View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_11 (Length: 482)
Name: NF10142_low_11
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 39776569 - 39776143
Alignment:
| Q |
11 |
aagcaaaggaaattattaacaagaaaacaatggaaggaaattgtgctagactgaaatgcagtaataatagacatacagattcatccaaattcctaaaaat |
110 |
Q |
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| T |
39776569 |
aagcaaaggaaattattaacaagaaaacaatggaaggaaattgtgctagactgaaatgcagtaataatagacatacagattcatccaaattcctaaaaat |
39776470 |
T |
|
| Q |
111 |
gtggaaactgccaacaaagaaaatggtttatggacccaaaataattaaagctaaagcttttatcattcaataacaagtcagtccaaatttttagttagaa |
210 |
Q |
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| T |
39776469 |
gtggaacctgccaacaaagaaaatggtttatggacccaaaataattaaagctaaagcttttatcattcaataacaagtcagtccaaatttttagttagaa |
39776370 |
T |
|
| Q |
211 |
ttatttaaataaatgagtcagattcaattcatctaattttttcacaagtcaaactcaagaattggtccggcttaactcgttttaaccaataatatcaatg |
310 |
Q |
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| T |
39776369 |
ttatttaaataaatgagtcagattcaattcatctaattttttcacaagtcaaactcaagaattggtccggcttaactcgtttgaaccaataatatcaatg |
39776270 |
T |
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| Q |
311 |
atcaagtcatccannnnnnncccaagttaaactcaaactttaagtatttgtctcgactcctatgatgcattaaccactcaatattggtgctctgaacata |
410 |
Q |
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| T |
39776269 |
atcaagtcatccatttttttcccaagttaaactcaaactttaagtatttgtctcgactcctatgatgcattaaccactcaatattggtgctctgaacata |
39776170 |
T |
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| Q |
411 |
attggtgatccgaagtggacctagatt |
437 |
Q |
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| T |
39776169 |
attggtgatccgaagtggacctagatt |
39776143 |
T |
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