View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10142_high_42 (Length: 227)
Name: NF10142_high_42
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_high_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 32615252 - 32615089
Alignment:
| Q |
1 |
ttctctcggtgatccagttgaaaatggccattagtgtcatttaattaataatgattcctctttaaagagggataactattgtcataaaacatcctttctt |
100 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
32615252 |
ttctctcagtgagccagttgaaaatggccattagtgtcatttaattaataataattcctccttaaagagggataactattgtcataaaccat-atttctt |
32615154 |
T |
|
| Q |
101 |
aagataaaatatgatcaatttctccatgagatgtcagctcacacgtaagagtttaatcttgtaac |
165 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
32615153 |
aagataaaataagatcaatttctccatgaggtgtcagctcacgcgtaagagtttaatcttgtaac |
32615089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 32615368 - 32615296
Alignment:
| Q |
99 |
ttaagataaaatatgatcaatttctccatgagatgtcagctcacacgtaagagtttaatcttgtaacctcaag |
171 |
Q |
| |
|
||||||||||||| |||||||||||||| || || ||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
32615368 |
ttaagataaaataaaatcaatttctccataaggtgacagcttaaacgtaagagtttgatcttgtaacctcaag |
32615296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 32615060 - 32615001
Alignment:
| Q |
9 |
gtgatccagttgaaaatggccattagtgtcatttaattaataatgattcctctttaaaga |
68 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| |||||||| ||| ||| ||||||| |
|
|
| T |
32615060 |
gtgagccagttgaaaacggccattagtgtcatttgattaataacaatttctccttaaaga |
32615001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University