View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_high_29 (Length: 250)
Name: NF10142_high_29
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 32229855 - 32229622
Alignment:
| Q |
1 |
atcagtaaagtaaagagcataactctattaccttacatattggatccaacttagtatatcctatcctatagattatatgataagatacacagtgctaact |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32229855 |
atcagtaaagtaaagagcataactctgttaccttacatattggatccaacttagtatatcctatcctatagattatatgataagatacacagtgctaact |
32229756 |
T |
|
| Q |
101 |
tatacacaata--cttagaagggatggcaatgcaagtttagtgtccttattaattaatcaaacttggtaaagtgaaatcaacgatattgttcatttaaat |
198 |
Q |
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||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32229755 |
tatacacaatactcttaaaagggatg-----gcaagtttagtgtccttattaattaatcaaacttggtaaagtgaaatcaacgatattgttcatttaaat |
32229661 |
T |
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| Q |
199 |
aagcctccaacagactttgcagcaccatcaaccgcacct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
32229660 |
aagcctccaacagactttgcagcaccatcaaccgcacct |
32229622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 32225006 - 32224858
Alignment:
| Q |
1 |
atcagtaaagtaaagagcataactctattaccttacatattggatccaacttagtatatcctatcctatagattatatgataagatacacagtgctaact |
100 |
Q |
| |
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||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32225006 |
atcagtaaagtgaagagcagagctctgttaccttacatattggatccaacttagtatatcctatcctatagtttatatgataagatacacagtgctaact |
32224907 |
T |
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| Q |
101 |
tatacacaatacttagaagggatggcaatgcaagtttagtgtccttattaattaat |
156 |
Q |
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||||||| |||||| ||||||||| |||||||||| ||||||||||||||| |
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| T |
32224906 |
tatacac-atactt-gaagggatg-----acaagtttagtatccttattaattaat |
32224858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 32220424 - 32220388
Alignment:
| Q |
51 |
ttagtatatcctatcctatagattatatgataagata |
87 |
Q |
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||||||||||||||||||||||||| ||||||||||| |
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| T |
32220424 |
ttagtatatcctatcctatagattacatgataagata |
32220388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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