View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10142_low_12 (Length: 470)
Name: NF10142_low_12
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 31 - 456
Target Start/End: Complemental strand, 16589263 - 16588845
Alignment:
| Q |
31 |
atttgctgagcataaatcaatttatatatctaaaagttaaacatgttgaattagtgtgtagaaatcgatttatgggatatannnnnnnnnnnnnnnattg |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16589263 |
atttgctgagcataaatcaatttatatatctaaaagttaaacatgttgaattagtgtgtagaaatcgatttatgggatat------gtgtgtgtgtattg |
16589170 |
T |
|
| Q |
131 |
atttatatttgaccaaaagctaataaaccttcatattaacgtaatattaataagtacattgaagttcaattagatcttgttaatgagcttagtttataat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16589169 |
atttatatttgaccaaaagctaataaaccttcatattaacataatattaataagtacattgaagttcaattagatcttgttaatgagcctagtttataat |
16589070 |
T |
|
| Q |
231 |
tgagtaattaataaaaatatgttgttgatgtgttactctgtgatgttattgtgctcatttcatgttgatgatgtgttatttcttaatatcgtgcttatga |
330 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16589069 |
tgagtaattaataaaa-tatgttgttgatgtgttactctatgatgttattgtgctcatttcatgttgatgatgtgttatttcttaatatcatgcttatga |
16588971 |
T |
|
| Q |
331 |
ttaagttaaaccattatgcttgtgagccatatattatagactaagtatgatattatagtaattgttaatagactaatttattgtaaatgaactcaagttg |
430 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16588970 |
ttaagttaaactattatgcttgtgagccatatattatagattaagtatgatattatagtaattgttaatagactaatttattgtaaatgaactcaagttg |
16588871 |
T |
|
| Q |
431 |
catatatgggatgaatgtcttttgtc |
456 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
16588870 |
catatttgggatgaatgtcttttgtc |
16588845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University