View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10142_high_40 (Length: 228)
Name: NF10142_high_40
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_high_40 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 31160544 - 31160310
Alignment:
| Q |
1 |
atttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttctagaagtta |
100 |
Q |
| |
|
||||||||||||||||| || |||||||| || |||||||||||| ||||||||||| |||||||||||||||| | ||||||| ||||||| |||||| |
|
|
| T |
31160544 |
atttatagccctctatgagcttgatttgtcgtgccttaagcctcaaataatgagggtatttaaagtctttctttcaagctctagaggcttctaaaagtta |
31160445 |
T |
|
| Q |
101 |
ctatttagcattctccttaacttatgaacttgtttttactaaatttgcttataacaccgcaacaattattttctcaccttctgttcagtttgcttgtggt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31160444 |
ctatttagcattttccttaacttatgaacttgtttttactaaatttgcttataacaccgcaacaattattttctcaccttctgttcagtttgcttgtggt |
31160345 |
T |
|
| Q |
201 |
t-------ttggctttgaatttacaatgtgcatgc |
228 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
31160344 |
tttgggttttggctttgaatttacaatgtgcatgc |
31160310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 24909162 - 24909259
Alignment:
| Q |
1 |
atttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttctagaagtt |
99 |
Q |
| |
|
|||||||||||| | || ||||| ||| | |||||||||| |||||||||||||||| || |||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
24909162 |
atttatagccctttgtgggcctgttttatcgtgacttaagcttcaagtaatgagggtactt-aagtctttctgccgagctctagaggcttctagaagtt |
24909259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 24911383 - 24911480
Alignment:
| Q |
1 |
atttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttctagaagtt |
99 |
Q |
| |
|
|||||||||||| | || ||||| ||| | |||||||||| |||||||||||||||| || |||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
24911383 |
atttatagccctttgtgggcctgttttatcgtgacttaagcttcaagtaatgagggtactt-aagtctttctgccgagctctagaggcttctagaagtt |
24911480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 14654302 - 14654359
Alignment:
| Q |
32 |
tgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgctt |
90 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||| ||| ||||||| |||| |
|
|
| T |
14654302 |
tgacttaagcctcaagtaatgagggtactt-aagtctttctgccgagctctagaggctt |
14654359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14082796 - 14082890
Alignment:
| Q |
1 |
atttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttctagaag |
97 |
Q |
| |
|
|||||||||||| ||| || ||||| ||| ||||||||||| ||||||||||||||| || |||| ||||| | | ||||||| ||||||||||| |
|
|
| T |
14082796 |
atttatagccctttatatgtctgatctgtcgtgacttaagcc-caagtaatgagggtactt-aagtttttctgccaagctctagaggcttctagaag |
14082890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12697270 - 12697365
Alignment:
| Q |
1 |
atttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttctagaag |
97 |
Q |
| |
|
||||||||||||||||| || |||||| ||||||||||| ||||||||||||| | ||||| ||||||| ||| ||||||| ||||||||||| |
|
|
| T |
12697270 |
atttatagccctctatgggcttgatttcctgtgacttaagccccaagtaatgagggcatttaaa-tctttctgccgagctctagaggcttctagaag |
12697365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 9375577 - 9375670
Alignment:
| Q |
1 |
atttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttctaga |
95 |
Q |
| |
|
||||||||||||||||| ||||| | | ||||||||||| ||||||||||||| ||| |||||||||| || ||||||||| ||||||||| |
|
|
| T |
9375577 |
atttatagccctctatggacctgaactctcgtgacttaagccccaagtaatgaggg-catttaagtctttctatccaactctagaggcttctaga |
9375670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9161182 - 9161087
Alignment:
| Q |
1 |
atttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttctagaag |
97 |
Q |
| |
|
||||||||||||||| | ||||||| ||| |||| |||||||||||||| ||||||| || |||||||| | ||| ||||||| ||||||||||| |
|
|
| T |
9161182 |
atttatagccctctaggggcctgatctgtcgtgacataagcctcaagtaacgagggtactt-aagtctttatgccgagctctagacgcttctagaag |
9161087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University