View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_high_5 (Length: 493)
Name: NF10142_high_5
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_high_5 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 26 - 478
Target Start/End: Original strand, 3729423 - 3729879
Alignment:
| Q |
26 |
gctctaaatatcctatttcatctctccaccatacacctggagcacatcggactagccgagtttaaacaccgacacattgttgaaacgaactctcac--ta |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
3729423 |
gctctaaatatcctatttcatctctccaccatacacctggagcacatcggactagccgagtttaaacaccgacacattgttgaaac-aactctcacacta |
3729521 |
T |
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| Q |
124 |
ttaagtcatgcttccattcccacaccttttgaatgacttcacaactaactttcatcctataattttttaatattggtgttatgctnnnnnnnnn-ttatc |
222 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3729522 |
ttaagtcatgcttccattccctcaccttttgaatgacttcacaactaactttcatcctataattttttaatattggtgttatgctaaaaaaaaaattatc |
3729621 |
T |
|
| Q |
223 |
ctccatgtagtacaccatgtgtcttccctggtacatgttttcgagggtttaatttggtagaacaaatacatttttcttgtttatgctaaatactttttag |
322 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3729622 |
ctccatgtagtacaccatgtgtcttccctggcacatgttttcgagggtttaatttggtagaacaaatacatttttcttgtttatgctaaatactttttag |
3729721 |
T |
|
| Q |
323 |
tagcctattgcagacttacatcgtctaaaccggaaaaaacatgaacgatgaagcttcatcattattcatttaccaaaata--agaggttatattatttat |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |
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| T |
3729722 |
tagcctattgcagacttacatcgtctaaaccggaaaaaacatgaacgatgaagcttcattattattcatttgccaaaataagagaggttatattatttat |
3729821 |
T |
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| Q |
421 |
acaaactataaaaagaaaaagatatcatacatgtatgaattcaattaacttaattcat |
478 |
Q |
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| T |
3729822 |
acaaactataaaaagaaaacgatatcatacatgtatgaattcaattaacttaattcat |
3729879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 34821494 - 34821568
Alignment:
| Q |
328 |
tattgcagacttacatcgtctaaaccggaaaaaacatgaacgatgaagcttcatcattattcatttaccaaaata |
402 |
Q |
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||||||||||||| || ||||| || ||||| ||||| ||||||||| |||| || || ||| |||||||||||| |
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| T |
34821494 |
tattgcagacttatattgtctacactggaaacaacatcaacgatgaaacttcttcgttgttcctttaccaaaata |
34821568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 92224 - 92338
Alignment:
| Q |
32 |
aatatcctatttcatctctccaccatacacctg-gagcacatcggactagccgagtttaaacaccgacacattgttgaaacgaactctcac--tattaag |
128 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| ||||||| |
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| T |
92224 |
aatatcccatttcatctctccaccatacaccccagagcacatcggactagccgagcgtaaacaccgacacattgttgaaac-agctctcacaatattaag |
92322 |
T |
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| Q |
129 |
tcatgcttccattccc |
144 |
Q |
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| T |
92323 |
tcatgcttccattccc |
92338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 24492859 - 24492973
Alignment:
| Q |
32 |
aatatcctatttcatctctccaccatacacctg-gagcacatcggactagccgagtttaaacaccgacacattgttgaaac-gaactctcactattaagt |
129 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| | ||| ||||||||||| |
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| T |
24492859 |
aatatcctatttcatctccccaccatacaccccagagcacatcggactagccgagcataaacaccgacacatcgttgaaacagctctcacactattaagt |
24492958 |
T |
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| Q |
130 |
catgcttccattccc |
144 |
Q |
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| T |
24492959 |
catgcttccattccc |
24492973 |
T |
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