View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10142_high_37 (Length: 238)

Name: NF10142_high_37
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10142_high_37
NF10142_high_37
[»] chr3 (7 HSPs)
chr3 (1-223)||(39566329-39566551)
chr3 (79-223)||(39581339-39581483)
chr3 (47-223)||(39568990-39569165)
chr3 (76-223)||(39584975-39585122)
chr3 (46-223)||(39571807-39571984)
chr3 (89-223)||(39561620-39561754)
chr3 (93-223)||(39574798-39574928)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39566551 - 39566329
Alignment:
Q  1 ataatacatcatatacaacacaaatcaaactcaaacaaacatcttaaacatataactagacaaattcctatttagctatactctcaatttttcgatggat 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39566551 ataatacatcatatacaacacaactcaaactcaaacaaacatcttaaacatataactagacaaattcctatttagctatactctcaatttttcgatggat 39566452  T
Q  101 ccatcccacatatctgcttatgcaaacttcagttttgaactgagaatcattcaagcccgaaatattgaatccgtcaaatctacgaaaaacttatttgcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39566451 ccatcccacatatctgcttatgcaaacttcagttttgaactgagaatcattcaagcccgaaatattgaatccgtcaaatctacgaaaaacttatttgcaa 39566352  T
Q  201 ggttatatcttccaacaggaaac 223  Q
    |||||||||||||||| ||||||    
T  39566351 ggttatatcttccaacgggaaac 39566329  T

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Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 39581339 - 39581483
Alignment:
Q  79 tactctcaatttttcgatggatccatcccacatatctgcttatgcaaacttcagttttgaactgagaatcattcaagcccgaaatattgaatccgtcaaa 178  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39581339 tactctcaatttttcaatggatccatgccacatatctgcttatgcaaacttcagttttgaactgagaatcattcaagcccgaaatattgaatccgtcaaa 39581438  T
Q  179 tctacgaaaaacttatttgcaaggttatatcttccaacaggaaac 223  Q
    || || |||||||||||||| ||||||||||||||||||||||||    
T  39581439 tccacaaaaaacttatttgctaggttatatcttccaacaggaaac 39581483  T

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Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 39569165 - 39568990
Alignment:
Q  47 aacatataactagacaaattcctatttagctatactctcaatttttcgatggatccatcccacatatctgcttatgcaaacttcagttttgaactgagaa 146  Q
    |||| |||| |||||||||||||| || |||| |||||||||||||| |||||||||| ||| ||| ||||||||||||||||||| | |||||| ||||    
T  39569165 aacacataattagacaaattcctaatt-gctaaactctcaatttttcaatggatccattccatatacctgcttatgcaaacttcagctgtgaactaagaa 39569067  T
Q  147 tcattcaagcccgaaatattgaatccgtcaaatctacgaaaaacttatttgcaaggttatatcttccaacaggaaac 223  Q
    | || |||||||||||| ||||||| ||||| || ||||||||||| ||||||||||| ||||||||||||||||||    
T  39569066 taatacaagcccgaaatgttgaatctgtcaagtccacgaaaaacttgtttgcaaggttgtatcttccaacaggaaac 39568990  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 223
Target Start/End: Original strand, 39584975 - 39585122
Alignment:
Q  76 ctatactctcaatttttcgatggatccatcccacatatctgcttatgcaaacttcagttttgaactgagaatcattcaagcccgaaatattgaatccgtc 175  Q
    |||||||||||| ||||| |||||||||||||| ||| | ||||||||||||||||| | |||||||||||| || |||||| |||| | ||||| | ||    
T  39584975 ctatactctcaaattttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaataatacaagccagaaacactgaattcatc 39585074  T
Q  176 aaatctacgaaaaacttatttgcaaggttatatcttccaacaggaaac 223  Q
    ||||| ||||||||||| ||| ||||||| ||||||||||||||||||    
T  39585075 aaatccacgaaaaacttgttttcaaggttgtatcttccaacaggaaac 39585122  T

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Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 223
Target Start/End: Complemental strand, 39571984 - 39571807
Alignment:
Q  46 aaacatataactagacaaattcctatttagctatactctcaatttttcgatggatccatcccacatatctgcttatgcaaacttcagttttgaactgaga 145  Q
    ||||| |||||||||||||||||||  ||||||||||||||||   || ||||||||||| || ||| ||||||||| ||| ||||| |  |||||||||    
T  39571984 aaacacataactagacaaattcctaactagctatactctcaataactcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgaga 39571885  T
Q  146 atcattcaagcccgaaatattgaatccgtcaaatctacgaaaaacttatttgcaaggttatatcttccaacaggaaac 223  Q
    || || ||||| || || || |||| | |||| || ||||| ||||||||||||||||| ||||||||||||||||||    
T  39571884 ataatacaagctcgtaacatcgaattcatcaagtccacgaagaacttatttgcaaggttgtatcttccaacaggaaac 39571807  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 39561754 - 39561620
Alignment:
Q  89 ttttcgatggatccatcccacatatctgcttatgcaaacttcagttttgaactgagaatcattcaagcccgaaatattgaatccgtcaaatctacgaaaa 188  Q
    ||||| |||||||||||  | | | |||| |||||||||||||||| |||||||||||| |||||||| ||||| ||||||| | |||| ||  | ||||    
T  39561754 ttttcaatggatccatcgaaaacacctgcatatgcaaacttcagttgtgaactgagaataattcaagcacgaaacattgaattcatcaagtcggcaaaaa 39561655  T
Q  189 acttatttgcaaggttatatcttccaacaggaaac 223  Q
    |  | ||||||||| | ||||||||||||||||||    
T  39561654 atatgtttgcaaggctgtatcttccaacaggaaac 39561620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 39574798 - 39574928
Alignment:
Q  93 cgatggatccatcccacatatctgcttatgcaaacttcagttttgaactgagaatcattcaagcccgaaatattgaatccgtcaaatctacgaaaaactt 192  Q
    |||||||||||||  | || ||| ||||||  |||||||||| |||| ||||| | || ||||| ||||| || |||| | |||| || |||||||||||    
T  39574798 cgatggatccatcttatatgtcttcttatgttaacttcagttgtgaattgagattaatacaagctcgaaacatcgaattcatcaagtccacgaaaaactt 39574897  T
Q  193 atttgcaaggttatatcttccaacaggaaac 223  Q
     ||||||||||| ||||||||||||||||||    
T  39574898 gtttgcaaggttgtatcttccaacaggaaac 39574928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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