View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10142_high_34 (Length: 243)
Name: NF10142_high_34
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 46452063 - 46452289
Alignment:
| Q |
1 |
tttctataggaagacgattaaggtttagggtttatgattaggagccaatacatgaaactttatgtatattcgtatggaatttcataaagcatatttt-tt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46452063 |
tttctataggaagacgattaaggtttagggtttatgattaggagccaatacatgaaactttatgtatattcgtatggaatttcataaagcatattttttt |
46452162 |
T |
|
| Q |
100 |
atcattgatttgaagcaaatttcttgatgttgattaaagcctaaaagcttgtaattgtcacaaaattgtgttattgacttctataaggggggcatgatta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46452163 |
atcattgatttgaagcaaatttcttgatgttgattaaagcctaaaagcttgtaattgtcacaaaattgtgttattgacttctataaggggggcatgatta |
46452262 |
T |
|
| Q |
200 |
aggtctataaaatttgcggttagaagc |
226 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
46452263 |
aagtctataaaatttgcggttagaagc |
46452289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University