View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_high_44 (Length: 222)
Name: NF10142_high_44
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 5410851 - 5410923
Alignment:
| Q |
136 |
taagatgaaagtgttgtccttgtgcatgaggtagtagctcagtggtaacgggtaagaatttaaccttataact |
208 |
Q |
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| T |
5410851 |
taagatgaaagtgttgtccttgtgcatgaggtagtagctcagtggtaacgggtaagaatttaaccttataact |
5410923 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5410732 - 5410779
Alignment:
| Q |
1 |
actatatttccaagtctacttattcatcttattaaatccttccctcct |
48 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5410732 |
actatatttccaagtccacttattcatcttattaaatccttccctcct |
5410779 |
T |
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