View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_10 (Length: 493)
Name: NF10142_low_10
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 31054303 - 31054770
Alignment:
| Q |
19 |
atatgtggagggtgcaacaaggagatactctacggtaattgtttgggagtcgaacatagttattttcatccagactgctttcggtgtcactcttgtcatc |
118 |
Q |
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| T |
31054303 |
atatgtggagggtgcaacaaggagatactctacggtaattgtttgggagtcgaacatagttattttcatccagactgctttcggtgtcactcttgtcatc |
31054402 |
T |
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| Q |
119 |
atcctattaccgagcgtgaggtattttgatttgatcatcttgagatttagagcatatattgatataatctattttcaagccttaacacacatttacacag |
218 |
Q |
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| T |
31054403 |
atcctattaccgagcgtgaggtattttgatttgatcatcttgagatttagagcatatattgatataatctattttcaagccttaacacacatttacacag |
31054502 |
T |
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| Q |
219 |
gcacatcatgtagatccactcttacatttatcatacttcaatattttccaacaaaagtatgctatttacactttcaaagctatgcttacaaacaaattga |
318 |
Q |
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| T |
31054503 |
gcacatcatgtagatgcactcatacatttatcatacttcaatattttccaacaaaagtatgctatttacactttcaaagctatgcttacagacaaattga |
31054602 |
T |
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| Q |
319 |
ttttaacacttctcttttatccatctcttacggccttttgtttctgttgatccaagttttctttgtcagggaagcatccatatcacaagtattgttttaa |
418 |
Q |
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| T |
31054603 |
ttttaacacttctcttttatccatctcttacggccttttgtttctgttgatccaagttttctttgtcagggaagcatccatatcacaagtattgttttaa |
31054702 |
T |
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| Q |
419 |
agaattgagccatcctaaatgtgaagtttgccgtcattatgtaagtttttcttccccttcctttgctt |
486 |
Q |
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| T |
31054703 |
agaattgagccatcctaaatgtgaagtttgccgtcattatgtaagtttttcttccccttcctttgctt |
31054770 |
T |
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Back To:
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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 354 - 449
Target Start/End: Complemental strand, 34744107 - 34744012
Alignment:
| Q |
354 |
ttttgtttctgttgatccaagttttctttgtcagggaagcatccatatcacaagtattgttttaaagaattgagccatcctaaatgtgaagtttgc |
449 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| || || ||||||||||||||| |
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| T |
34744107 |
ttttttttttgttgatccaagttttctttgtcagggaagcatccatatcacaaatcttgttttaaagagttgactcacccaaaatgtgaagtttgc |
34744012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 34744243 - 34744173
Alignment:
| Q |
78 |
ttattttcatccagactgctttcggtgtcactcttgtcatcatcctattaccgagcgtgaggtattttgat |
148 |
Q |
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| T |
34744243 |
ttattttcatccagactgctttcgatgccactcttgtcgttctcccattaccgagcgcgaggtagtttgat |
34744173 |
T |
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