||(2958753-2958831)
chr1 (79-199)||(24135773-24135891)
chr1 (76-213)||(27143605-27143742)
chr1 (70-199)||(42480130-42480259)
chr1 (99-199)||(16254892-16254992)
chr1 (104-232)||(47550834-47550964)
chr1 (55-199)||(9098630-9098771)
chr1 (70-199)||(34807945-34808074)
chr1 (67-186)||(4194772-4194891)
chr1 (67-146)||(41646582-41646660)
chr1 (110-230)||(44714836-44714958)
chr1 (154-199)||(4624438-4624483)
chr1 (153-199)||(45010291-45010337)
[»] chr8 (14 HSPs)
chr8 (70-230)||(29314008-29314170)
chr8 (99-231)||(36473076-36473210)
chr8 (70-199)||(1005598-1005727)
chr8 (67-232)||(41322535-41322702)
chr8 (129-232)||(15561940-15562045)
chr8 (67-199)||(4851739-4851871)
chr8 (104-237)||(11643326-11643462)
chr8 (71-209)||(39112658-39112796)
chr8 (67-199)||(34392114-34392246)
chr8 (120-197)||(8551548-8551625)
chr8 (162-199)||(33888949-33888986)
chr8 (99-199)||(2001686-2001785)
chr8 (119-196)||(37919603-37919680)
chr8 (162-198)||(5549036-5549072)
[»] chr4 (13 HSPs)
chr4 (120-232)||(54358171-54358285)
chr4 (70-232)||(18375417-18375580)
chr4 (67-199)||(24683082-24683214)
chr4 (70-232)||(41633226-41633389)
chr4 (70-188)||(26179282-26179400)
chr4 (76-232)||(37674026-37674184)
chr4 (117-232)||(4512189-4512306)
chr4 (121-199)||(47281593-47281675)
chr4 (139-232)||(17847568-17847663)
chr4 (120-187)||(54021318-54021385)
chr4 (137-199)||(41878592-41878654)
chr4 (104-199)||(47839003-47839098)
chr4 (119-199)||(23348174-23348257)
[»] scaffold0002 (1 HSPs)
scaffold0002 (70-199)||(492675-492804)
[»] scaffold0132 (2 HSPs)
scaffold0132 (81-168)||(556-642)
scaffold0132 (81-168)||(8516-8602)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 29487759 - 29487525
Alignment:
Q  17 aaagcgtatacaac-acatgcaaccatggtgtgtacacaatatttgagtagtgctatatatctagaaaaataatatcatgacatcttaaagaacaaagag 115  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||    
T  29487759 aaagcgtatacaaccacatgcaaccatggtgtgtacacaatatttgagtagtgctatatatctagaaaagtaatatcacgacatcttaaagaataaagag 29487660  T
Q  116 tagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaacaattgccaac--tgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| || |||||  |||    
T  29487659 tagtcaatcacattgcactatttgccacaattaaatgaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaatcaacacttaccaactgtgt 29487560  T
Q  214 ctggaaaaattcttgatgcatttcttctcactcga 248  Q
    |||||||||||||||||||||||||| || |||||    
T  29487559 ctggaaaaattcttgatgcatttcttgtcgctcga 29487525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 7646969 - 7646826
Alignment:
Q  65 agtgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttga 164  Q
    |||||||||| ||||||||||||| |||| ||  |||| || || |||||| || |||||||| ||||||||||||||||||| || || |||||  |||    
T  7646969 agtgctatatctctagaaaaataacatcaagaattctttaaaaataaagagcagccaatcacaatgcactatttgccacaattcaaggatgtgtgactga 7646870  T
Q  165 aaaatagggagtgaacaaataaattatgcaattaacaattgcca 208  Q
    |||||||| | ||||||||||||| |||||||||| | ||||||    
T  7646869 aaaataggaaatgaacaaataaatcatgcaattaaaacttgcca 7646826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 12607221 - 12607123
Alignment:
Q  99 tcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaatt 197  Q
    |||| ||||| |||||| ||||||||||| ||||||||||||||||||| || ||||||||  ||||||||||  ||||||||||||||| ||||||||    
T  12607221 tcttcaagaataaagagcagtcaatcacagtgcactatttgccacaatttaaggaggtgtgactgaaaaatagaaagtgaacaaataaatcatgcaatt 12607123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 232
Target Start/End: Original strand, 25935579 - 25935681
Alignment:
Q  132 actatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaacaattgccaactgt--ctggaaaaattcttga 229  Q
    |||||||| ||||||| || ||||||||| ||||||||||  ||||||  ||||||| ||| |||||| | |||||| ||||  || |||||||||||||    
T  25935579 actatttgtcacaatttaaggaggtgtggctgaaaaatagaaagtgaaagaataaatcatgtaattaaaacttgccagctgtgtcttgaaaaattcttga 25935678  T
Q  230 tgc 232  Q
    |||    
T  25935679 tgc 25935681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 28898477 - 28898443
Alignment:
Q  165 aaaatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||||||||||||||||||||| ||||||||||    
T  28898477 aaaatagggagtgaacaaataaatcatgcaattaa 28898443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 67 - 232
Target Start/End: Complemental strand, 27425946 - 27425779
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| | ||||||||||| |||| ||  |||||||||| |||||  ||||||||||| |||| |||||||||||||| || ||| |||||||||||    
T  27425946 tgctatatctttagaaaaataacatcaagaattcttaaagaataaagaacagtcaatcacaatgcattatttgccacaattcaaggagttgtggttgaaa 27425847  T
Q  167 aatagggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    |||||| ||||||||||||||| |||||||||| | ||||||||  ||||| |||||||| |||||||    
T  27425846 aataggaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattgttgatgc 27425779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 22326862 - 22326996
Alignment:
Q  65 agtgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttga 164  Q
    |||||||||| | ||||||||||| |||| ||  |||| ||||| ||||||  |||||||||| || |||||||||||||||| |  ||||||||  |||    
T  22326862 agtgctatatctttagaaaaataacatcaagaattcttcaagaagaaagagccgtcaatcacaatgtactatttgccacaattcagggaggtgtgactga 22326961  T
Q  165 aaaatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||||  ||||||||||||||| ||||||||||    
T  22326962 aaaatagaaagtgaacaaataaatcatgcaattaa 22326996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 23992140 - 23992011
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| |||| ||| |||| |||| ||  |||| ||||| |||||| || | |||||| ||||||||||||||||||| || ||||||||| ||||||||    
T  23992140 tatatctctacaaatataacatcaagaattcttcaagaataaagagcagcctatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaat 23992041  T
Q  170 agggagtgaacaaataaattatgcaattaa 199  Q
    ||  |||||||||| | || ||||||||||    
T  23992040 agaaagtgaacaaaaatatcatgcaattaa 23992011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 42195427 - 42195515
Alignment:
Q  111 aagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    ||||| ||| |||| || |||||||||| |||||||| || ||||||||  ||||||||| ||||||||||||||||| ||||||||||    
T  42195427 aagagcagttaatctcaatgcactatttaccacaattcaaggaggtgtgtctgaaaaataaggagtgaacaaataaatcatgcaattaa 42195515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 208
Target Start/End: Original strand, 8307531 - 8307669
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||| ||||||||||||||||| |||| ||  | || ||||| |||||  ||||||||| | ||||||||| ||||||||| |   |||||||| | |||    
T  8307531 tgctgtatatctagaaaaataacatcaagaattttttaagaataaagacgagtcaatcataatgcactattagccacaattca---aggtgtggctcaaa 8307627  T
Q  167 aatagggagtgaacaaataaattatgcaattaacaattgcca 208  Q
    |||||| ||||||||||||||| ||||| |||| | ||||||    
T  8307628 aataggaagtgaacaaataaatcatgcagttaaaatttgcca 8307669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 41405904 - 41405803
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| |||||||||  ||||||| ||  |||| ||||| |||||| ||||  ||||| ||||||||||||||||||  || ||||| ||||||||||||    
T  41405904 tatatctctagaaaaggaatatcacgatctcttcaagaataaagaggagtcggtcacaatgcactatttgccacaatacaaggaggtatggttgaaaaat 41405805  T
Q  170 ag 171  Q
    ||    
T  41405804 ag 41405803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 17611848 - 17611980
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    ||||||||  |||||||||||| |||| ||  |||| ||||| |||||  |  |||||| | || | |||||||||||||| || ||| ||||| | |||    
T  17611848 tgctatatcgctagaaaaataacatcaagaattcttcaagaataaagaacaaccaatcataatgaattatttgccacaattcaaggagatgtggctaaaa 17611947  T
Q  167 aatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||| |||||| |||||||| || |||||||    
T  17611948 aataggaagtgaataaataaatcatacaattaa 17611980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 521957 - 521791
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    ||||||||||||||| |||||| |||| ||  |||| ||||| |||||| || |||||||| ||||||||||||||||||| || ||||||||| |||||    
T  521957 tgctatatatctagataaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaa 521858  T
Q  167 aatagggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatg 231  Q
    |||||| ||||||||||||||| |||||||||| | ||| ||||  |||||  ||||||||||||||    
T  521857 aataggaagtgaacaaataaatcatgcaattaaaacttgacaactgtgtcttaaaaaattcttgatg 521791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 213
Target Start/End: Original strand, 36517520 - 36517666
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    ||||||||||||||| |||||| |||| ||  |||| ||||| |||||| ||||||||||| ||||||||||||||||||| || ||||||||  | |||    
T  36517520 tgctatatatctagacaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaattcaaggaggtgtgaataaaa 36517619  T
Q  167 aatagggagtgaacaaataaattatgcaattaacaattgccaactgt 213  Q
    |||||| ||||||||||||||| |||||||||| | |||||||||||    
T  36517620 aataggaagtgaacaaataaatcatgcaattaaaacttgccaactgt 36517666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 45166235 - 45166399
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  |||| || || |||||| || |||||||| ||||||||||||||||||| || |||| |||| ||||||||    
T  45166235 tatatctctagaaaaataacatcaagaattcttcaataataaagagcagccaatcacaatgcactatttgccacaattcaaggaggcgtggctgaaaaat 45166334  T
Q  170 agggagtgaacaaataaattatgcaattaacaattgccaact--gtctggaaaaattcttgatgc 232  Q
    |||||||| |||||||||| |||||||||| | |||||||||  |||| ||||||||||||||||    
T  45166335 agggagtggacaaataaatcatgcaattaaaatttgccaactgcgtcttgaaaaattcttgatgc 45166399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 60 - 237
Target Start/End: Complemental strand, 1561455 - 1561276
Alignment:
Q  60 tgagtagtgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtg 159  Q
    |||| |||| ||||| ||||||||||||| |||| ||  |||| ||||| |||||| |  |||||||| ||||||||||||||||||| || ||||||||    
T  1561455 tgagcagtgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtg 1561356  T
Q  160 gttgaaaaatagggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgcatttc 237  Q
    | ||||||||||| ||||||||||||||| |||||||| | | ||| || |  |||||| ||||||||||||| ||||||    
T  1561355 gctgaaaaataggaagtgaacaaataaatcatgcaattgaaacttgtcagctgtgtctgaaaaaattcttgattcatttc 1561276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 50613067 - 50612935
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| ||||||||||||| |||| ||  |||| ||||| |||||| || |||||||| ||||||||||||||||||| || ||||||||  |||||    
T  50613067 tgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgactgaaa 50612968  T
Q  167 aatagggagtgaacaaataaattatgcaattaa 199  Q
    ||||   ||||||||||||||||||||||||||    
T  50612967 aatataaagtgaacaaataaattatgcaattaa 50612935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 232
Target Start/End: Complemental strand, 23643163 - 23643005
Alignment:
Q  76 tctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggag 175  Q
    ||||||||||||| |||| ||  |||| ||||| ||| | |||||||||||| ||||||||||||||||||| || ||||||||  | ||||||||| ||    
T  23643163 tctagaaaaataacatcaagaattcttcaagaataaatattagtcaatcacaatgcactatttgccacaattcaaggaggtgtgactaaaaaataggaag 23643064  T
Q  176 tgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    ||||||||||||||||| |||||| | ||| || |  ||||| ||||||||||||||||    
T  23643063 tgaacaaataaattatggaattaaaatttgtcagctgtgtcttgaaaaattcttgatgc 23643005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 31788314 - 31788432
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  |||| ||||| |||||| || |||||||| |||||||||| |||||||| || |||||||| |||||||||    
T  31788314 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttaccacaattcaaggaggtgtgattgaaaaat 31788413  T
Q  170 agggagtgaacaaataaat 188  Q
    ||| |||||||||||||||    
T  31788414 aggaagtgaacaaataaat 31788432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 38176579 - 38176415
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||  |||| ||  |||| ||||| |||||| || ||||| || ||||||||||||| ||||| || ||||||||| ||||||||    
T  38176579 tatatctctagaaaaatatcatcaagaattcttcaagaataaagagcagccaatcgcaatgcactatttgcctcaattcaaggaggtgtggctgaaaaat 38176480  T
Q  170 agggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    | | ||||||||||||||  |||||||||| | ||||||||  ||||| ||||||||||| ||||    
T  38176479 atgaagtgaacaaataaaacatgcaattaaaacttgccaactgtgtcttgaaaaattcttaatgc 38176415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 34624668 - 34624537
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| ||||||||||||| || | ||  |||| ||||| |||||| || |||||||| |||||||||| ||||||||  | || |||||| |||||    
T  34624668 tgctatatctctagaaaaataacataa-gaattcttcaagaataaagagcagccaatcacaatgcactatttaccacaatttgaggaagtgtggctgaaa 34624570  T
Q  167 aatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||| ||||||||||||||| ||||||||||    
T  34624569 aataggaagtgaacaaataaatcatgcaattaa 34624537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 39145257 - 39145424
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| |||||||||||||||||| ||  |||| ||||| ||| || || |||| ||| |||||||||||| |||||| |||||||| ||  |||||    
T  39145257 tgctatatctctagaaaaataatatcaagaattctttaagaataaaaagcagccaattacaatgcactatttgctacaattcaatgaggtatgactgaaa 39145356  T
Q  167 aatagggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    |||||| | |||||||| |||| || ||||||| | ||| ||||  ||||| || |||||||||||||    
T  39145357 aataggaaatgaacaaagaaatcatacaattaaaacttgacaactgtgtcttgacaaattcttgatgc 39145424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 20912187 - 20912305
Alignment:
Q  81 aaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaac 180  Q
    |||||||| |||| ||  |||| ||||| |||||| ||||||| ||| ||||||||||| || |||| || ||||||||  ||||||||||| |||||||    
T  20912187 aaaaataacatcaagaattcttcaagaataaagagcagtcaataacaatgcactatttgtcataatttaaggaggtgtgactgaaaaataggaagtgaac 20912286  T
Q  181 aaataaattatgcaattaa 199  Q
    |||||||| ||||||||||    
T  20912287 aaataaatcatgcaattaa 20912305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 52546742 - 52546880
Alignment:
Q  61 gagtagtgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtgg 160  Q
    ||||| || ||||| | ||||||||||| ||||  |  |||| ||||| |||||| || |||||||| ||  ||||||| ||||||| |||||||||||     
T  52546742 gagtaatgatatatctttagaaaaataacatcaaaaattcttcaagaataaagagcagccaatcacaatgtgctatttgtcacaattcaatgaggtgtga 52546841  T
Q  161 ttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
     ||||||||||| | ||||||||||||||||||||||||    
T  52546842 gtgaaaaataggaaatgaacaaataaattatgcaattaa 52546880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 9496568 - 9496668
Alignment:
Q  99 tcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaatta 198  Q
    |||| ||||| ||||||||| |||||||| | |||| |||||||||||  |  | ||||| | ||||||||||||||||||||||||||| ||||| |||    
T  9496568 tcttcaagaataaagagtagccaatcacaattcactgtttgccacaatacacagtggtgttgctgaaaaatagggagtgaacaaataaatcatgcagtta 9496667  T
Q  199 a 199  Q
    |    
T  9496668 a 9496668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 51297223 - 51297086
Alignment:
Q  61 gagtagtgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtgg 160  Q
    ||||| || ||||| ||||||||||||| |||| ||  |||| ||| | |||||  || ||| |||| ||||||||||||||||||| ||  |||| ||     
T  51297223 gagtaatgttatatctctagaaaaataacatcaagag-tcttcaagcataaagaacagccaaccacaatgcactatttgccacaattcaaaaaggtatga 51297125  T
Q  161 ttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
     ||||||||||  ||||||||||||||| ||||||||||    
T  51297124 ctgaaaaatagaaagtgaacaaataaatcatgcaattaa 51297086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 37094101 - 37093937
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| ||||  |  |||| ||||| |||||| |||||||||||||| ||||||||| |||||| || ||||||||  ||||||||    
T  37094101 tatatctctagaaaaataacatcaacaattcttcaagaataaagagcagtcaatcacattgtactatttgcaacaattcaaggaggtgtgactgaaaaat 37094002  T
Q  170 agggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    ||| |||||||||||||||||||||||||| | ||| ||||  ||||| ||||||||||||||||    
T  37094001 aggaagtgaacaaataaattatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgc 37093937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 4392035 - 4391871
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  |||| ||||| |||||| || |||| ||| |||||| |||||||||||| || ||| ||||| ||||||||    
T  4392035 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaattacaatgcactgtttgccacaattcaaggagctgtggctgaaaaat 4391936  T
Q  170 agggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    ||| |||||||||||||||||||||||||| | |||||| |  ||||| ||||||||||||||||    
T  4391935 aggaagtgaacaaataaattatgcaattaaaacttgccagctgtgtcttgaaaaattcttgatgc 4391871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 32891183 - 32891347
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  |||| ||||| ||| || || |||||||| ||||||||||||||||||| || ||||||||| | ||| ||    
T  32891183 tatatctctagaaaaataacatcaagaattcttcaagaataaaaagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaagat 32891282  T
Q  170 agggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    ||| ||||||||||||||| |||||||||| | ||| ||||  ||||| |||||||| |||||||    
T  32891283 aggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaattgttgatgc 32891347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 3456790 - 3456890
Alignment:
Q  99 tcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaatta 198  Q
    |||| ||||| |||||| ||||| ||||| ||||||||||||||||||| || ||||||||  ||||||||||| ||||||||||||||| |||||||||    
T  3456790 tcttcaagaataaagagcagtcactcacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataggaagtgaacaaataaatcatgcaatta 3456889  T
Q  199 a 199  Q
    |    
T  3456890 a 3456890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 213
Target Start/End: Complemental strand, 41326641 - 41326495
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| ||||||||||||| |||| ||  |||| ||||| |||||| || |||||||| ||  ||||||| ||||||| || ||||||||| |||||    
T  41326641 tgctatatctctagaaaaataacatcacgatctcttcaagaataaagagcagccaatcacaatgtgctatttgacacaattcaaggaggtgtggctgaaa 41326542  T
Q  167 aatagggagtgaacaaataaattatgcaattaacaattgccaactgt 213  Q
    |||||| ||| |||||||| |  ||||||| |||| |||||||||||    
T  41326541 aataggaagtaaacaaatacacgatgcaataaacacttgccaactgt 41326495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 11739401 - 11739280
Alignment:
Q  78 tagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtg 177  Q
    ||||||||||| |||| ||  |||| ||||| ||| || ||  ||||| | |||||| |||||||||||| || ||||||||| |||||||||||  |||    
T  11739401 tagaaaaataacatcaagaattcttcaagaataaaaagcaggtaatcataatgcactgtttgccacaattcaaggaggtgtggctgaaaaataggaggtg 11739302  T
Q  178 aacaaataaattatgcaattaa 199  Q
    ||||||||||||||||||||||    
T  11739301 aacaaataaattatgcaattaa 11739280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 29223469 - 29223601
Alignment:
Q  65 agtgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttga 164  Q
    |||||||||| | |||||||||||||||| ||  |||| || |   ||||| |||||| |||| ||||||||||||||||||| || ||||||||  |||    
T  29223469 agtgctatatctttagaaaaataatatcaagaattcttcaaaat--aagagcagtcaaccacaatgcactatttgccacaattcaaggaggtgtgactga 29223566  T
Q  165 aaaatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||| | |||| |||||||||| ||||||||||    
T  29223567 aaaataagaagtgtacaaataaatcatgcaattaa 29223601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 34286652 - 34286731
Alignment:
Q  120 caatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||||  |||||||||||||||||||||   |||||||| ||||||||||| | ||||||||||||| ||||||||||    
T  34286652 caatcacgatgcactatttgccacaattaatgaaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaattaa 34286731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 228032 - 228161
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  | || ||||| |||||  | ||||||||| |||||||||| |||||||| || ||||||||  |||||| |    
T  228032 tatatctctagaaaaataacatcaagaatttttcaagaataaagaacaatcaatcacaatgcactatttaccacaattcaaggaggtgtgactgaaaagt 228131  T
Q  170 agggagtgaacaaataaattatgcaattaa 199  Q
    ||  |||||||||||| || ||||||||||    
T  228132 agaaagtgaacaaatatatcatgcaattaa 228161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 38614320 - 38614241
Alignment:
Q  120 caatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||||| ||||||| ||||||||||| ||  || ||||| ||||||||||| ||| ||||||||||| ||||||||||    
T  38614320 caatcacaatgcactaattgccacaattcaagaagatgtggctgaaaaataggaagtaaacaaataaatcatgcaattaa 38614241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 8692517 - 8692646
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  |||| ||||| ||| || |  |||||| | || |||||||||||||||| || || ||||||  |||||||    
T  8692517 tatatctctagaaaaataacatcaagaattcttcaagaataaatagcatccaatcataatgtactatttgccacaattcaaggaagtgtggcagaaaaat 8692616  T
Q  170 agggagtgaacaaataaattatgcaattaa 199  Q
    ||  |||||| |||||||| ||||||||||    
T  8692617 agaaagtgaataaataaatcatgcaattaa 8692646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 40925912 - 40925973
Alignment:
Q  138 tgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||||||| || ||||||||| ||||||||||| ||||||||||||||| || |||||||    
T  40925912 tgccacaattcaaagaggtgtggctgaaaaataggaagtgaacaaataaatcatacaattaa 40925973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 6614366 - 6614307
Alignment:
Q  140 ccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||||| || ||||||||  ||||||||||| ||||||||||||||| ||||||||||    
T  6614366 ccacaattcaaggaggtgtgcctgaaaaataggaagtgaacaaataaatcatgcaattaa 6614307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 5481414 - 5481525
Alignment:
Q  123 tcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaa 220  Q
    ||||| |||| |||||||||||||| |  ||| ||||| |||||||||   ||||||||||||||| ||||| |||| | || |||||  |||||  |||    
T  5481414 tcacaatgcattatttgccacaattcatagagatgtggctgaaaaataaaaagtgaacaaataaatcatgcagttaaaatttaccaactgtgtcttaaaa 5481513  T
Q  221 aattcttgatgc 232  Q
    ||||||||||||    
T  5481514 aattcttgatgc 5481525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 31644721 - 31644764
Alignment:
Q  156 tgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||    
T  31644721 tgtggttgaaaaataggaagtgaacaaataaaccatgcaattaa 31644764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 13685999 - 13686166
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| ||||||||||||| |||| ||  | || ||||| |||||| || |||||||| ||||||| ||||||||||| || ||||||||| |||||    
T  13685999 tgctatatctctagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgcactacttgccacaattcaaggaggtgtggctgaaa 13686098  T
Q  167 aatagggagtgaacaaataaattatgcaattaacaattgccaa--ctgtctggaaaaattcttgatgc 232  Q
    |||||| ||||||||||||||| |||||||||| | |||||||   |||||  |||||||||||||||    
T  13686099 aataggaagtgaacaaataaatcatgcaattaaaacttgccaattgtgtcttaaaaaattcttgatgc 13686166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 42263840 - 42263969
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  |||| ||||| |||||| || |||||||| ||||| ||||| ||||||| || ||||||||| ||||||||    
T  42263840 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggtgtggctgaaaaat 42263939  T
Q  170 agggagtgaacaaataaattatgcaattaa 199  Q
    ||| | ||||||||||||||||||||||||    
T  42263940 aggaaatgaacaaataaattatgcaattaa 42263969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 231
Target Start/End: Complemental strand, 41465089 - 41464926
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  |||| ||||| |||| | ||   |||||| ||||||||||||| ||||| || ||||||||||||||||||    
T  41465089 tatatctctagaaaaataacatcaagaattcttcaagaataaagtgcagcggatcacaatgcactatttgccgcaattcaaggaggtgtggttgaaaaat 41464990  T
Q  170 agggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatg 231  Q
    ||  ||||||||||||||| |||||||||| | ||| ||||  ||||| |||||||||||||||    
T  41464989 agaaagtgaacaaataaatcatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatg 41464926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 3810430 - 3810295
Alignment:
Q  99 tcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaatta 198  Q
    |||| ||||| ||||||||| |||| ||| ||||||||||||||||||| || ||||||||  ||||||||| | ||||||||||||||| |||||||||    
T  3810430 tcttcaagaataaagagtagccaattacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataagaagtgaacaaataaatcatgcaatta 3810331  T
Q  199 acaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    | | |||||| |  ||||| ||||| ||||||||||    
T  3810330 aaacttgccagctgtgtcttgaaaatttcttgatgc 3810295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 35676476 - 35676349
Alignment:
Q  61 gagtagtgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtgg 160  Q
    |||||||| ||||| |||| |||||||| |||| ||  |||| ||||| |||||| |||||| |||| ||||||||||||||||||| || ||||||||     
T  35676476 gagtagtgttatatctctaaaaaaataacatcaagaattctttaagaataaagagcagtcaaccacaatgcactatttgccacaattcaaggaggtgtga 35676377  T
Q  161 ttgaaaaatagggagtgaacaaataaat 188  Q
     ||||||||| | |||||||||||||||    
T  35676376 ctgaaaaatatgaagtgaacaaataaat 35676349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 199
Target Start/End: Original strand, 25414922 - 25415051
Alignment:
Q  69 ctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaa 168  Q
    |||||||||||||||| ||| |||| ||  |||| ||||| |||||  ||||||||||| ||||||||||||||||||| || ||||| ||| |||||||    
T  25414922 ctatatatctagaaaa-taacatcaagaattcttcaagaataaagaacagtcaatcacaatgcactatttgccacaattcaaggaggtatggctgaaaaa 25415020  T
Q  169 tagggagtgaacaaataaattatgcaattaa 199  Q
     ||  ||||||||||||||| ||||||||||    
T  25415021 aagaaagtgaacaaataaatcatgcaattaa 25415051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 28429287 - 28429451
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| | |||||||||||||||| ||  |||| ||||| |||||| || ||| |||| |||| ||||||||| |||| || ||||||||  |||||    
T  28429287 tgctatatctttagaaaaataatatcaagaattcttcaagaataaagagcagccaaacacaatgcattatttgccataatttaaggaggtgtgactgaaa 28429386  T
Q  167 aatagggagtgaacaaataaattatgcaattaacaattgccaactgtctggaaaaattcttgatgc 232  Q
    |||| | ||||||||||||||| |||||||||| | ||| | | ||||  ||||||||||||||||    
T  28429387 aataagaagtgaacaaataaatcatgcaattaaaacttgtc-agtgtcatgaaaaattcttgatgc 28429451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 14941149 - 14941013
Alignment:
Q  99 tcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtg-gttgaaaaatagggagtgaacaaataaattatgcaatt 197  Q
    |||| ||||| |||||| ||||||||||| ||||||||||||||||||| || ||||||||  | |||||||| | ||||||||||||||| ||| ||||    
T  14941149 tcttcaagaataaagagcagtcaatcacaatgcactatttgccacaattcaaagaggtgtgactcgaaaaataagaagtgaacaaataaatcatgaaatt 14941050  T
Q  198 aacaattgcca--actgtctggaaaaattcttgatgc 232  Q
    || | ||||||    ||||| ||||||||||||||||    
T  14941049 aaaacttgccagttgtgtcttgaaaaattcttgatgc 14941013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 35323670 - 35323506
Alignment:
Q  65 agtgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttga 164  Q
    |||||||||| | ||||||||||| ||||  |  |||| ||||| |||||  ||||||||||| | ||||||||||||||||| |||||||||||| |||    
T  35323670 agtgctatatttatagaaaaataacatcaaaaattcttcaagaataaagaacagtcaatcacaatacactatttgccacaattcaatgaggtgtggctga 35323571  T
Q  165 aaaatagggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattctt 227  Q
    ||||||   | |||||| |||||| ||| |||||| | ||| ||||  |||||| ||||||||||    
T  35323570 aaaataaaaactgaacatataaatcatgtaattaaaacttgtcaactgtgtctgaaaaaattctt 35323506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 232
Target Start/End: Complemental strand, 45093340 - 45093175
Alignment:
Q  65 agtgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttga 164  Q
    |||||||||| ||||||||||||| ||||  |  |||| ||||| ||||||    |||||||| ||||||||||||||||||| || ||||| ||  |||    
T  45093340 agtgctatatctctagaaaaataacatcaataattcttcaagaataaagag----caatcacaatgcactatttgccacaattcaaggaggtatgactga 45093245  T
Q  165 aaaatagggagtgaacaaataaattatgcaattaacaattgccaactg--tctggaaaaattcttgatgc 232  Q
    |||||||| ||| ||||| ||||| |||||||||| | || |||||||  |||  |||||||||||||||    
T  45093244 aaaataggaagtaaacaattaaatcatgcaattaaaatttcccaactgtatcttaaaaaattcttgatgc 45093175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 19898957 - 19899066
Alignment:
Q  99 tcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaatta 198  Q
    |||| ||||| |||||| || |||||||| |||| |||||| ||||||| || ||||| | | |||||| |||| ||||||||||||||| |||||||||    
T  19898957 tcttcaagaataaagagcagccaatcacaatgcattatttgtcacaattcaaggaggtattgctgaaaattaggaagtgaacaaataaatcatgcaatta 19899056  T
Q  199 acaattgcca 208  Q
    | | ||||||    
T  19899057 aaacttgcca 19899066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 28716435 - 28716343
Alignment:
Q  142 acaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaacaattgcca--actgtctggaaaaattcttgatgc 232  Q
    |||||| || ||||||||| ||||||||||| ||||||||||||||| |||||||||| | ||||||    ||||| ||||||||||||||||    
T  28716435 acaattcaaagaggtgtggctgaaaaataggaagtgaacaaataaataatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgc 28716343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 29689407 - 29689248
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  | || ||||| |||||| |   ||||||| |||||||||||| | |||| || ||||| ||  ||||||||    
T  29689407 tatatctctagaaaaataacatcaagaattttttaagaataaagagca---aatcacaatgcactatttgctataattcaaggaggtttgactgaaaaat 29689311  T
Q  170 agggagtgaacaaataaattatgcaattaacaattgccaactgtctggaaaaattcttgatgcattt 236  Q
    ||| ||||||| ||||||| |||||||||| || ||   | |||||| |||||||||||||||||||    
T  29689310 aggaagtgaactaataaatcatgcaattaa-aactg---attgtctgaaaaaattcttgatgcattt 29689248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 2752823 - 2752694
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| || | ||  |||| ||||| ||| || || |||||||| ||||||||||||||||||| || ||| | ||  ||||||||    
T  2752823 tatatttctagaaaaataacattaagaattcttcaagaaaaaatagcagccaatcacaatgcactatttgccacaattcaaggagatctgactgaaaaat 2752724  T
Q  170 agggagtgaacaaataaattatgcaattaa 199  Q
    | | |||||| |||||||| || |||||||    
T  2752723 aagaagtgaataaataaatcatacaattaa 2752694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 28716529 - 28716439
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtgg 160  Q
    ||||| ||||||||||| | |||| ||  |||| ||||| ||| ||||| | |||||| ||||||||||||||||||| || |||||||||    
T  28716529 tatatctctagaaaaatgacatcaagaattcttcaagaataaatagtagccgatcacaatgcactatttgccacaattcaaagaggtgtgg 28716439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 40126656 - 40126561
Alignment:
Q  104 aagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    ||||| |||||| ||||| ||| | ||||||||||  ||||||| ||  || | | ||||||||||||| ||||||||||||||| || |||||||    
T  40126656 aagaataaagagcagtcattcataatgcactatttatcacaatttaagaagatatagttgaaaaataggaagtgaacaaataaatcatacaattaa 40126561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 23454460 - 23454350
Alignment:
Q  61 gagtagtgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcact-atttgccacaattaaatgaggtgtg 159  Q
    ||||| |||||||| ||||||||||||| || |  |  |||| ||||| |||||| ||||||||||| |||||| ||||| ||||||| || |||||| |    
T  23454460 gagtaatgctatatctctagaaaaataacataaaaaattcttcaagaataaagagcagtcaatcacaatgcactaatttgacacaattcaaggaggtgcg 23454361  T
Q  160 gttgaaaaata 170  Q
      |||||||||    
T  23454360 actgaaaaata 23454350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 31032887 - 31032723
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||  |||| ||  |||| ||||| |||||  ||||||||||| |||||||||||||||| || || ||||||||| ||||||||    
T  31032887 tatatctctagaaaaatatcatcaagaattcttcaagaataaagatcagtcaatcacaatgcactatttgccacagttcaaggaggtgtggctgaaaaat 31032788  T
Q  170 agggagtgaacaaataaattatgcaattaacaattgccaactg--tctggaaaaattcttgatgc 232  Q
    ||  ||||||||||||||| |||||||||| | ||| ||||||  ||| ||||||||||||||||    
T  31032787 agaaagtgaacaaataaatcatgcaattaaaacttgtcaactgtatcttgaaaaattcttgatgc 31032723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 230
Target Start/End: Original strand, 34475905 - 34476070
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| ||||||||||||| |||| ||  |||| ||||| |||||| || |||||||| |||||||| |||| ||||| || ||||||||| |||||    
T  34475905 tgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatctgccccaattcaaggaggtgtggctgaaa 34476004  T
Q  167 aatagggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgat 230  Q
    |||||| ||||||||||| ||| |||||||||| | ||| || |  ||||| ||||||||||||||    
T  34476005 aataggaagtgaacaaatcaatcatgcaattaaaacttgtcagctttgtcttgaaaaattcttgat 34476070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 29095712 - 29095583
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  |||| ||||| |||||| || |||||||| ||||||||||||||||||| || ||||||||| ||||||||    
T  29095712 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaat 29095613  T
Q  170 agggagtgaacaaataaattatgcaattaa 199  Q
    ||| |||||||||| | || ||||||||||    
T  29095612 aggaagtgaacaaagatatcatgcaattaa 29095583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 1270177 - 1270344
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| ||||||||||||| |||| ||  |||| ||||| |||||| |  ||||| || ||||||||||||||||||| ||  |||||||| |||||    
T  1270177 tgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatctcaatgcactatttgccacaattcaagaaggtgtggctgaaa 1270276  T
Q  167 aatagggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    |||||| |||||| ||||||||  ||||||||| | ||| ||||  ||||| |||||||| |||||||    
T  1270277 aataggaagtgaataaataaatcgtgcaattaaaacttgtcaactgtgtcttgaaaaatttttgatgc 1270344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 20808953 - 20809120
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| ||||||||||||| |||| ||  |||| ||||| |||||| ||||||||||| |||| |||||||||||||| || ||| ||||| |||||    
T  20808953 tgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcattatttgccacaattcaaggagatgtggctgaaa 20809052  T
Q  167 aatagggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    | |||| ||||||| ||||||  ||| |||||| | |||||| |  | ||| ||||||||||||||||    
T  20809053 actaggaagtgaacgaataaaccatgtaattaaaacttgccacccgtatcttgaaaaattcttgatgc 20809120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 2958831 - 2958753
Alignment:
Q  120 caatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaatta 198  Q
    |||||||| |||||||||||||| |||| || ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  2958831 caatcacaatgcactatttgccaaaattcaaggaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaatta 2958753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 24135773 - 24135891
Alignment:
Q  79 agaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtga 178  Q
    |||||||||| |||| ||  |||| ||||| |||||| || |||||||| ||||  ||||||||||||| || ||||||||| ||||||||||| |||||    
T  24135773 agaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaagtga 24135870  T
Q  179 acaaataaattatgcaattaa 199  Q
    |||||||||| ||||||||||    
T  24135871 acaaataaatcatgcaattaa 24135891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 213
Target Start/End: Complemental strand, 27143742 - 27143605
Alignment:
Q  76 tctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggag 175  Q
    ||||||||||||||||||  |  |||| ||||| ||| ||  |||||||||| || | ||||||| |||||| || |||||||| |||||||||||| ||    
T  27143742 tctagaaaaataatatcaccatctctttaagaataaaaagccgtcaatcacaatgtattatttgctacaatttaaagaggtgtgattgaaaaataggaag 27143643  T
Q  176 tgaacaaataaattatgcaattaacaattgccaactgt 213  Q
    | |||||||| || || |||| |||| |||||||||||    
T  27143642 taaacaaatacataatacaataaacacttgccaactgt 27143605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 42480130 - 42480259
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| |||| |||||||| |||| ||  |||| ||||| ||| || ||||||| ||| || | ||||| |||||||| |||||||||||| ||||||||    
T  42480130 tatatctctacaaaaataacatcaagaattcttcaagaataaatagcagtcaattacaatgtattatttaccacaattcaatgaggtgtggctgaaaaat 42480229  T
Q  170 agggagtgaacaaataaattatgcaattaa 199  Q
    ||  | |||| |||||||||||||||||||    
T  42480230 agaaaatgaataaataaattatgcaattaa 42480259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 16254892 - 16254992
Alignment:
Q  99 tcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaatta 198  Q
    |||| ||||| |||||  || |||||||| |||||||||||||| |||| || ||||||||| |||| |||||| ||||||||||||||| || ||||||    
T  16254892 tcttcaagaataaagatcagccaatcacaatgcactatttgccataatttaaggaggtgtggctgaataataggaagtgaacaaataaatcatacaatta 16254991  T
Q  199 a 199  Q
    |    
T  16254992 a 16254992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 232
Target Start/End: Original strand, 47550834 - 47550964
Alignment:
Q  104 aagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaacaat 203  Q
    ||||| |||||| ||  ||| ||| ||||||||||||||||||| || ||||||||  | ||||||||| | |||||| |||||| |||||||||| | |    
T  47550834 aagaataaagagcagcaaattacaatgcactatttgccacaatttaaggaggtgtgactaaaaaataggaaatgaacatataaatcatgcaattaaaact 47550933  T
Q  204 tgccaactg--tctggaaaaattcttgatgc 232  Q
    ||||| |||  ||| ||||||||||||||||    
T  47550934 tgccagctgtttcttgaaaaattcttgatgc 47550964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 199
Target Start/End: Complemental strand, 9098771 - 9098630
Alignment:
Q  55 atatttgagtagtgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgag 154  Q
    |||| |||||| || ||||| ||||||||||||| |||| ||  |||| ||||| |||||| || |||||||| |||||||| |||||   || ||  ||    
T  9098771 atatatgagtaatgatatatctctagaaaaataacatcaagaattctttaagaataaagagcagccaatcacaatgcactatctgcca---ttcaagaag 9098675  T
Q  155 gtgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||| |||| |||| | ||||||||||||||| ||||||||||    
T  9098674 gtgtggctgaataatacgaagtgaacaaataaatcatgcaattaa 9098630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 34807945 - 34808074
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||| ||||||||| |||| ||  |||| || || |||||| ||||||||||| || |||||||  || |||| || ||||||||| ||||||||    
T  34807945 tatatctctcgaaaaataacatcaagaattcttcaaaaataaagagcagtcaatcacaatgtactatttatcataatttaaggaggtgtggctgaaaaat 34808044  T
Q  170 agggagtgaacaaataaattatgcaattaa 199  Q
    | | |||||| |||||||| ||||||||||    
T  34808045 atgaagtgaataaataaatcatgcaattaa 34808074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 186
Target Start/End: Original strand, 4194772 - 4194891
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| ||||||||||||| |||| ||  |||| ||||| |||||  ||||||||||| |  ||||||| ||| |||| || ||| | ||  |||||    
T  4194772 tgctatatctctagaaaaataacatcaagaattcttcaagaataaagaacagtcaatcacaatatactatttaccataattcaaagagatatgactgaaa 4194871  T
Q  167 aatagggagtgaacaaataa 186  Q
    |||||| |||||||||||||    
T  4194872 aataggaagtgaacaaataa 4194891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 41646582 - 41646660
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaat 146  Q
    |||| ||| ||||||||||||| |||| ||  |||| ||||| |||||| ||||||||||| ||||||||||||||||||    
T  41646582 tgctgtatctctagaaaaataacatca-gaattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaat 41646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 44714958 - 44714836
Alignment:
Q  110 aaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaacaattgccaa 209  Q
    |||||| ||||||||||| |||| |||||||||||||| || ||| ||||| |||||||||   | | || |||||||| || ||||||| | |||||||    
T  44714958 aaagagcagtcaatcacaatgcattatttgccacaattcaacgagatgtggctgaaaaataaaaaataaaaaaataaatcatacaattaaaacttgccaa 44714859  T
Q  210 c--tgtctggaaaaattcttgat 230  Q
    |  | ||| ||||||||||||||    
T  44714858 ctatatcttgaaaaattcttgat 44714836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 4624438 - 4624483
Alignment:
Q  154 ggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  4624438 ggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaa 4624483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 45010291 - 45010337
Alignment:
Q  153 aggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||||| ||||||||| | ||||||||||||||| ||||||||||    
T  45010291 aggtgtggctgaaaaataagaagtgaacaaataaatcatgcaattaa 45010337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 29314008 - 29314170
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  | || ||||| |||||| ||||||||||| ||||||||||||||||||| || ||||||||  ||||||||    
T  29314008 tatatctctagaaaaataacatcaagaattgtttaagaataaagagaagtcaatcacaatgcactatttgccacaatttaaggaggtgtgactgaaaaat 29314107  T
Q  170 agggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgat 230  Q
    ||  |||| |||||||||| |||||||||| | || |||||  ||||| ||||||||||||||    
T  29314108 agaaagtggacaaataaataatgcaattaaaacttaccaactgtgtcttgaaaaattcttgat 29314170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 36473210 - 36473076
Alignment:
Q  99 tcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaatta 198  Q
    |||| ||||| |||||| ||||||||||| | ||||||||| ||||||| || ||||||||| ||||||||||| ||||||||||||||| |||||||||    
T  36473210 tcttcaagaataaagagcagtcaatcacagtacactatttgacacaatttaaggaggtgtggctgaaaaataggaagtgaacaaataaatcatgcaatta 36473111  T
Q  199 acaattgccaa--ctgtctggaaaaattcttgatg 231  Q
    | | || ||||   ||||| |||||||||||||||    
T  36473110 aaacttaccaattgtgtcttgaaaaattcttgatg 36473076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 1005598 - 1005727
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| |||||||||||||||| |  |  |||||||||| |||||||| ||||| | | ||||| ||||| ||||||| || ||||||||  ||||||||    
T  1005598 tatatctctagaaaaataatattaaaaattcttaaagaataaagagtaatcaattataatgcaccatttgacacaatttaaagaggtgtgactgaaaaat 1005697  T
Q  170 agggagtgaacaaataaattatgcaattaa 199  Q
    ||| ||||||||||||||||||||||||||    
T  1005698 aggaagtgaacaaataaattatgcaattaa 1005727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 41322535 - 41322702
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| | || |||||||| |||| ||  |||| ||||| |||||| ||||||||||| |||||||||||  | |||| || |||||||||| ||||    
T  41322535 tgctatatctttaaaaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgtgaaaattcaaggaggtgtggtagaaa 41322634  T
Q  167 aatagggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    |||||| ||| ||||| ||||| |||||||||| | |||| |||  ||||| ||||||||||||||||    
T  41322635 aataggaagttaacaattaaatcatgcaattaaaacttgctaactatgtcttgaaaaattcttgatgc 41322702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 15562045 - 15561940
Alignment:
Q  129 tgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaacaattgccaactg--tctggaaaaattct 226  Q
    |||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||||||| || ||||||| | ||||||||||  ||| ||||||||||    
T  15562045 tgcattatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaataaatcatacaattaaaacttgccaactgtatcttgaaaaattct 15561946  T
Q  227 tgatgc 232  Q
    ||||||    
T  15561945 tgatgc 15561940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 4851739 - 4851871
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| ||||||||||||| |||| ||  | || ||||| |||||| ||||||||| | |||||||||| |||||||| || || |||||| |||||    
T  4851739 tgctatatctctagaaaaataacatcaagaattttttaagaataaagagcagtcaatcataatgcactattttccacaatttaaggaagtgtggctgaaa 4851838  T
Q  167 aatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||| | | ||||||||||| ||||||||||    
T  4851839 aataggaaataaacaaataaatcatgcaattaa 4851871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 237
Target Start/End: Original strand, 11643326 - 11643462
Alignment:
Q  104 aagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaacaat 203  Q
    ||||| |||||| ||||||||||| |||||||||| |||||||| ||  | |||| ||||||||||| | ||||||||||||||| || ||||||| | |    
T  11643326 aagaataaagagcagtcaatcacaatgcactatttaccacaatttaagaaagtgtagttgaaaaatacgaagtgaacaaataaatcatacaattaaaatt 11643425  T
Q  204 tgcca---actgtctggaaaaattcttgatgcatttc 237  Q
    |||||     |||||| ||||||||||||| ||||||    
T  11643426 tgccatgctgtgtctgaaaaaattcttgatacatttc 11643462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 39112658 - 39112796
Alignment:
Q  71 atatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaata 170  Q
    |||| ||||||||||||| |||| ||  |||| || || |||||| |  |||||||| |||||||||||||| |||| || |||||| || |||||||||    
T  39112658 atatctctagaaaaataacatcaagaattcttcaaaaataaagagcaaccaatcacaatgcactatttgccataattcaaggaggtgcggctgaaaaata 39112757  T
Q  171 gggagtgaacaaataaattatgcaattaacaattgccaa 209  Q
    |  ||||||||||||||| || ||||||| | |||||||    
T  39112758 gaaagtgaacaaataaatcatccaattaaaatttgccaa 39112796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 34392114 - 34392246
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| |||| |||||||| |||| ||  | || ||||| |||||| | ||||||||| || |||||||||||||||| ||  |||||||| |||||    
T  34392114 tgctatatctctaaaaaaataacatcaagaatttttcaagaataaagagcactcaatcacaatgtactatttgccacaatttaagaaggtgtggctgaaa 34392213  T
Q  167 aatagggagtgaacaaataaattatgcaattaa 199  Q
    |||    ||||||||||||||| ||||||||||    
T  34392214 aatgaaaagtgaacaaataaatcatgcaattaa 34392246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 8551548 - 8551625
Alignment:
Q  120 caatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaatt 197  Q
    |||||||| |||| | ||||||||||||||| ||| ||||||| ||||||||  | ||||||||||||| ||||||||    
T  8551548 caatcacaatgcattgtttgccacaattaaaggagatgtggttaaaaaatagaaaatgaacaaataaatcatgcaatt 8551625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 33888949 - 33888986
Alignment:
Q  162 tgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33888949 tgaaaaatagggagtgaacaaataaattatgcaattaa 33888986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 2001686 - 2001785
Alignment:
Q  99 tcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaatta 198  Q
    |||| ||||| |||||| ||||||||| ||  ||| ||||||||||||| || ||||||||| || |||||||  ||||||||||||||| ||| |||||    
T  2001686 tcttcaagaataaagagcagtcaatcaaata-cacgatttgccacaatttaaggaggtgtggctggaaaatagatagtgaacaaataaatcatgtaatta 2001784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 37919680 - 37919603
Alignment:
Q  119 tcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaat 196  Q
    ||||||||| |||| |||||| ||||||| || ||| ||||  ||||||||||  ||||||||||||||| |||||||    
T  37919680 tcaatcacaatgcattatttgtcacaatttaaggagatgtgagtgaaaaatagtaagtgaacaaataaatcatgcaat 37919603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 5549036 - 5549072
Alignment:
Q  162 tgaaaaatagggagtgaacaaataaattatgcaatta 198  Q
    |||| |||||||||||||||||||||| |||||||||    
T  5549036 tgaacaatagggagtgaacaaataaatcatgcaatta 5549072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 54358171 - 54358285
Alignment:
Q  120 caatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaacaattgccaac--tgtctgg 217  Q
    |||||||| ||||||||||||||||||| || | ||||||| ||||||||||| ||||||||||||||| |||||||||| | ||||||||  ||||| |    
T  54358171 caatcacaatgcactatttgccacaatttaagggggtgtggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactatgtcttg 54358270  T
Q  218 aaaaattcttgatgc 232  Q
    |||||||||||||||    
T  54358271 aaaaattcttgatgc 54358285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 18375580 - 18375417
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  |||| ||||| |||| |  |||||||||| ||||||||||||||||||| || ||||||||| || |||||    
T  18375580 tatatctctagaaaaataacatcaagaattcttcaagaataaagtgcggtcaatcacaatgcactatttgccacaattcaaggaggtgtggctg-aaaat 18375482  T
Q  170 agggagtgaacaaataaattatgcaattaacaattgcca--actgtctggaaaaattcttgatgc 232  Q
    ||| ||||||||||||||| |||||||||| | ||||||    ||||| ||||||||||||||||    
T  18375481 aggaagtgaacaaataaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgc 18375417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 24683082 - 24683214
Alignment:
Q  67 tgctatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaa 166  Q
    |||||||| ||||||||||||| |||| ||  |||| ||||| |||||| || |||||||| ||||||||||||||||||| |   |||||||  |||||    
T  24683082 tgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaggaaggtgtgactgaaa 24683181  T
Q  167 aatagggagtgaacaaataaattatgcaattaa 199  Q
    |||||| ||||||||||||||| ||||||||||    
T  24683182 aataggaagtgaacaaataaatcatgcaattaa 24683214  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 41633226 - 41633389
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| || | ||  |||| ||||| |||||| || |||||||| ||||||| ||||||||||| || ||||||||| ||||||||    
T  41633226 tatatctctagaaaaataacattaagaattcttcaagaataaagagcagccaatcacaatgcactacttgccacaattcaaggaggtgtggctgaaaaat 41633325  T
Q  170 agggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    ||| |||||||||||||| |||| |||||| | ||| || |  ||||| ||||||||||||||||    
T  41633326 aggaagtgaacaaataaa-tatgtaattaaaatttgtcagctttgtcttgaaaaattcttgatgc 41633389  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 26179400 - 26179282
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| || | ||  |||| ||||| |||||| || |||||||| ||||||||||  ||||||| || ||||||||| ||||||||    
T  26179400 tatatctctagaaaaataacattaagaattcttcaagaataaagagcagccaatcacagtgcactatttaacacaattcaaggaggtgtggctgaaaaat 26179301  T
Q  170 agggagtgaacaaataaat 188  Q
    ||| |||||||||||||||    
T  26179300 aggaagtgaacaaataaat 26179282  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 232
Target Start/End: Complemental strand, 37674184 - 37674026
Alignment:
Q  76 tctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggag 175  Q
    ||||||||||||| |||| ||  |||| ||||  |||||| ||||||||||| || ||||||| | |||||| || ||||||||| |||||||||   ||    
T  37674184 tctagaaaaataacatcaagaattcttcaagactaaagagcagtcaatcacaatgtactatttactacaattcaaagaggtgtggctgaaaaataaaaag 37674085  T
Q  176 tgaacaaataaattatgcaattaacaattgcca-ac-tgtctggaaaaattcttgatgc 232  Q
    | ||||||||||| |||||||||| | ||| || || ||||| ||||||||||||||||    
T  37674084 ttaacaaataaatcatgcaattaaaacttgtcacacgtgtcttgaaaaattcttgatgc 37674026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 4512306 - 4512189
Alignment:
Q  117 agtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaacaattgccaact--gtc 214  Q
    ||||||||||| |  |||||||||||||||| || ||| ||||  ||||||||||| ||| ||||||||||| |||||||||| | |||||| ||  ||     
T  4512306 agtcaatcacaatatactatttgccacaattcaaggagatgtgactgaaaaataggaagtaaacaaataaatgatgcaattaaaacttgccacctgagta 4512207  T
Q  215 tggaaaaattcttgatgc 232  Q
    | ||||||||||||||||    
T  4512206 ttgaaaaattcttgatgc 4512189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 47281675 - 47281593
Alignment:
Q  121 aatcacattgcactatttgccacaatta----aatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    ||||||| |||||||||||||||| | |    || ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  47281675 aatcacaatgcactatttgccacattaatttcaaggaggtgtggttgaaaaataggaagtgaacaaataaatcatgcaattaa 47281593  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 17847663 - 17847568
Alignment:
Q  139 gccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaacaattgccaac--tgtctggaaaaattcttgatgc 232  Q
    ||||||||| || ||||||||   |||||||||  ||||||||||||||| |||||||||| | ||||||||  ||||| ||||||||||||||||    
T  17847663 gccacaattcaaggaggtgtgacagaaaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgc 17847568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 54021385 - 54021318
Alignment:
Q  120 caatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaa 187  Q
    |||||||| |||||||| |||||||||| || ||||||||||||||||||||  ||| ||||||||||    
T  54021385 caatcacaatgcactatgtgccacaatttaaggaggtgtggttgaaaaatagaaagtaaacaaataaa 54021318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 41878592 - 41878654
Alignment:
Q  137 ttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    ||||||||||| ||| |||||||| ||||||||||| ||| ||||||||||| ||||||||||    
T  41878592 ttgccacaattcaataaggtgtggctgaaaaataggaagtaaacaaataaatcatgcaattaa 41878654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 47839098 - 47839003
Alignment:
Q  104 aagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaatagggagtgaacaaataaattatgcaattaa 199  Q
    ||||| |||||| |||||| |||| || |||||||||||||||| || |||||||||  |||||||||  | |||||||| | || ||||||||||    
T  47839098 aagaataaagagcagtcaaccacaatgtactatttgccacaatttaaggaggtgtggccgaaaaatagaaaatgaacaaaaacatcatgcaattaa 47839003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 23348257 - 23348174
Alignment:
Q  119 tcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat---agggagtgaacaaataaattatgcaattaa 199  Q
    ||||||||| | |||||||| ||| |||| || ||||||||| ||||||||   ||| ||||||||||||||| ||||||||||    
T  23348257 tcaatcacaatacactatttaccataattcaaggaggtgtggctgaaaaataggaggaagtgaacaaataaatcatgcaattaa 23348174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 492675 - 492804
Alignment:
Q  70 tatatatctagaaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaat 169  Q
    ||||| ||||||||||||| |||| ||  |||| ||||| |||||| || |||||||| ||||| ||||| ||||||| || ||||||||| ||||||||    
T  492675 tatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggtgtggctgaaaaat 492774  T
Q  170 agggagtgaacaaataaattatgcaattaa 199  Q
    ||| | ||||||||||||||||||||||||    
T  492775 aggaaatgaacaaataaattatgcaattaa 492804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 556 - 642
Alignment:
Q  81 aaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaa 168  Q
    |||||||| |||| ||  |||| ||||| |||||| ||||||||||| ||||||||||| ||||||| || ||||||||| |||||||    
T  556 aaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttg-cacaatttaaggaggtgtggctgaaaaa 642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 8516 - 8602
Alignment:
Q  81 aaaaataatatcatgacatcttaaagaacaaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggttgaaaaa 168  Q
    |||||||| |||| ||  |||| ||||| |||||| ||||||||||| ||||||||||| ||||||| || ||||||||| |||||||    
T  8516 aaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttg-cacaatttaaggaggtgtggctgaaaaa 8602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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