View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10142_low_1 (Length: 648)
Name: NF10142_low_1
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 42725358 - 42724981
Alignment:
| Q |
10 |
cgttggatcggattgggatgaaattatgaagtacttgatttgtaaggactagtactgtatgtgtgaggactgtaacatgatttaatgaatttgattttag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42725358 |
cgttggatcggattgggatgaaattatgaagtacttgatttgtaaggactagtactgtatgtgtgaggactgtaacatgatttaatgaatttgattttag |
42725259 |
T |
|
| Q |
110 |
agttccattattatttgactagttagagttccattatgaaatgtgataattatttatgtttgaatttcctctagttaaaaaactatagattttctatacc |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42725258 |
agttccattattttttgactagttagagttccattatgaaatgtgataattatttatgtttgaatttcctctagttaaaaaactatagattttctatacc |
42725159 |
T |
|
| Q |
210 |
gatgtttaaatcctcaaaccacatttgtagaaatataaaaacattccctcaaaatcctcactcaaacgtgagttggttctaacttnnnnnnnttggtctt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| |
|
|
| T |
42725158 |
gatgtttaaatcctcaaaccacatttgtagaaatataaaaacattccctcaaaatcctcactcaaacgtgagttggttctaac-tcaaaaagctaatctt |
42725060 |
T |
|
| Q |
310 |
gtaaatatgagttcgagatagcttatactatttttgaatagattattacaaaaattatttgaacaactatttaaagtat |
388 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
42725059 |
gtaaatatgagttcgagatagcctatactatttttgaatagattatcacaaaaattatttgaacaactatttagagtat |
42724981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 366 - 630
Target Start/End: Complemental strand, 42724975 - 42724711
Alignment:
| Q |
366 |
atttgaacaactatttaaagtattcatccattatattctcataccaaatttaatactagtattaacggtataagtgtgggagagtgtatttaagaaggcg |
465 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42724975 |
atttgaacaactatttaaagtattcatcctttatattctcataccaaatttaatactagtattaacggtataagtgtgggagagtgtatttaagaaggcg |
42724876 |
T |
|
| Q |
466 |
tccatttttcaaaccgaaactgtaaaattttagtcaactaaaattgtaagaagttaaaaatgtgttgttgggtgttgcgaattaacataacacaggcaaa |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42724875 |
tccatttttcaaaccgaaactgtaaaattttagtcaactaaaattgtaagaagttaaaaatgtgtcgttgggtgttgcgaattaacataacacaggcaaa |
42724776 |
T |
|
| Q |
566 |
aagaaagatagttaattagtgtgataaatgtggaggccaggttgaaatgaattgaatggacccat |
630 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42724775 |
aagaaagatagttaattagtgtgataaatgtggaggccaggttgaaatgaattgaatggacccat |
42724711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University